Wall clock time and date at job start Tue Mar 31 2020 06:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00166 * 2 1 4 4 H 1.48504 * 109.46730 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47166 * 299.99570 * 3 2 1 6 6 H 1.48502 * 109.47071 * 59.99881 * 3 2 1 7 7 C 1.37873 * 119.99757 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00102 * 180.02562 * 7 2 1 9 9 C 1.50709 * 120.00194 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47002 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46762 * 179.97438 * 10 9 7 12 12 N 1.46508 * 109.47067 * 180.02562 * 11 10 9 13 13 C 1.38883 * 119.99956 * 180.02562 * 12 11 10 14 14 C 1.39136 * 119.52967 * 359.97438 * 13 12 11 15 15 C 1.38234 * 119.38154 * 179.97438 * 14 13 12 16 16 C 1.39681 * 118.48740 * 0.02562 * 15 14 13 17 17 C 1.48316 * 120.48887 * 179.97438 * 16 15 14 18 18 N 1.34092 * 126.68162 * 179.68416 * 17 16 15 19 19 N 1.28988 * 107.26230 * 179.83521 * 18 17 16 20 20 N 1.28726 * 108.95548 * 0.43940 * 19 18 17 21 21 H 0.97001 * 125.33074 * 179.75735 * 20 19 18 22 22 N 1.28865 * 109.33731 * 359.72155 * 20 19 18 23 23 C 1.40048 * 119.02651 * 0.25155 * 16 15 14 24 24 N 1.38762 * 119.74400 * 179.72742 * 23 16 15 25 25 N 1.32388 * 120.51323 * 359.49542 * 23 16 15 26 26 H 0.97001 * 119.99601 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.46581 * 60.00401 * 9 7 2 28 28 H 1.08993 * 109.47297 * 300.00348 * 9 7 2 29 29 H 1.09001 * 109.47330 * 60.00574 * 10 9 7 30 30 H 1.08993 * 109.47541 * 300.00398 * 10 9 7 31 31 H 1.08998 * 109.47084 * 60.00860 * 11 10 9 32 32 H 1.08993 * 109.47536 * 300.00546 * 11 10 9 33 33 H 0.96997 * 119.99511 * 0.02562 * 12 11 10 34 34 H 1.07996 * 120.30948 * 0.02775 * 14 13 12 35 35 H 1.08005 * 120.75407 * 180.02562 * 15 14 13 36 36 H 0.97006 * 119.99919 * 359.97438 * 24 23 16 37 37 H 0.97005 * 120.00213 * 179.97438 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0015 11 6 1.4800 -4.9871 0.0033 12 7 2.4320 -6.1007 0.0037 13 6 1.9690 -7.4101 0.0047 14 6 0.5990 -7.6530 0.0060 15 6 0.1416 -8.9575 0.0065 16 6 1.0796 -9.9925 0.0063 17 6 0.6379 -11.4083 0.0074 18 7 1.4260 -12.4933 0.0014 19 7 0.6544 -13.5269 0.0085 20 7 -0.5714 -13.1336 0.0092 21 1 -1.3472 -13.7158 0.0106 22 7 -0.6062 -11.8455 0.0085 23 6 2.4433 -9.6736 0.0109 24 7 3.3879 -10.6900 0.0165 25 7 2.8382 -8.4100 0.0054 26 1 -0.4849 0.8401 -0.0004 27 1 0.6240 -2.5575 -0.8880 28 1 0.6246 -2.5563 0.8919 29 1 2.8724 -3.6040 0.8910 30 1 2.8711 -3.6048 -0.8889 31 1 0.8525 -5.0455 -0.8860 32 1 0.8543 -5.0442 0.8939 33 1 3.3857 -5.9234 0.0032 34 1 -0.1004 -6.8302 0.0056 35 1 -0.9171 -9.1715 0.0070 36 1 3.1027 -11.6172 0.0176 37 1 4.3335 -10.4735 0.0194 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592676259.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:31 Heat of formation + Delta-G solvation = 154.745679 kcal Electronic energy + Delta-G solvation = -21163.911087 eV Core-core repulsion = 17785.822040 eV Total energy + Delta-G solvation = -3378.089047 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.59630 -40.23173 -36.91265 -34.85261 -34.15366 -34.02461 -33.11620 -31.77144 -30.88292 -28.50366 -26.65341 -24.97403 -24.11024 -23.33927 -22.57714 -21.38127 -20.42109 -19.41859 -17.61825 -17.43516 -17.29994 -16.41811 -16.26573 -15.74954 -15.09330 -14.93814 -14.44083 -14.16443 -14.14751 -13.95354 -13.08236 -12.81348 -12.35474 -12.35274 -12.10620 -11.83154 -11.62700 -11.34653 -11.31433 -11.06924 -10.84000 -10.75302 -10.57887 -9.92323 -9.70767 -9.58545 -9.47900 -9.15217 -8.50346 -8.40485 -7.34535 -6.05393 -4.07970 0.76996 1.09734 1.62591 2.06741 2.34047 3.05465 3.28617 3.36464 3.40308 3.64935 3.86772 4.04320 4.05001 4.42500 4.80231 5.07551 5.24094 5.26512 5.31045 5.43303 5.56898 5.65710 5.65947 5.97176 6.02940 6.17237 6.28754 6.39664 6.52681 6.63986 6.91591 7.03928 7.34080 7.50095 7.59019 7.70767 7.80825 7.93317 7.99707 8.34639 8.41503 8.98717 9.56663 11.05941 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.047347 B = 0.002323 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.234585 B =12050.494188 C =12615.974589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.120 3.880 12 N -0.707 5.707 13 C 0.473 3.527 14 C -0.295 4.295 15 C 0.046 3.954 16 C -0.226 4.226 17 C 0.263 3.737 18 N -0.304 5.304 19 N -0.048 5.048 20 N -0.228 5.228 21 H 0.474 0.526 22 N -0.311 5.311 23 C 0.495 3.505 24 N -0.839 5.839 25 N -0.608 5.608 26 H 0.261 0.739 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.405 0.595 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.420 0.580 37 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.562 -25.557 0.047 25.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.159 4.159 11 C -0.003 4.003 12 N -0.335 5.335 13 C 0.232 3.768 14 C -0.322 4.322 15 C 0.019 3.981 16 C -0.240 4.240 17 C -0.015 4.015 18 N -0.178 5.178 19 N -0.043 5.043 20 N -0.075 5.075 21 H 0.328 0.672 22 N -0.163 5.163 23 C 0.250 3.750 24 N -0.388 5.388 25 N -0.338 5.338 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.240 0.760 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.260 0.740 37 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 0.057 -25.755 0.041 25.756 hybrid contribution -0.396 0.679 0.003 0.786 sum -0.339 -25.077 0.043 25.079 Atomic orbital electron populations 1.69965 1.06044 1.26611 1.50720 1.25021 0.94870 0.99333 0.95247 0.86528 0.80106 0.83716 0.77605 1.19734 1.20991 1.20996 1.21241 0.93092 0.90899 1.50753 0.92562 1.19035 0.93812 0.90866 0.97624 1.21883 0.99867 0.92928 1.01259 1.21811 0.91941 0.85065 1.01502 1.45050 1.10326 1.01496 1.76651 1.18163 0.88531 0.85127 0.85003 1.21131 0.94521 0.97608 1.18893 1.20990 0.98984 0.90484 0.87610 1.17046 0.92506 0.86161 1.28313 1.23407 0.84512 0.95223 0.98398 1.75289 1.26069 0.95241 1.21225 1.78777 0.88938 1.22010 1.14598 1.47612 1.09087 1.04377 1.46387 0.67214 1.74985 1.23454 0.93342 1.24471 1.17662 0.85862 0.86437 0.85072 1.42964 1.07736 1.07756 1.80341 1.66621 1.37903 0.97631 1.31595 0.92977 0.96229 0.96225 0.92530 0.92518 0.91668 0.91672 0.75964 0.84309 0.84373 0.74019 0.77099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.24 9.11 -34.44 -0.31 -14.55 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.26 5.27 -26.73 -0.14 -2.40 16 11 C 0.12 1.85 4.88 -4.04 -0.02 1.83 16 12 N -0.71 -10.08 5.72 -60.43 -0.35 -10.43 16 13 C 0.47 6.85 7.64 -155.06 -1.18 5.67 16 14 C -0.30 -3.89 9.30 -39.25 -0.37 -4.25 16 15 C 0.05 0.56 9.81 -39.04 -0.38 0.18 16 16 C -0.23 -2.92 5.91 -104.53 -0.62 -3.53 16 17 C 0.26 3.14 7.91 -156.28 -1.24 1.91 16 18 N -0.30 -3.46 9.47 32.14 0.30 -3.15 16 19 N -0.05 -0.45 13.47 60.35 0.81 0.36 16 20 N -0.23 -1.64 7.90 60.35 0.48 -1.17 16 21 H 0.47 1.07 8.96 -340.36 -3.05 -1.98 16 22 N -0.31 -3.16 12.15 32.15 0.39 -2.77 16 23 C 0.49 6.62 7.76 -154.92 -1.20 5.42 16 24 N -0.84 -9.19 9.00 31.26 0.28 -8.91 16 25 N -0.61 -8.83 10.41 -11.42 -0.12 -8.94 16 26 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 0.99 7.91 -51.93 -0.41 0.58 16 32 H 0.07 0.99 7.91 -51.93 -0.41 0.58 16 33 H 0.40 5.51 8.59 -40.82 -0.35 5.16 16 34 H 0.14 1.70 6.66 -52.49 -0.35 1.35 16 35 H 0.14 1.40 7.95 -52.48 -0.42 0.98 16 36 H 0.42 4.44 5.36 -40.82 -0.22 4.22 16 37 H 0.40 3.72 8.95 -40.82 -0.37 3.35 16 LS Contribution 321.21 15.07 4.84 4.84 Total: -1.00 -32.02 321.21 -10.15 -42.17 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -6.81 Total: 5.04 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -5.70 Total: -7.80 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: 2.54 Total: -60.45 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.02 -10.15 -42.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592676259.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.915 kcal (2) G-P(sol) polarization free energy of solvation -32.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds