Wall clock time and date at job start Tue Mar 31 2020 06:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47239 * 2 1 4 4 N 1.31805 * 119.02067 * 89.99866 * 3 2 1 5 5 C 1.33024 * 120.91595 * 180.02562 * 4 3 2 6 6 N 1.38579 * 120.49157 * 180.02562 * 5 4 3 7 7 C 1.46495 * 120.00332 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47536 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47190 * 179.97438 * 8 7 6 10 10 H 1.08007 * 119.99797 * 0.02562 * 9 8 7 11 11 C 1.37879 * 120.00035 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99609 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00123 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46946 * 60.00134 * 13 11 9 15 15 H 1.48496 * 109.47106 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47014 * 300.00480 * 13 11 9 17 17 C 1.39464 * 119.01477 * 359.97438 * 5 4 3 18 18 C 1.39185 * 118.22410 * 0.02562 * 17 5 4 19 19 C 1.48429 * 120.50211 * 180.02562 * 18 17 5 20 20 N 1.34060 * 126.67803 * 0.02790 * 19 18 17 21 21 N 1.28989 * 107.26770 * 179.97438 * 20 19 18 22 22 N 1.28725 * 108.94378 * 0.02562 * 21 20 19 23 23 H 0.97000 * 125.33548 * 179.97438 * 22 21 20 24 24 N 1.28873 * 109.32737 * 359.74658 * 22 21 20 25 25 N 1.31631 * 119.01573 * 269.73167 * 3 2 1 26 26 H 1.09001 * 109.47002 * 60.00070 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00336 * 1 2 3 29 29 H 1.09001 * 109.46998 * 119.99373 * 2 1 3 30 30 H 1.09000 * 109.47050 * 239.99664 * 2 1 3 31 31 H 0.97006 * 119.99851 * 359.97438 * 6 5 4 32 32 H 1.09005 * 109.46994 * 299.99507 * 7 6 5 33 33 H 1.09001 * 109.47275 * 59.99219 * 7 6 5 34 34 H 1.09001 * 109.46365 * 299.99417 * 8 7 6 35 35 H 1.08994 * 109.47152 * 59.99699 * 8 7 6 36 36 H 0.97011 * 119.99602 * 179.97438 * 12 11 9 37 37 H 1.07997 * 120.88300 * 179.97438 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2455 2.0236 1.1526 5 6 2.6883 3.2773 1.1966 6 7 2.9098 3.9024 2.4133 7 6 3.3980 5.2832 2.4493 8 6 3.5562 5.7306 3.9038 9 6 4.0590 7.1507 3.9407 10 1 4.2466 7.6813 3.0189 11 6 4.2786 7.7731 5.1513 12 7 4.0497 7.1271 6.2738 13 14 4.9025 9.5332 5.1971 14 1 3.9312 10.4207 4.5084 15 1 5.0559 9.9674 6.6089 16 1 6.2169 9.6105 4.5103 17 6 2.9271 3.9527 0.0000 18 6 2.6891 3.2795 -1.1947 19 6 2.9268 3.9498 -2.4975 20 7 3.3703 5.2009 -2.6852 21 7 3.4399 5.3956 -3.9584 22 7 3.0605 4.3260 -4.5660 23 1 3.0201 4.2119 -5.5284 24 7 2.7475 3.4290 -3.6952 25 7 2.2503 2.0209 -1.1511 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5137 0.8901 30 1 1.8934 -0.5139 -0.8900 31 1 2.7417 3.4257 3.2412 32 1 4.3623 5.3409 1.9442 33 1 2.6841 5.9343 1.9448 34 1 2.5917 5.6730 4.4085 35 1 4.2699 5.0796 4.4086 36 1 4.2045 7.5649 7.1255 37 1 3.2863 4.9712 0.0005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590920494.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:59 Heat of formation + Delta-G solvation = 139.378152 kcal Electronic energy + Delta-G solvation = -21597.071690 eV Core-core repulsion = 18218.316257 eV Total energy + Delta-G solvation = -3378.755433 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.60180 -42.05502 -38.09961 -36.11947 -35.44120 -35.23382 -34.04058 -33.39462 -31.65594 -30.58476 -26.96375 -26.70104 -25.89012 -25.27293 -23.29889 -23.05865 -22.05230 -20.30338 -19.07628 -18.73730 -18.28329 -18.06789 -16.55234 -16.47188 -16.42539 -15.92887 -15.70745 -15.42458 -15.24169 -14.92062 -14.73432 -14.23947 -13.52258 -13.44705 -13.26783 -13.23081 -12.78177 -12.64543 -12.50226 -12.48194 -12.30919 -12.20538 -11.90686 -11.71580 -11.59117 -11.54650 -11.38893 -10.61816 -10.52382 -10.39665 -9.16458 -8.22285 -6.33001 -0.60346 0.05641 0.18375 1.15834 1.26593 1.44443 1.46517 1.54165 1.95097 2.19178 2.44056 2.78268 2.80320 3.13407 3.31691 3.57425 3.71571 3.98996 4.26361 4.31616 4.36165 4.36463 4.44875 4.48220 4.54852 4.73439 4.83964 5.07532 5.14929 5.17955 5.37005 5.44360 5.53894 5.57278 5.61352 5.78461 6.12493 6.18823 6.53852 6.82054 6.98245 7.18660 7.36820 8.89676 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.013701 B = 0.003804 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.227483 B = 7358.496565 C = 9292.463361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.050 4.050 3 C 0.360 3.640 4 N -0.584 5.584 5 C 0.439 3.561 6 N -0.695 5.695 7 C 0.142 3.858 8 C 0.021 3.979 9 C -0.543 4.543 10 H 0.068 0.932 11 C 0.006 3.994 12 N -0.930 5.930 13 Si 0.964 3.036 14 H -0.267 1.267 15 H -0.285 1.285 16 H -0.267 1.267 17 C -0.260 4.260 18 C 0.271 3.729 19 C 0.205 3.795 20 N -0.275 5.275 21 N -0.049 5.049 22 N -0.194 5.194 23 H 0.498 0.502 24 N -0.255 5.255 25 N -0.546 5.546 26 H 0.050 0.950 27 H 0.092 0.908 28 H 0.046 0.954 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.410 0.590 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.004 0.996 35 H 0.004 0.996 36 H 0.265 0.735 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.554 -11.492 -20.444 23.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.089 4.089 3 C 0.091 3.909 4 N -0.310 5.310 5 C 0.193 3.807 6 N -0.325 5.325 7 C 0.018 3.982 8 C -0.016 4.016 9 C -0.581 4.581 10 H 0.086 0.914 11 C -0.193 4.193 12 N -0.569 5.569 13 Si 0.789 3.211 14 H -0.191 1.191 15 H -0.211 1.211 16 H -0.192 1.192 17 C -0.291 4.291 18 C 0.127 3.873 19 C -0.076 4.076 20 N -0.148 5.148 21 N -0.043 5.043 22 N -0.046 5.046 23 H 0.358 0.642 24 N -0.108 5.108 25 N -0.267 5.267 26 H 0.069 0.931 27 H 0.111 0.889 28 H 0.065 0.935 29 H 0.118 0.882 30 H 0.124 0.876 31 H 0.246 0.754 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.073 0.927 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.589 -11.640 -20.649 24.144 hybrid contribution 0.473 1.338 0.590 1.537 sum -4.116 -10.302 -20.059 22.923 Atomic orbital electron populations 1.21645 0.92676 1.03673 1.01484 1.20501 0.97342 0.85724 1.05300 1.23532 0.88446 0.97666 0.81296 1.67834 1.22016 1.09295 1.31811 1.18580 0.87018 0.88069 0.86986 1.44930 1.68211 1.14750 1.04579 1.21561 0.98260 0.78847 0.99483 1.19111 0.96129 0.95789 0.90599 1.21445 1.44777 0.98809 0.93107 0.91365 1.25892 0.95518 1.02659 0.95247 1.70076 1.49615 1.39182 0.98059 0.85503 0.79263 0.79253 0.77077 1.19138 1.21082 1.19152 1.22020 1.11826 1.04145 0.91132 1.17741 0.92803 0.89591 0.87155 1.22917 1.03074 0.89755 0.91862 1.76166 1.17173 1.14629 1.06862 1.78912 1.14455 1.11140 0.99834 1.47914 1.38450 1.04880 1.13325 0.64190 1.75082 1.18986 1.18144 0.98621 1.68113 1.19332 1.08734 1.30566 0.93070 0.88941 0.93523 0.88172 0.87636 0.75369 0.91741 0.91757 0.97730 0.97723 0.92666 0.82781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.90 71.98 0.71 -1.62 16 2 C -0.05 -0.97 6.36 29.85 0.19 -0.78 16 3 C 0.36 10.17 6.90 138.79 0.96 11.13 16 4 N -0.58 -18.61 10.36 -185.59 -1.92 -20.53 16 5 C 0.44 14.80 7.71 133.10 1.03 15.83 16 6 N -0.70 -24.35 5.71 -344.68 -1.97 -26.32 16 7 C 0.14 5.50 4.86 86.38 0.42 5.92 16 8 C 0.02 1.04 5.09 29.85 0.15 1.19 16 9 C -0.54 -29.17 9.11 25.60 0.23 -28.93 16 10 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 11 C 0.01 0.30 5.46 84.66 0.46 0.76 16 12 N -0.93 -54.50 13.29 21.45 0.28 -54.21 16 13 Si 0.96 42.82 29.54 68.60 2.03 44.85 16 14 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 15 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 16 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 17 C -0.26 -8.41 9.05 22.79 0.21 -8.20 16 18 C 0.27 8.38 6.79 41.86 0.28 8.66 16 19 C 0.21 5.75 8.06 137.36 1.11 6.86 16 20 N -0.27 -7.72 12.30 -52.19 -0.64 -8.36 16 21 N -0.05 -1.06 13.47 37.02 0.50 -0.56 16 22 N -0.19 -2.98 7.90 37.02 0.29 -2.68 16 23 H 0.50 1.98 8.96 -347.54 -3.12 -1.14 16 24 N -0.25 -5.78 12.40 -52.14 -0.65 -6.43 16 25 N -0.55 -16.23 10.29 -177.21 -1.82 -18.05 16 26 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 27 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.41 14.09 8.60 -92.70 -0.80 13.30 16 32 H 0.06 2.44 7.97 -2.38 -0.02 2.42 16 33 H 0.06 2.44 7.97 -2.39 -0.02 2.42 16 34 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.26 14.68 8.31 -92.70 -0.77 13.91 16 37 H 0.15 4.94 6.76 -2.91 -0.02 4.92 16 Total: -1.00 -67.67 329.17 -0.93 -68.59 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -2.78 Total: 12.89 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 5.75 Total: 10.81 kcal Atomic # 7 Polarization: -131.22 SS G_CDS: -5.93 Total: -137.15 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -67.67 -0.93 -68.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590920494.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.973 kcal (2) G-P(sol) polarization free energy of solvation -67.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds