Wall clock time and date at job start Tue Mar 31 2020 06:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00110 * 2 1 4 4 H 1.48498 * 109.47284 * 240.00327 * 3 2 1 5 5 H 1.48498 * 109.46801 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47060 * 120.00131 * 3 2 1 7 7 C 1.38814 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99538 * 204.74852 * 7 2 1 9 9 N 1.36934 * 120.00411 * 24.74424 * 7 2 1 10 10 C 1.46498 * 120.00032 * 189.28220 * 9 7 2 11 11 C 1.53001 * 109.46926 * 89.99969 * 10 9 7 12 12 C 1.52999 * 109.46922 * 179.97438 * 11 10 9 13 13 H 1.09005 * 110.26959 * 55.62788 * 12 11 10 14 14 C 1.54347 * 110.30394 * 177.80027 * 12 11 10 15 15 C 1.54346 * 102.38905 * 92.57987 * 14 12 11 16 16 C 1.51368 * 105.17510 * 26.34657 * 15 14 12 17 17 C 1.38493 * 130.39938 * 162.82449 * 16 15 14 18 18 C 1.38099 * 120.21725 * 179.97438 * 17 16 15 19 19 C 1.38251 * 119.93868 * 0.05522 * 18 17 16 20 20 C 1.38103 * 119.92974 * 359.97438 * 19 18 17 21 21 C 1.38222 * 109.75465 * 342.81998 * 16 15 14 22 22 C 1.46502 * 119.99685 * 9.28312 * 9 7 2 23 23 C 1.50702 * 109.46925 * 269.20405 * 22 9 7 24 24 O 1.20832 * 120.00147 * 0.02562 * 23 22 9 25 25 O 1.34224 * 119.99887 * 179.97438 * 23 22 9 26 26 H 0.96997 * 119.99940 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.47269 * 329.99904 * 10 9 7 28 28 H 1.08997 * 109.46568 * 209.99750 * 10 9 7 29 29 H 1.09002 * 109.47355 * 60.00044 * 11 10 9 30 30 H 1.08993 * 109.47418 * 300.00074 * 11 10 9 31 31 H 1.08999 * 110.82322 * 334.35236 * 14 12 11 32 32 H 1.09005 * 110.82166 * 210.80143 * 14 12 11 33 33 H 1.08998 * 110.30239 * 267.41552 * 15 14 12 34 34 H 1.08999 * 110.30277 * 145.26827 * 15 14 12 35 35 H 1.08006 * 119.89308 * 359.97265 * 17 16 15 36 36 H 1.08009 * 120.03167 * 180.02562 * 18 17 16 37 37 H 1.07998 * 120.03677 * 179.97438 * 19 18 17 38 38 H 1.08000 * 119.88990 * 179.97438 * 20 19 18 39 39 H 1.09000 * 109.47189 * 29.20444 * 22 9 7 40 40 H 1.08994 * 109.47242 * 149.20733 * 22 9 7 41 41 H 0.96703 * 117.00103 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0158 -1.2452 0.3910 9 7 1.4199 -2.3334 -0.4974 10 6 2.0645 -3.6363 -0.3156 11 6 1.5806 -4.2667 0.9919 12 6 2.2533 -5.6277 1.1815 13 1 3.3375 -5.5215 1.1443 14 6 1.8205 -6.2569 2.5228 15 6 0.6063 -7.1154 2.1093 16 6 0.8376 -7.4530 0.6520 17 6 0.2651 -8.4306 -0.1447 18 6 0.6367 -8.5535 -1.4691 19 6 1.5839 -7.6991 -2.0021 20 6 2.1563 -6.7240 -1.2091 21 6 1.7841 -6.5983 0.1189 22 6 0.1436 -2.2407 -1.2108 23 6 -0.9914 -2.4026 -0.2328 24 8 -0.7583 -2.5770 0.9399 25 8 -2.2614 -2.3520 -0.6643 26 1 -0.4850 0.8400 0.0004 27 1 3.1457 -3.5045 -0.2770 28 1 1.8075 -4.2884 -1.1503 29 1 0.4992 -4.3986 0.9533 30 1 1.8375 -3.6146 1.8266 31 1 1.5257 -5.4862 3.2350 32 1 2.6149 -6.8810 2.9322 33 1 -0.3160 -6.5460 2.2239 34 1 0.5661 -8.0262 2.7067 35 1 -0.4743 -9.0991 0.2712 36 1 0.1880 -9.3167 -2.0878 37 1 1.8759 -7.7940 -3.0375 38 1 2.8965 -6.0572 -1.6260 39 1 0.0688 -1.2678 -1.6966 40 1 0.0900 -3.0275 -1.9631 41 1 -2.9555 -2.4607 0.0002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601073449.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:55 Heat of formation + Delta-G solvation = -48.952663 kcal Electronic energy + Delta-G solvation = -23730.368678 eV Core-core repulsion = 20382.401449 eV Total energy + Delta-G solvation = -3347.967229 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.10122 -38.61315 -36.32562 -35.42938 -34.27451 -32.40467 -31.03692 -29.54189 -28.69562 -27.27035 -25.92885 -23.37751 -22.46841 -21.34895 -20.65034 -19.83962 -19.59104 -16.84651 -16.56475 -16.10242 -15.37216 -15.23285 -14.95574 -14.89432 -14.59610 -14.11539 -13.83445 -13.41699 -13.04246 -12.99610 -12.56804 -12.27980 -12.05919 -11.76882 -11.56409 -11.38694 -11.32350 -10.97147 -10.86353 -10.71918 -10.62909 -10.48238 -10.42268 -10.26060 -9.95746 -9.77823 -9.58078 -9.01549 -8.62492 -8.49005 -8.27027 -7.06781 -5.90829 -3.16536 1.55202 1.58237 3.38020 3.44447 3.45637 3.94751 4.00135 4.39448 4.59871 4.63113 4.78540 5.14120 5.18236 5.18547 5.27443 5.32013 5.40541 5.54557 5.69323 5.79053 5.90134 5.93477 6.01563 6.11033 6.16661 6.27356 6.35444 6.38764 6.40292 6.52794 6.57590 6.65398 6.69365 6.87677 6.98467 7.05348 7.11252 7.18818 7.33527 7.71603 7.95727 8.20284 9.05745 9.52641 9.76896 10.17592 11.21047 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019803 B = 0.005036 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.573724 B = 5558.822663 C = 5805.439269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.002 4.002 3 Si 0.907 3.093 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.284 1.284 7 C -0.249 4.249 8 H 0.081 0.919 9 N -0.570 5.570 10 C 0.145 3.855 11 C -0.121 4.121 12 C -0.054 4.054 13 H 0.074 0.926 14 C -0.116 4.116 15 C -0.080 4.080 16 C -0.099 4.099 17 C -0.112 4.112 18 C -0.128 4.128 19 C -0.123 4.123 20 C -0.105 4.105 21 C -0.073 4.073 22 C 0.190 3.810 23 C 0.479 3.521 24 O -0.514 6.514 25 O -0.546 6.546 26 H 0.257 0.743 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.112 0.888 40 H 0.049 0.951 41 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.987 -14.524 -1.630 14.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.199 4.199 3 Si 0.737 3.263 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.211 1.211 7 C -0.377 4.377 8 H 0.098 0.902 9 N -0.289 5.289 10 C 0.019 3.981 11 C -0.161 4.161 12 C -0.073 4.073 13 H 0.093 0.907 14 C -0.153 4.153 15 C -0.117 4.117 16 C -0.099 4.099 17 C -0.131 4.131 18 C -0.146 4.146 19 C -0.141 4.141 20 C -0.123 4.123 21 C -0.073 4.073 22 C 0.060 3.940 23 C 0.318 3.682 24 O -0.400 6.400 25 O -0.356 6.356 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.130 0.870 40 H 0.067 0.933 41 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 1.311 -14.357 -1.598 14.505 hybrid contribution -0.339 0.923 0.724 1.221 sum 0.972 -13.434 -0.874 13.497 Atomic orbital electron populations 1.69828 1.05259 1.25862 1.54223 1.24737 0.95187 0.98399 1.01612 0.86264 0.78896 0.83070 0.78046 1.21038 1.21757 1.21081 1.19270 0.96800 0.85254 1.36417 0.90150 1.44219 1.18909 1.02740 1.63031 1.21054 0.96262 0.86238 0.94569 1.22256 1.00914 0.91890 1.01046 1.20848 1.00185 0.94930 0.91369 0.90748 1.22342 0.96955 0.98787 0.97246 1.21031 0.99557 0.99540 0.91582 1.20642 0.97054 0.95808 0.96349 1.20558 1.00282 0.98389 0.93825 1.20939 0.98664 0.99972 0.95063 1.20997 0.97629 0.96032 0.99482 1.20715 1.00524 0.98233 0.92861 1.20670 0.96591 0.95769 0.94311 1.20379 0.81234 1.02091 0.90292 1.25330 0.81964 0.69767 0.91105 1.90477 1.84165 1.45807 1.19526 1.84648 1.18467 1.86557 1.45929 0.93248 0.93287 0.93879 0.91476 0.91494 0.90336 0.91595 0.90262 0.91358 0.86810 0.86405 0.86221 0.86076 0.86993 0.93341 0.76726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.66 9.02 55.49 0.50 -25.16 16 2 C 0.00 -0.06 4.89 -17.43 -0.09 -0.14 16 3 Si 0.91 21.52 29.62 -169.99 -5.04 16.48 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.25 -6.62 9.70 -15.06 -0.15 -6.77 16 8 H 0.08 2.10 7.93 -52.48 -0.42 1.68 16 9 N -0.57 -13.83 2.09 -174.61 -0.37 -14.19 16 10 C 0.14 2.93 5.49 -4.04 -0.02 2.91 16 11 C -0.12 -2.37 4.17 -26.73 -0.11 -2.48 16 12 C -0.05 -0.84 2.92 -90.74 -0.26 -1.11 16 13 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 14 C -0.12 -1.59 6.60 -25.32 -0.17 -1.76 16 15 C -0.08 -1.08 6.76 -26.85 -0.18 -1.26 16 16 C -0.10 -1.43 6.14 -104.21 -0.64 -2.07 16 17 C -0.11 -1.47 10.04 -39.54 -0.40 -1.86 16 18 C -0.13 -1.57 10.05 -39.63 -0.40 -1.96 16 19 C -0.12 -1.56 10.05 -39.63 -0.40 -1.95 16 20 C -0.11 -1.49 8.64 -39.54 -0.34 -1.83 16 21 C -0.07 -1.12 5.09 -104.21 -0.53 -1.65 16 22 C 0.19 4.50 5.58 -5.19 -0.03 4.47 16 23 C 0.48 11.67 6.33 36.01 0.23 11.90 16 24 O -0.51 -13.88 14.42 -18.75 -0.27 -14.15 16 25 O -0.55 -11.52 13.42 -39.24 -0.53 -12.05 16 26 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 27 H 0.05 0.95 8.03 -51.93 -0.42 0.53 16 28 H 0.04 0.81 5.69 -51.93 -0.30 0.51 16 29 H 0.07 1.48 6.30 -51.93 -0.33 1.15 16 30 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.08 1.12 7.89 -51.93 -0.41 0.71 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.11 1.24 8.06 -52.48 -0.42 0.82 16 36 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 37 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.12 1.59 7.60 -52.49 -0.40 1.19 16 39 H 0.11 2.86 6.29 -51.93 -0.33 2.54 16 40 H 0.05 1.01 7.90 -51.93 -0.41 0.60 16 41 H 0.38 6.44 9.10 45.56 0.41 6.85 16 LS Contribution 332.24 15.07 5.01 5.01 Total: -1.00 -31.44 332.24 -9.28 -40.72 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -5.10 Total: 8.91 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -3.48 Total: -5.57 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.13 Total: -39.35 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.80 Total: -26.19 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.04 Total: 16.48 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.44 -9.28 -40.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601073449.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.236 kcal (2) G-P(sol) polarization free energy of solvation -31.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds