Wall clock time and date at job start Tue Mar 31 2020 06:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36944 * 119.99640 * 2 1 4 4 H 1.07994 * 119.99701 * 200.36594 * 3 2 1 5 5 C 1.38811 * 120.00014 * 20.36258 * 3 2 1 6 6 N 1.31616 * 119.99965 * 14.99646 * 5 3 2 7 7 Si 1.86803 * 120.00036 * 194.99328 * 5 3 2 8 8 H 1.48496 * 109.46746 * 85.00593 * 7 5 3 9 9 H 1.48498 * 109.47220 * 205.00489 * 7 5 3 10 10 H 1.48500 * 109.46890 * 325.00538 * 7 5 3 11 11 C 1.46493 * 120.00421 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47280 * 270.00049 * 11 2 1 13 13 O 1.42898 * 109.47021 * 65.00263 * 12 11 2 14 14 C 1.35868 * 117.00018 * 180.02562 * 13 12 11 15 15 C 1.38823 * 119.94018 * 179.97438 * 14 13 12 16 16 C 1.37916 * 120.06240 * 179.97438 * 15 14 13 17 17 C 1.39340 * 119.94111 * 0.02562 * 16 15 14 18 18 C 1.48427 * 120.06656 * 179.97438 * 17 16 15 19 19 N 1.34059 * 126.67235 * 0.02562 * 18 17 16 20 20 N 1.28989 * 107.26752 * 179.97438 * 19 18 17 21 21 N 1.28728 * 108.94417 * 359.97438 * 20 19 18 22 22 H 0.97011 * 125.34130 * 179.97438 * 21 20 19 23 23 N 1.28873 * 109.32413 * 0.02562 * 21 20 19 24 24 C 1.39349 * 119.87448 * 0.24707 * 17 16 15 25 25 C 1.37920 * 119.93695 * 359.51585 * 24 17 16 26 26 H 1.08997 * 109.46927 * 275.10107 * 1 2 3 27 27 H 1.08996 * 109.47606 * 35.10487 * 1 2 3 28 28 H 1.09002 * 109.46783 * 155.10876 * 1 2 3 29 29 H 0.97003 * 120.00090 * 179.97438 * 6 5 3 30 30 H 1.09003 * 109.47168 * 149.99992 * 11 2 1 31 31 H 1.09000 * 109.47110 * 29.99875 * 11 2 1 32 32 H 1.08993 * 109.46945 * 304.99534 * 12 11 2 33 33 H 1.09002 * 109.46975 * 185.00151 * 12 11 2 34 34 H 1.08000 * 119.96933 * 359.97438 * 15 14 13 35 35 H 1.08002 * 120.03151 * 180.02562 * 16 15 14 36 36 H 1.07996 * 120.03187 * 179.72668 * 24 17 16 37 37 H 1.07991 * 119.96947 * 180.22660 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1790 1.2153 -0.3255 5 6 1.5206 2.3506 0.4183 6 7 0.3876 2.2836 1.0847 7 14 2.2822 4.0128 0.0355 8 1 1.8677 4.4460 -1.3230 9 1 1.8221 5.0101 1.0350 10 1 3.7621 3.9036 0.0903 11 6 2.1976 -1.2686 0.0006 12 6 2.4526 -1.7097 1.4432 13 8 1.2062 -1.9927 2.0822 14 6 1.2554 -2.3997 3.3776 15 6 0.0806 -2.6905 4.0576 16 6 0.1278 -3.1044 5.3724 17 6 1.3560 -3.2300 6.0183 18 6 1.4099 -3.6747 7.4334 19 7 0.3665 -3.9894 8.2141 20 7 0.8382 -4.3246 9.3669 21 7 2.1218 -4.2326 9.3360 22 1 2.7165 -4.4290 10.0769 23 7 2.4931 -3.8378 8.1668 24 6 2.5333 -2.9320 5.3350 25 6 2.4806 -2.5232 4.0188 26 1 -0.3633 0.0914 1.0236 27 1 -0.3634 0.8407 -0.5909 28 1 -0.3633 -0.9322 -0.4326 29 1 -0.0519 3.0973 1.3773 30 1 3.1500 -1.1384 -0.5133 31 1 1.6085 -2.0285 -0.5129 32 1 2.9643 -0.9122 1.9819 33 1 3.0734 -2.6056 1.4449 34 1 -0.8711 -2.5926 3.5566 35 1 -0.7865 -3.3309 5.9008 36 1 3.4863 -3.0242 5.8345 37 1 3.3929 -2.2956 3.4877 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591037207.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:06 Heat of formation + Delta-G solvation = 139.133481 kcal Electronic energy + Delta-G solvation = -21869.614615 eV Core-core repulsion = 18458.555821 eV Total energy + Delta-G solvation = -3411.058794 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.50626 -39.80604 -37.45639 -35.38590 -34.37218 -33.36608 -31.61759 -30.95770 -29.71506 -28.36330 -25.78508 -24.83601 -24.29473 -23.57230 -22.09443 -21.35169 -20.28616 -19.22513 -17.96907 -17.20600 -16.67534 -16.26281 -15.52335 -15.49176 -14.60398 -14.52723 -13.94728 -13.55046 -13.41886 -13.29899 -12.98796 -12.69296 -12.51102 -12.35990 -11.83449 -11.47849 -11.39760 -11.24168 -11.10540 -11.07960 -10.82175 -10.70691 -10.55401 -10.20436 -10.12281 -9.92665 -9.75492 -8.91652 -8.52813 -7.82429 -6.77576 -5.70178 -3.15386 0.79987 1.18953 1.49051 2.14241 2.42241 3.38866 3.44935 3.46431 3.64548 3.74735 3.95908 4.16621 4.50942 4.96975 5.05591 5.24436 5.35450 5.37506 5.42567 5.45207 5.62734 5.75556 5.81835 6.00850 6.04244 6.14005 6.21967 6.32996 6.45154 6.51688 6.55487 6.63127 6.86238 6.89157 7.45902 7.78167 7.84832 7.91482 8.07577 8.39673 9.24725 9.88383 10.37270 11.33979 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.024348 B = 0.003220 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.700229 B = 8692.551315 C = 9040.503061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.169 3.831 2 N -0.596 5.596 3 C -0.263 4.263 4 H 0.069 0.931 5 C 0.004 3.996 6 N -0.900 5.900 7 Si 0.903 3.097 8 H -0.287 1.287 9 H -0.292 1.292 10 H -0.281 1.281 11 C 0.151 3.849 12 C 0.034 3.966 13 O -0.287 6.287 14 C 0.176 3.824 15 C -0.161 4.161 16 C -0.034 4.034 17 C -0.085 4.085 18 C 0.239 3.761 19 N -0.274 5.274 20 N -0.055 5.055 21 N -0.233 5.233 22 H 0.473 0.527 23 N -0.305 5.305 24 C -0.035 4.035 25 C -0.219 4.219 26 H 0.034 0.966 27 H 0.039 0.961 28 H -0.003 1.003 29 H 0.252 0.748 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.044 0.956 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.130 0.870 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.181 -13.974 11.550 18.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.319 5.319 3 C -0.393 4.393 4 H 0.087 0.913 5 C -0.195 4.195 6 N -0.544 5.544 7 Si 0.733 3.267 8 H -0.214 1.214 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.023 3.977 12 C -0.044 4.044 13 O -0.198 6.198 14 C 0.127 3.873 15 C -0.180 4.180 16 C -0.054 4.054 17 C -0.089 4.089 18 C -0.040 4.040 19 N -0.147 5.147 20 N -0.050 5.050 21 N -0.078 5.078 22 H 0.327 0.673 23 N -0.157 5.157 24 C -0.055 4.055 25 C -0.238 4.238 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.016 0.984 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.148 0.852 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.623 -13.979 12.028 18.794 hybrid contribution 1.280 1.077 0.230 1.688 sum 4.902 -12.902 12.257 18.459 Atomic orbital electron populations 1.20761 0.82045 0.95107 0.99664 1.43958 1.02244 1.00234 1.85427 1.19200 0.97067 0.85082 1.37901 0.91337 1.24980 0.97837 0.98313 0.98370 1.70108 1.18649 1.26750 1.38917 0.86310 0.78582 0.84183 0.77645 1.21448 1.21782 1.20625 1.20975 0.97121 0.89121 0.90522 1.24088 0.83641 0.98287 0.98402 1.86232 1.34192 1.78634 1.20750 1.19434 0.93613 0.89365 0.84929 1.20389 0.97466 1.05875 0.94224 1.20888 0.96742 0.94523 0.93225 1.17008 0.94834 1.10417 0.86606 1.23720 0.83936 0.99487 0.96810 1.76079 1.25938 1.16115 0.96612 1.78866 0.93204 1.15558 1.17372 1.47684 1.06397 1.42666 1.11080 0.67332 1.74940 1.26856 1.20298 0.93557 1.20849 0.97165 0.94212 0.93289 1.21220 0.97689 1.08723 0.96132 0.94800 0.94271 0.98402 0.93747 0.91401 0.93277 0.91629 0.93809 0.84374 0.84455 0.85246 0.84772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.22 8.62 59.85 0.52 4.74 16 2 N -0.60 -14.81 2.89 -181.13 -0.52 -15.33 16 3 C -0.26 -7.11 9.68 -15.06 -0.15 -7.25 16 4 H 0.07 1.78 7.86 -52.49 -0.41 1.37 16 5 C 0.00 0.11 5.06 -17.43 -0.09 0.02 16 6 N -0.90 -26.32 10.67 55.49 0.59 -25.73 16 7 Si 0.90 21.74 29.58 -169.99 -5.03 16.71 16 8 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 9 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 C 0.15 2.95 6.11 -4.05 -0.02 2.93 16 12 C 0.03 0.61 5.08 37.16 0.19 0.79 16 13 O -0.29 -5.52 9.69 -19.33 -0.19 -5.71 16 14 C 0.18 2.96 6.69 -39.15 -0.26 2.70 16 15 C -0.16 -2.46 9.97 -39.48 -0.39 -2.85 16 16 C -0.03 -0.47 9.70 -39.29 -0.38 -0.85 16 17 C -0.08 -1.19 5.88 -104.88 -0.62 -1.80 16 18 C 0.24 3.23 7.93 -156.30 -1.24 1.99 16 19 N -0.27 -3.75 12.23 32.15 0.39 -3.36 16 20 N -0.05 -0.62 13.47 60.35 0.81 0.19 16 21 N -0.23 -2.02 7.90 60.35 0.48 -1.55 16 22 H 0.47 1.68 8.96 -340.35 -3.05 -1.37 16 23 N -0.30 -3.53 12.08 32.17 0.39 -3.14 16 24 C -0.03 -0.47 9.69 -39.28 -0.38 -0.85 16 25 C -0.22 -3.26 9.02 -39.48 -0.36 -3.61 16 26 H 0.03 0.93 7.40 -51.93 -0.38 0.54 16 27 H 0.04 1.05 7.21 -51.93 -0.37 0.67 16 28 H 0.00 -0.06 7.84 -51.93 -0.41 -0.46 16 29 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.07 1.22 8.03 -51.93 -0.42 0.80 16 31 H 0.05 0.89 7.86 -51.93 -0.41 0.48 16 32 H 0.07 1.29 7.65 -51.93 -0.40 0.89 16 33 H 0.04 0.63 7.66 -51.93 -0.40 0.23 16 34 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 35 H 0.14 1.68 7.88 -52.49 -0.41 1.27 16 36 H 0.13 1.52 7.88 -52.49 -0.41 1.11 16 37 H 0.13 1.84 6.28 -52.49 -0.33 1.51 16 LS Contribution 322.13 15.07 4.85 4.85 Total: -1.00 -32.69 322.13 -8.37 -41.06 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -6.96 Total: -3.95 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -3.18 Total: -4.04 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: 2.14 Total: -48.92 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.19 Total: -5.71 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.69 -8.37 -41.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591037207.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.195 kcal (2) G-P(sol) polarization free energy of solvation -32.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds