Wall clock time and date at job start Tue Mar 31 2020 06:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36944 * 119.99640 * 2 1 4 4 H 1.07994 * 119.99701 * 200.36594 * 3 2 1 5 5 C 1.38811 * 120.00014 * 20.36258 * 3 2 1 6 6 N 1.31616 * 119.99965 * 14.99646 * 5 3 2 7 7 Si 1.86803 * 120.00036 * 194.99328 * 5 3 2 8 8 H 1.48496 * 109.46746 * 85.00593 * 7 5 3 9 9 H 1.48498 * 109.47220 * 205.00489 * 7 5 3 10 10 H 1.48500 * 109.46890 * 325.00538 * 7 5 3 11 11 C 1.46493 * 120.00421 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47280 * 270.00049 * 11 2 1 13 13 O 1.42898 * 109.47021 * 65.00263 * 12 11 2 14 14 C 1.35868 * 117.00018 * 180.02562 * 13 12 11 15 15 C 1.38823 * 119.94018 * 179.97438 * 14 13 12 16 16 C 1.37916 * 120.06240 * 179.97438 * 15 14 13 17 17 C 1.39340 * 119.94111 * 0.02562 * 16 15 14 18 18 C 1.48427 * 120.06656 * 179.97438 * 17 16 15 19 19 N 1.34059 * 126.67235 * 0.02562 * 18 17 16 20 20 N 1.28989 * 107.26752 * 179.97438 * 19 18 17 21 21 N 1.28728 * 108.94417 * 359.97438 * 20 19 18 22 22 H 0.97011 * 125.34130 * 179.97438 * 21 20 19 23 23 N 1.28873 * 109.32413 * 0.02562 * 21 20 19 24 24 C 1.39349 * 119.87448 * 0.24707 * 17 16 15 25 25 C 1.37920 * 119.93695 * 359.51585 * 24 17 16 26 26 H 1.08997 * 109.46927 * 275.10107 * 1 2 3 27 27 H 1.08996 * 109.47606 * 35.10487 * 1 2 3 28 28 H 1.09002 * 109.46783 * 155.10876 * 1 2 3 29 29 H 0.97003 * 120.00090 * 179.97438 * 6 5 3 30 30 H 1.09003 * 109.47168 * 149.99992 * 11 2 1 31 31 H 1.09000 * 109.47110 * 29.99875 * 11 2 1 32 32 H 1.08993 * 109.46945 * 304.99534 * 12 11 2 33 33 H 1.09002 * 109.46975 * 185.00151 * 12 11 2 34 34 H 1.08000 * 119.96933 * 359.97438 * 15 14 13 35 35 H 1.08002 * 120.03151 * 180.02562 * 16 15 14 36 36 H 1.07996 * 120.03187 * 179.72668 * 24 17 16 37 37 H 1.07991 * 119.96947 * 180.22660 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1790 1.2153 -0.3255 5 6 1.5206 2.3506 0.4183 6 7 0.3876 2.2836 1.0847 7 14 2.2822 4.0128 0.0355 8 1 1.8677 4.4460 -1.3230 9 1 1.8221 5.0101 1.0350 10 1 3.7621 3.9036 0.0903 11 6 2.1976 -1.2686 0.0006 12 6 2.4526 -1.7097 1.4432 13 8 1.2062 -1.9927 2.0822 14 6 1.2554 -2.3997 3.3776 15 6 0.0806 -2.6905 4.0576 16 6 0.1278 -3.1044 5.3724 17 6 1.3560 -3.2300 6.0183 18 6 1.4099 -3.6747 7.4334 19 7 0.3665 -3.9894 8.2141 20 7 0.8382 -4.3246 9.3669 21 7 2.1218 -4.2326 9.3360 22 1 2.7165 -4.4290 10.0769 23 7 2.4931 -3.8378 8.1668 24 6 2.5333 -2.9320 5.3350 25 6 2.4806 -2.5232 4.0188 26 1 -0.3633 0.0914 1.0236 27 1 -0.3634 0.8407 -0.5909 28 1 -0.3633 -0.9322 -0.4326 29 1 -0.0519 3.0973 1.3773 30 1 3.1500 -1.1384 -0.5133 31 1 1.6085 -2.0285 -0.5129 32 1 2.9643 -0.9122 1.9819 33 1 3.0734 -2.6056 1.4449 34 1 -0.8711 -2.5926 3.5566 35 1 -0.7865 -3.3309 5.9008 36 1 3.4863 -3.0242 5.8345 37 1 3.3929 -2.2956 3.4877 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591037207.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:05 Heat of formation + Delta-G solvation = 117.736824 kcal Electronic energy + Delta-G solvation = -21870.542443 eV Core-core repulsion = 18458.555821 eV Total energy + Delta-G solvation = -3411.986623 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.42111 -41.03413 -38.74247 -37.18975 -35.31295 -34.38221 -33.46565 -32.11752 -31.01657 -29.87907 -27.83340 -25.81997 -25.58543 -24.87568 -23.45724 -22.52120 -21.84707 -20.13374 -19.28554 -18.54470 -18.10697 -17.39828 -17.07321 -16.84787 -16.35082 -15.63234 -15.34257 -15.01251 -14.98798 -14.66462 -14.34723 -14.03114 -13.74831 -13.62750 -13.11237 -12.98378 -12.82215 -12.68597 -12.61413 -12.37255 -12.29204 -12.20322 -12.07418 -11.95203 -11.76581 -11.58360 -11.26980 -10.59985 -10.03225 -9.01941 -8.78206 -7.78043 -5.24575 -0.21388 0.21601 0.36962 1.34871 1.45979 1.48211 1.50166 1.57683 2.40153 2.54866 2.72337 2.82212 3.19511 3.34822 3.72398 3.87065 3.96142 4.19745 4.26984 4.37484 4.44914 4.46639 4.53504 4.57506 4.65049 4.91488 4.95647 5.04488 5.11703 5.24284 5.36927 5.38616 5.43038 5.64990 5.67784 5.73054 5.82607 6.34804 6.57919 7.14848 7.18309 7.91323 8.35888 9.25133 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.024348 B = 0.003220 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.700229 B = 8692.551315 C = 9040.503061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.187 3.813 2 N -0.614 5.614 3 C -0.263 4.263 4 H 0.079 0.921 5 C -0.055 4.055 6 N -0.935 5.935 7 Si 0.965 3.035 8 H -0.287 1.287 9 H -0.300 1.300 10 H -0.266 1.266 11 C 0.144 3.856 12 C 0.042 3.958 13 O -0.315 6.315 14 C 0.146 3.854 15 C -0.170 4.170 16 C -0.032 4.032 17 C -0.083 4.083 18 C 0.224 3.776 19 N -0.298 5.298 20 N -0.057 5.057 21 N -0.201 5.201 22 H 0.494 0.506 23 N -0.301 5.301 24 C -0.032 4.032 25 C -0.219 4.219 26 H 0.002 0.998 27 H 0.011 0.989 28 H 0.025 0.975 29 H 0.245 0.755 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.138 0.862 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.043 -15.135 12.407 20.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.337 5.337 3 C -0.393 4.393 4 H 0.096 0.904 5 C -0.250 4.250 6 N -0.582 5.582 7 Si 0.794 3.206 8 H -0.214 1.214 9 H -0.227 1.227 10 H -0.191 1.191 11 C 0.018 3.982 12 C -0.035 4.035 13 O -0.227 6.227 14 C 0.098 3.902 15 C -0.189 4.189 16 C -0.052 4.052 17 C -0.087 4.087 18 C -0.056 4.056 19 N -0.170 5.170 20 N -0.052 5.052 21 N -0.052 5.052 22 H 0.353 0.647 23 N -0.153 5.153 24 C -0.052 4.052 25 C -0.237 4.237 26 H 0.021 0.979 27 H 0.029 0.971 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.102 0.898 34 H 0.156 0.844 35 H 0.168 0.832 36 H 0.168 0.832 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.525 -15.187 12.901 20.679 hybrid contribution 0.759 1.284 0.099 1.495 sum 6.285 -13.903 13.000 20.045 Atomic orbital electron populations 1.20428 0.82821 0.95179 0.97420 1.44176 1.02205 1.01630 1.85651 1.19602 0.97392 0.86082 1.36273 0.90375 1.25748 0.98618 1.01670 0.99012 1.70292 1.20290 1.26864 1.40771 0.85305 0.78453 0.79955 0.76860 1.21357 1.22715 1.19084 1.21226 0.97717 0.87266 0.92007 1.23831 0.83775 0.99319 0.96560 1.86168 1.34802 1.79628 1.22143 1.19678 0.94903 0.91127 0.84479 1.20513 0.97304 1.06190 0.94844 1.21011 0.97548 0.94028 0.92640 1.17175 0.94932 1.09475 0.87126 1.23629 0.84462 1.00655 0.96827 1.76067 1.26645 1.17049 0.97263 1.78818 0.94027 1.15686 1.16675 1.47751 1.06126 1.40364 1.10955 0.64699 1.74892 1.26332 1.19951 0.94154 1.21044 0.97976 0.93417 0.92768 1.21354 0.97336 1.08368 0.96661 0.97923 0.97051 0.95657 0.94607 0.89515 0.91586 0.93876 0.89758 0.84411 0.83165 0.83161 0.83695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.52 8.62 127.77 1.10 10.62 16 2 N -0.61 -30.36 2.89 -726.96 -2.10 -32.46 16 3 C -0.26 -14.17 9.68 84.03 0.81 -13.35 16 4 H 0.08 3.97 7.86 -2.91 -0.02 3.95 16 5 C -0.06 -3.11 5.06 84.86 0.43 -2.68 16 6 N -0.94 -56.34 10.67 21.65 0.23 -56.11 16 7 Si 0.97 45.07 29.58 68.60 2.03 47.10 16 8 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 9 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 10 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 11 C 0.14 5.41 6.11 86.38 0.53 5.94 16 12 C 0.04 1.47 5.08 71.98 0.37 1.83 16 13 O -0.32 -12.11 9.69 -92.07 -0.89 -13.00 16 14 C 0.15 4.91 6.69 22.55 0.15 5.06 16 15 C -0.17 -5.24 9.97 22.33 0.22 -5.02 16 16 C -0.03 -0.88 9.70 22.46 0.22 -0.66 16 17 C -0.08 -2.23 5.88 -20.03 -0.12 -2.34 16 18 C 0.22 5.64 7.93 137.36 1.09 6.73 16 19 N -0.30 -7.70 12.23 -52.20 -0.64 -8.33 16 20 N -0.06 -1.18 13.47 37.02 0.50 -0.69 16 21 N -0.20 -2.96 7.90 37.02 0.29 -2.67 16 22 H 0.49 1.98 8.96 -347.52 -3.12 -1.14 16 23 N -0.30 -6.21 12.08 -52.14 -0.63 -6.84 16 24 C -0.03 -0.81 9.69 22.46 0.22 -0.60 16 25 C -0.22 -6.26 9.02 22.34 0.20 -6.06 16 26 H 0.00 0.14 7.40 -2.39 -0.02 0.12 16 27 H 0.01 0.60 7.21 -2.39 -0.02 0.58 16 28 H 0.02 1.11 7.84 -2.39 -0.02 1.09 16 29 H 0.24 14.45 8.31 -92.71 -0.77 13.68 16 30 H 0.09 2.90 8.03 -2.39 -0.02 2.88 16 31 H 0.07 2.25 7.86 -2.39 -0.02 2.23 16 32 H 0.04 1.67 7.65 -2.39 -0.02 1.65 16 33 H 0.08 2.21 7.66 -2.39 -0.02 2.19 16 34 H 0.14 4.12 8.06 -2.91 -0.02 4.09 16 35 H 0.15 3.61 7.88 -2.91 -0.02 3.59 16 36 H 0.15 3.14 7.88 -2.91 -0.02 3.12 16 37 H 0.15 3.73 6.28 -2.92 -0.02 3.71 16 Total: -1.00 -70.83 322.13 2.01 -68.82 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -2.00 Total: 4.69 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 5.22 Total: -0.52 kcal Atomic # 7 Polarization: -104.75 SS G_CDS: -2.35 Total: -107.09 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -0.89 Total: -13.00 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -70.83 2.01 -68.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591037207.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.562 kcal (2) G-P(sol) polarization free energy of solvation -70.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds