Wall clock time and date at job start Tue Mar 31 2020 06:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00110 * 2 1 4 4 H 1.48498 * 109.47284 * 240.00327 * 3 2 1 5 5 H 1.48498 * 109.46801 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47060 * 120.00131 * 3 2 1 7 7 C 1.38814 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99538 * 204.74852 * 7 2 1 9 9 N 1.36934 * 120.00411 * 24.74424 * 7 2 1 10 10 C 1.46498 * 120.00032 * 189.28220 * 9 7 2 11 11 C 1.53001 * 109.46926 * 89.99969 * 10 9 7 12 12 C 1.52999 * 109.46922 * 179.97438 * 11 10 9 13 13 H 1.09005 * 110.26959 * 55.62788 * 12 11 10 14 14 C 1.54347 * 110.30394 * 177.80027 * 12 11 10 15 15 C 1.54346 * 102.38905 * 92.57987 * 14 12 11 16 16 C 1.51368 * 105.17510 * 26.34657 * 15 14 12 17 17 C 1.38493 * 130.39938 * 162.82449 * 16 15 14 18 18 C 1.38099 * 120.21725 * 179.97438 * 17 16 15 19 19 C 1.38251 * 119.93868 * 0.05522 * 18 17 16 20 20 C 1.38103 * 119.92974 * 359.97438 * 19 18 17 21 21 C 1.38222 * 109.75465 * 342.81998 * 16 15 14 22 22 C 1.46502 * 119.99685 * 9.28312 * 9 7 2 23 23 C 1.50702 * 109.46925 * 269.20405 * 22 9 7 24 24 O 1.20832 * 120.00147 * 0.02562 * 23 22 9 25 25 O 1.34224 * 119.99887 * 179.97438 * 23 22 9 26 26 H 0.96997 * 119.99940 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.47269 * 329.99904 * 10 9 7 28 28 H 1.08997 * 109.46568 * 209.99750 * 10 9 7 29 29 H 1.09002 * 109.47355 * 60.00044 * 11 10 9 30 30 H 1.08993 * 109.47418 * 300.00074 * 11 10 9 31 31 H 1.08999 * 110.82322 * 334.35236 * 14 12 11 32 32 H 1.09005 * 110.82166 * 210.80143 * 14 12 11 33 33 H 1.08998 * 110.30239 * 267.41552 * 15 14 12 34 34 H 1.08999 * 110.30277 * 145.26827 * 15 14 12 35 35 H 1.08006 * 119.89308 * 359.97265 * 17 16 15 36 36 H 1.08009 * 120.03167 * 180.02562 * 18 17 16 37 37 H 1.07998 * 120.03677 * 179.97438 * 19 18 17 38 38 H 1.08000 * 119.88990 * 179.97438 * 20 19 18 39 39 H 1.09000 * 109.47189 * 29.20444 * 22 9 7 40 40 H 1.08994 * 109.47242 * 149.20733 * 22 9 7 41 41 H 0.96703 * 117.00103 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0158 -1.2452 0.3910 9 7 1.4199 -2.3334 -0.4974 10 6 2.0645 -3.6363 -0.3156 11 6 1.5806 -4.2667 0.9919 12 6 2.2533 -5.6277 1.1815 13 1 3.3375 -5.5215 1.1443 14 6 1.8205 -6.2569 2.5228 15 6 0.6063 -7.1154 2.1093 16 6 0.8376 -7.4530 0.6520 17 6 0.2651 -8.4306 -0.1447 18 6 0.6367 -8.5535 -1.4691 19 6 1.5839 -7.6991 -2.0021 20 6 2.1563 -6.7240 -1.2091 21 6 1.7841 -6.5983 0.1189 22 6 0.1436 -2.2407 -1.2108 23 6 -0.9914 -2.4026 -0.2328 24 8 -0.7583 -2.5770 0.9399 25 8 -2.2614 -2.3520 -0.6643 26 1 -0.4850 0.8400 0.0004 27 1 3.1457 -3.5045 -0.2770 28 1 1.8075 -4.2884 -1.1503 29 1 0.4992 -4.3986 0.9533 30 1 1.8375 -3.6146 1.8266 31 1 1.5257 -5.4862 3.2350 32 1 2.6149 -6.8810 2.9322 33 1 -0.3160 -6.5460 2.2239 34 1 0.5661 -8.0262 2.7067 35 1 -0.4743 -9.0991 0.2712 36 1 0.1880 -9.3167 -2.0878 37 1 1.8759 -7.7940 -3.0375 38 1 2.8965 -6.0572 -1.6260 39 1 0.0688 -1.2678 -1.6966 40 1 0.0900 -3.0275 -1.9631 41 1 -2.9555 -2.4607 0.0002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601073449.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:54 Heat of formation + Delta-G solvation = -65.648851 kcal Electronic energy + Delta-G solvation = -23731.092679 eV Core-core repulsion = 20382.401449 eV Total energy + Delta-G solvation = -3348.691230 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.20749 -40.48236 -37.87808 -36.79935 -36.16449 -34.00229 -32.55469 -30.91138 -29.79427 -29.04770 -27.45126 -25.08129 -23.52466 -22.95241 -21.93995 -21.43574 -20.86177 -18.79038 -18.43395 -17.30591 -16.99469 -16.92517 -16.33973 -16.05142 -15.91949 -15.76055 -15.42372 -15.23249 -14.49890 -14.05322 -13.91136 -13.57343 -13.44235 -13.34756 -13.24147 -13.02506 -12.68553 -12.50386 -12.47896 -12.23980 -12.06432 -12.00045 -11.88259 -11.79401 -11.65515 -11.47168 -11.15892 -10.93283 -10.49948 -9.63070 -9.35949 -8.99606 -7.95897 -5.22126 0.53682 0.56173 1.48834 1.51277 1.58205 2.08337 2.49967 2.81906 2.92655 3.26532 3.51022 3.56100 3.70721 4.12826 4.16641 4.24384 4.27279 4.38302 4.47741 4.58792 4.67918 4.73032 4.74196 4.82709 4.87333 4.93984 4.96223 5.11529 5.18300 5.21628 5.23551 5.27973 5.29243 5.45789 5.62399 5.64301 5.67946 5.69643 5.87485 6.18776 6.20667 6.22605 7.04006 7.64284 7.84674 8.18810 9.14084 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019803 B = 0.005036 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.573724 B = 5558.822663 C = 5805.439269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.052 4.052 3 Si 0.969 3.031 4 H -0.274 1.274 5 H -0.298 1.298 6 H -0.284 1.284 7 C -0.255 4.255 8 H 0.080 0.920 9 N -0.583 5.583 10 C 0.145 3.855 11 C -0.101 4.101 12 C -0.050 4.050 13 H 0.082 0.918 14 C -0.114 4.114 15 C -0.078 4.078 16 C -0.115 4.115 17 C -0.120 4.120 18 C -0.127 4.127 19 C -0.126 4.126 20 C -0.119 4.119 21 C -0.096 4.096 22 C 0.189 3.811 23 C 0.480 3.520 24 O -0.546 6.546 25 O -0.538 6.538 26 H 0.249 0.751 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.039 0.961 30 H 0.031 0.969 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.134 0.866 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.126 0.874 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.405 -16.266 -2.653 16.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.246 4.246 3 Si 0.798 3.202 4 H -0.200 1.200 5 H -0.225 1.225 6 H -0.210 1.210 7 C -0.385 4.385 8 H 0.098 0.902 9 N -0.303 5.303 10 C 0.020 3.980 11 C -0.141 4.141 12 C -0.069 4.069 13 H 0.100 0.900 14 C -0.152 4.152 15 C -0.115 4.115 16 C -0.115 4.115 17 C -0.138 4.138 18 C -0.144 4.144 19 C -0.144 4.144 20 C -0.137 4.137 21 C -0.096 4.096 22 C 0.059 3.941 23 C 0.322 3.678 24 O -0.435 6.435 25 O -0.350 6.350 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.110 0.890 35 H 0.152 0.848 36 H 0.165 0.835 37 H 0.163 0.837 38 H 0.144 0.856 39 H 0.110 0.890 40 H 0.096 0.904 41 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 1.729 -16.124 -2.632 16.428 hybrid contribution -0.522 1.374 1.002 1.779 sum 1.206 -14.750 -1.631 14.889 Atomic orbital electron populations 1.69978 1.06349 1.25695 1.55815 1.25431 0.95910 1.01103 1.02185 0.85298 0.77494 0.79267 0.78123 1.20015 1.22502 1.21045 1.19544 0.96915 0.86392 1.35635 0.90202 1.44400 1.19284 1.03633 1.62937 1.21194 0.96328 0.84976 0.95532 1.21921 0.99347 0.93670 0.99187 1.20730 1.00150 0.92979 0.93005 0.89990 1.22338 0.97929 0.98787 0.96096 1.21009 0.98440 1.00160 0.91875 1.20861 0.97357 0.96441 0.96840 1.20890 1.00455 0.98223 0.94246 1.21347 0.97969 1.00112 0.95013 1.21345 0.97213 0.95297 1.00543 1.20918 1.01035 0.99076 0.92698 1.20684 0.97806 0.96313 0.94789 1.20362 0.81107 1.02014 0.90624 1.25398 0.82913 0.68884 0.90627 1.90469 1.84864 1.47374 1.20807 1.84567 1.18039 1.85949 1.46402 0.94132 0.92578 0.92041 0.94220 0.94970 0.91591 0.89342 0.91925 0.89009 0.84798 0.83483 0.83746 0.85642 0.88965 0.90404 0.74486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.58 9.02 21.65 0.20 -53.39 16 2 C -0.05 -2.85 4.89 84.86 0.41 -2.43 16 3 Si 0.97 44.73 29.62 68.60 2.03 46.76 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 7 C -0.26 -13.73 9.70 84.03 0.81 -12.92 16 8 H 0.08 4.20 7.93 -2.91 -0.02 4.18 16 9 N -0.58 -28.48 2.09 -706.35 -1.48 -29.96 16 10 C 0.14 5.84 5.49 86.38 0.47 6.32 16 11 C -0.10 -4.05 4.17 30.59 0.13 -3.92 16 12 C -0.05 -1.53 2.92 -10.87 -0.03 -1.57 16 13 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 14 C -0.11 -3.09 6.60 31.51 0.21 -2.88 16 15 C -0.08 -2.03 6.76 30.52 0.21 -1.82 16 16 C -0.11 -3.18 6.14 -19.59 -0.12 -3.30 16 17 C -0.12 -2.83 10.04 22.30 0.22 -2.61 16 18 C -0.13 -2.68 10.05 22.24 0.22 -2.45 16 19 C -0.13 -2.82 10.05 22.24 0.22 -2.60 16 20 C -0.12 -3.16 8.64 22.30 0.19 -2.97 16 21 C -0.10 -2.81 5.09 -19.60 -0.10 -2.91 16 22 C 0.19 8.95 5.58 85.63 0.48 9.43 16 23 C 0.48 23.59 6.33 71.24 0.45 24.04 16 24 O -0.55 -30.16 14.42 21.95 0.32 -29.84 16 25 O -0.54 -22.40 13.42 -51.36 -0.69 -23.09 16 26 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 27 H 0.06 2.16 8.03 -2.39 -0.02 2.14 16 28 H 0.06 2.25 5.69 -2.39 -0.01 2.23 16 29 H 0.04 1.79 6.30 -2.39 -0.02 1.78 16 30 H 0.03 1.46 8.14 -2.39 -0.02 1.45 16 31 H 0.07 1.93 7.89 -2.39 -0.02 1.91 16 32 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.09 1.90 8.14 -2.39 -0.02 1.89 16 35 H 0.13 2.52 8.06 -2.91 -0.02 2.50 16 36 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 37 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 38 H 0.13 3.09 7.60 -2.91 -0.02 3.07 16 39 H 0.09 4.77 6.29 -2.39 -0.02 4.76 16 40 H 0.08 3.16 7.90 -2.39 -0.02 3.15 16 41 H 0.40 13.22 9.10 -74.06 -0.67 12.54 16 Total: -1.00 -67.89 332.24 4.52 -63.37 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: 0.36 Total: 28.75 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: 3.79 Total: -2.60 kcal Atomic # 7 Polarization: -82.06 SS G_CDS: -1.28 Total: -83.35 kcal Atomic # 8 Polarization: -52.55 SS G_CDS: -0.37 Total: -52.93 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -67.89 4.52 -63.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601073449.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.282 kcal (2) G-P(sol) polarization free energy of solvation -67.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds