Wall clock time and date at job start Tue Mar 31 2020 06:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00166 * 2 1 4 4 H 1.48504 * 109.46730 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47166 * 299.99570 * 3 2 1 6 6 H 1.48502 * 109.47071 * 59.99881 * 3 2 1 7 7 C 1.37873 * 119.99757 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00102 * 180.02562 * 7 2 1 9 9 C 1.50709 * 120.00194 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47002 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46762 * 179.97438 * 10 9 7 12 12 N 1.46508 * 109.47067 * 180.02562 * 11 10 9 13 13 C 1.38883 * 119.99956 * 180.02562 * 12 11 10 14 14 C 1.39136 * 119.52967 * 359.97438 * 13 12 11 15 15 C 1.38234 * 119.38154 * 179.97438 * 14 13 12 16 16 C 1.39681 * 118.48740 * 0.02562 * 15 14 13 17 17 C 1.48316 * 120.48887 * 179.97438 * 16 15 14 18 18 N 1.34092 * 126.68162 * 179.68416 * 17 16 15 19 19 N 1.28988 * 107.26230 * 179.83521 * 18 17 16 20 20 N 1.28726 * 108.95548 * 0.43940 * 19 18 17 21 21 H 0.97001 * 125.33074 * 179.75735 * 20 19 18 22 22 N 1.28865 * 109.33731 * 359.72155 * 20 19 18 23 23 C 1.40048 * 119.02651 * 0.25155 * 16 15 14 24 24 N 1.38762 * 119.74400 * 179.72742 * 23 16 15 25 25 N 1.32388 * 120.51323 * 359.49542 * 23 16 15 26 26 H 0.97001 * 119.99601 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.46581 * 60.00401 * 9 7 2 28 28 H 1.08993 * 109.47297 * 300.00348 * 9 7 2 29 29 H 1.09001 * 109.47330 * 60.00574 * 10 9 7 30 30 H 1.08993 * 109.47541 * 300.00398 * 10 9 7 31 31 H 1.08998 * 109.47084 * 60.00860 * 11 10 9 32 32 H 1.08993 * 109.47536 * 300.00546 * 11 10 9 33 33 H 0.96997 * 119.99511 * 0.02562 * 12 11 10 34 34 H 1.07996 * 120.30948 * 0.02775 * 14 13 12 35 35 H 1.08005 * 120.75407 * 180.02562 * 15 14 13 36 36 H 0.97006 * 119.99919 * 359.97438 * 24 23 16 37 37 H 0.97005 * 120.00213 * 179.97438 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0015 11 6 1.4800 -4.9871 0.0033 12 7 2.4320 -6.1007 0.0037 13 6 1.9690 -7.4101 0.0047 14 6 0.5990 -7.6530 0.0060 15 6 0.1416 -8.9575 0.0065 16 6 1.0796 -9.9925 0.0063 17 6 0.6379 -11.4083 0.0074 18 7 1.4260 -12.4933 0.0014 19 7 0.6544 -13.5269 0.0085 20 7 -0.5714 -13.1336 0.0092 21 1 -1.3472 -13.7158 0.0106 22 7 -0.6062 -11.8455 0.0085 23 6 2.4433 -9.6736 0.0109 24 7 3.3879 -10.6900 0.0165 25 7 2.8382 -8.4100 0.0054 26 1 -0.4849 0.8401 -0.0004 27 1 0.6240 -2.5575 -0.8880 28 1 0.6246 -2.5563 0.8919 29 1 2.8724 -3.6040 0.8910 30 1 2.8711 -3.6048 -0.8889 31 1 0.8525 -5.0455 -0.8860 32 1 0.8543 -5.0442 0.8939 33 1 3.3857 -5.9234 0.0032 34 1 -0.1004 -6.8302 0.0056 35 1 -0.9171 -9.1715 0.0070 36 1 3.1027 -11.6172 0.0176 37 1 4.3335 -10.4735 0.0194 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592676259.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:31 Heat of formation + Delta-G solvation = 132.399399 kcal Electronic energy + Delta-G solvation = -21164.880094 eV Core-core repulsion = 17785.822040 eV Total energy + Delta-G solvation = -3379.058055 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -45.37390 -41.23693 -38.06615 -36.08233 -35.22471 -34.98673 -34.52007 -33.03445 -32.21217 -29.58309 -28.25384 -25.81971 -25.39527 -24.48098 -23.73467 -22.47570 -21.93487 -20.20064 -18.65626 -18.59584 -18.23982 -18.06512 -17.19120 -16.77295 -16.52374 -16.38619 -15.91013 -15.34353 -15.10873 -14.97657 -14.28084 -14.03621 -13.82325 -13.66482 -13.61434 -13.04726 -12.86036 -12.47879 -12.47445 -12.29375 -12.25074 -12.12270 -12.01110 -11.52398 -11.44766 -11.15491 -10.69454 -10.55542 -10.52508 -9.53696 -8.34185 -8.17792 -6.27468 -0.08696 0.25305 0.63306 1.41062 1.42121 1.43235 1.51094 1.55494 2.00143 2.43596 2.72770 2.96647 3.03393 3.16412 3.20413 3.85150 4.11197 4.17600 4.29627 4.30304 4.41263 4.50122 4.65160 4.73976 5.00907 5.02045 5.04678 5.21348 5.35145 5.46909 5.56036 5.69138 5.77538 5.88616 5.95710 6.27314 6.42031 6.50733 6.82238 6.89866 7.17388 7.41553 7.44546 8.94035 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.047347 B = 0.002323 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.234585 B =12050.494188 C =12615.974589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.000 4.000 3 Si 0.961 3.039 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.541 4.541 8 H 0.060 0.940 9 C 0.026 3.974 10 C -0.106 4.106 11 C 0.136 3.864 12 N -0.708 5.708 13 C 0.458 3.542 14 C -0.303 4.303 15 C 0.051 3.949 16 C -0.230 4.230 17 C 0.246 3.754 18 N -0.318 5.318 19 N -0.049 5.049 20 N -0.200 5.200 21 H 0.494 0.506 22 N -0.309 5.309 23 C 0.481 3.519 24 N -0.830 5.830 25 N -0.621 5.621 26 H 0.263 0.737 27 H -0.001 1.001 28 H -0.001 1.001 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.407 0.593 34 H 0.145 0.855 35 H 0.158 0.842 36 H 0.423 0.577 37 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.398 -26.676 0.050 26.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.786 3.214 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.078 0.922 9 C -0.012 4.012 10 C -0.144 4.144 11 C 0.013 3.987 12 N -0.337 5.337 13 C 0.218 3.782 14 C -0.330 4.330 15 C 0.024 3.976 16 C -0.244 4.244 17 C -0.033 4.033 18 N -0.191 5.191 19 N -0.044 5.044 20 N -0.051 5.051 21 H 0.353 0.647 22 N -0.161 5.161 23 C 0.236 3.764 24 N -0.379 5.379 25 N -0.351 5.351 26 H 0.072 0.928 27 H 0.018 0.982 28 H 0.018 0.982 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.243 0.757 34 H 0.163 0.837 35 H 0.176 0.824 36 H 0.263 0.737 37 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 0.238 -26.935 0.044 26.936 hybrid contribution -0.524 0.846 0.002 0.995 sum -0.286 -26.089 0.046 26.090 Atomic orbital electron populations 1.70084 1.07620 1.27635 1.51806 1.25923 0.95758 1.03182 0.94948 0.85455 0.79118 0.79142 0.77664 1.18710 1.20540 1.20550 1.21719 0.93581 0.92383 1.50208 0.92206 1.18927 0.94320 0.92316 0.95609 1.21590 0.98655 0.92586 1.01544 1.21469 0.91530 0.83945 1.01796 1.44799 1.10098 1.01264 1.77532 1.18297 0.89127 0.84992 0.85819 1.21253 0.94157 0.98353 1.19215 1.21204 0.99909 0.89894 0.86600 1.17206 0.92503 0.87024 1.27623 1.23323 0.85166 0.95078 0.99736 1.75267 1.26672 0.95342 1.21838 1.78735 0.89467 1.21480 1.14745 1.47680 1.09416 1.03860 1.44146 0.64723 1.74935 1.22770 0.94417 1.24024 1.17879 0.86658 0.86457 0.85450 1.42938 1.07890 1.07449 1.79633 1.66576 1.38331 0.98091 1.32089 0.92814 0.98225 0.98218 0.92209 0.92201 0.91443 0.91444 0.75713 0.83699 0.82410 0.73688 0.76286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.24 13.29 21.45 0.28 -54.95 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 3 Si 0.96 43.46 29.54 68.60 2.03 45.49 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.54 -29.68 9.11 25.60 0.23 -29.45 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.03 1.28 4.97 29.85 0.15 1.43 16 10 C -0.11 -3.91 5.27 30.59 0.16 -3.75 16 11 C 0.14 4.14 4.88 86.38 0.42 4.56 16 12 N -0.71 -19.78 5.72 -345.10 -1.98 -21.75 16 13 C 0.46 13.00 7.64 133.08 1.02 14.02 16 14 C -0.30 -7.73 9.30 22.48 0.21 -7.52 16 15 C 0.05 1.17 9.81 22.62 0.22 1.39 16 16 C -0.23 -5.67 5.91 -19.81 -0.12 -5.78 16 17 C 0.25 5.50 7.91 137.30 1.09 6.58 16 18 N -0.32 -6.75 9.47 -52.23 -0.49 -7.25 16 19 N -0.05 -0.84 13.47 37.02 0.50 -0.34 16 20 N -0.20 -2.39 7.90 37.02 0.29 -2.10 16 21 H 0.49 0.86 8.96 -347.53 -3.12 -2.25 16 22 N -0.31 -5.60 12.15 -52.18 -0.63 -6.24 16 23 C 0.48 12.52 7.76 133.37 1.03 13.55 16 24 N -0.83 -17.52 9.00 -55.01 -0.50 -18.02 16 25 N -0.62 -17.70 10.41 -190.05 -1.98 -19.68 16 26 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 27 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 28 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 29 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.07 2.02 7.91 -2.39 -0.02 2.00 16 32 H 0.07 2.02 7.91 -2.39 -0.02 2.00 16 33 H 0.41 10.85 8.59 -92.71 -0.80 10.05 16 34 H 0.15 3.43 6.66 -2.91 -0.02 3.41 16 35 H 0.16 2.90 7.95 -2.91 -0.02 2.87 16 36 H 0.42 8.55 5.36 -92.70 -0.50 8.06 16 37 H 0.41 7.27 8.95 -92.70 -0.83 6.44 16 Total: -1.00 -67.89 321.21 -1.67 -69.55 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: -4.07 Total: 19.81 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 4.88 Total: -4.53 kcal Atomic # 7 Polarization: -125.82 SS G_CDS: -4.50 Total: -130.32 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -67.89 -1.67 -69.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592676259.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.954 kcal (2) G-P(sol) polarization free energy of solvation -67.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds