Wall clock time and date at job start Tue Mar 31 2020 06:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47319 * 2 1 4 4 C 1.50705 * 109.46714 * 240.00409 * 2 1 3 5 5 H 1.08000 * 119.99669 * 240.00097 * 4 2 1 6 6 C 1.37875 * 120.00399 * 60.00000 * 4 2 1 7 7 N 1.31515 * 119.99672 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00108 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46898 * 90.00237 * 8 6 4 10 10 H 1.48499 * 109.47237 * 210.00040 * 8 6 4 11 11 H 1.48492 * 109.47345 * 330.00690 * 8 6 4 12 12 C 1.52998 * 109.47361 * 120.00360 * 2 1 3 13 13 N 1.46497 * 109.47246 * 300.00262 * 12 2 1 14 14 C 1.31946 * 120.00576 * 119.99291 * 13 12 2 15 15 C 1.46908 * 120.56336 * 180.02562 * 14 13 12 16 16 C 1.34833 * 118.33499 * 179.97438 * 15 14 13 17 17 N 1.36789 * 119.29756 * 359.97438 * 16 15 14 18 18 H 0.96996 * 119.44442 * 180.02562 * 17 16 15 19 19 C 1.36183 * 121.10979 * 0.02562 * 17 16 15 20 20 C 1.47987 * 119.08066 * 179.97438 * 19 17 16 21 21 N 1.34186 * 126.70059 * 0.03040 * 20 19 17 22 22 N 1.28984 * 107.25332 * 179.97438 * 21 20 19 23 23 N 1.28713 * 108.98925 * 359.97438 * 22 21 20 24 24 H 0.96997 * 125.32422 * 179.97438 * 23 22 21 25 25 N 1.28878 * 109.35980 * 359.97438 * 23 22 21 26 26 N 1.31203 * 121.83509 * 0.27116 * 19 17 16 27 27 H 1.09000 * 109.46469 * 299.99848 * 1 2 3 28 28 H 1.09006 * 109.46745 * 59.99452 * 1 2 3 29 29 H 1.08996 * 109.47386 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46912 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47013 * 300.00165 * 3 2 1 32 32 H 1.08999 * 109.46488 * 60.00055 * 3 2 1 33 33 H 0.96999 * 119.99525 * 179.97438 * 7 6 4 34 34 H 1.08993 * 109.47350 * 179.97438 * 12 2 1 35 35 H 1.09005 * 109.46899 * 59.99831 * 12 2 1 36 36 H 1.08006 * 120.83753 * 359.95560 * 15 14 13 37 37 H 1.08003 * 120.35398 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3224 -1.1194 -4.0081 9 1 1.3446 -2.1613 -4.4125 10 1 2.4872 -0.1401 -5.1121 11 1 3.6306 -1.7566 -3.7121 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0309 2.4454 14 6 0.7932 -0.6721 3.3139 15 6 0.2963 0.0085 4.5172 16 6 -0.4760 -0.6893 5.3743 17 7 -0.7699 -1.9964 5.0983 18 1 -1.3256 -2.5003 5.7132 19 6 -0.2954 -2.6021 3.9746 20 6 -0.6408 -4.0185 3.7206 21 7 -1.3970 -4.8110 4.4956 22 7 -1.4542 -5.9650 3.9222 23 7 -0.7717 -5.9250 2.8316 24 1 -0.6556 -6.6649 2.2153 25 7 -0.2668 -4.7482 2.6865 26 7 0.4641 -1.9666 3.1140 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9562 0.8900 33 1 0.7087 1.1614 -3.4844 34 1 3.1301 -0.7217 1.2489 35 1 1.6768 -1.7490 1.2491 36 1 0.5436 1.0419 4.7108 37 1 -0.8592 -0.2210 6.2689 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603136230.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:55 Heat of formation + Delta-G solvation = 198.496017 kcal Electronic energy + Delta-G solvation = -22554.427646 eV Core-core repulsion = 19178.235756 eV Total energy + Delta-G solvation = -3376.191890 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.80232 -40.46476 -36.55726 -34.85812 -34.45127 -34.05028 -32.11786 -31.38299 -29.82557 -25.93424 -25.52161 -25.25787 -24.95558 -24.58202 -22.60022 -21.56881 -19.61637 -18.60117 -18.39563 -17.49946 -17.28611 -16.25461 -15.72426 -14.89944 -14.62551 -14.52458 -14.25798 -13.85418 -13.16760 -13.02567 -12.63007 -12.33429 -12.01074 -11.76318 -11.55209 -11.46525 -11.41726 -11.04596 -10.92592 -10.59793 -10.50558 -10.05599 -9.99173 -9.88592 -9.77113 -9.25922 -9.09089 -8.71625 -8.23171 -8.12662 -7.05931 -5.78815 -3.88660 0.55771 0.91221 1.64701 1.81191 2.22373 2.65120 3.18788 3.37724 3.43917 3.47911 3.94498 4.11393 4.50823 4.58300 4.72169 4.96505 5.14113 5.29046 5.45697 5.58804 5.90393 6.05187 6.29577 6.58805 6.75315 6.84013 6.96728 7.05376 7.20892 7.32681 7.39655 7.56018 7.68681 7.75571 7.90885 7.92668 8.15599 8.33915 8.46375 8.63089 8.75786 9.12859 9.74780 11.21493 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.016024 B = 0.004828 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.925960 B = 5798.324342 C = 7199.943555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.079 3.921 3 C -0.121 4.121 4 C -0.499 4.499 5 H 0.052 0.948 6 C 0.063 3.937 7 N -0.887 5.887 8 Si 0.888 3.112 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.052 3.948 13 N -0.481 5.481 14 C 0.300 3.700 15 C -0.178 4.178 16 C 0.094 3.906 17 N -0.635 5.635 18 H 0.419 0.581 19 C 0.471 3.529 20 C 0.209 3.791 21 N -0.262 5.262 22 N -0.045 5.045 23 N -0.220 5.220 24 H 0.481 0.519 25 N -0.223 5.223 26 N -0.493 5.493 27 H 0.005 0.995 28 H 0.078 0.922 29 H 0.017 0.983 30 H 0.017 0.983 31 H 0.074 0.926 32 H 0.018 0.982 33 H 0.256 0.744 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.152 0.848 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.407 -10.336 17.338 21.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.078 3.922 3 C -0.179 4.179 4 C -0.538 4.538 5 H 0.070 0.930 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.717 3.283 9 H -0.210 1.210 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.077 4.077 13 N -0.198 5.198 14 C 0.022 3.978 15 C -0.208 4.208 16 C -0.029 4.029 17 N -0.259 5.259 18 H 0.256 0.744 19 C 0.191 3.809 20 C -0.074 4.074 21 N -0.138 5.138 22 N -0.040 5.040 23 N -0.068 5.068 24 H 0.336 0.664 25 N -0.077 5.077 26 N -0.220 5.220 27 H 0.025 0.975 28 H 0.096 0.904 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.093 0.907 32 H 0.037 0.963 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.169 0.831 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.747 -9.950 16.168 19.835 hybrid contribution -0.128 -1.174 -0.661 1.353 sum -5.875 -11.124 15.506 19.967 Atomic orbital electron populations 1.21696 0.98310 0.98127 0.99661 1.18059 0.92238 0.92630 0.89292 1.21670 0.97652 0.98530 1.00004 1.21135 1.30720 1.11590 0.90394 0.92969 1.24888 0.95217 0.95008 0.98579 1.69860 1.37157 1.22905 1.22669 0.86657 0.79165 0.79384 0.83110 1.20977 1.21363 1.20061 1.22364 0.98117 0.97648 0.89579 1.73288 1.09453 1.33017 1.04023 1.21033 0.97021 0.85037 0.94664 1.22211 1.02287 1.01628 0.94698 1.21660 0.98357 0.82724 1.00174 1.41703 1.49918 1.11949 1.22301 0.74434 1.18090 0.91669 0.86502 0.84644 1.22658 0.99304 0.95053 0.90374 1.76068 1.17012 0.96620 1.24095 1.78866 1.12357 1.16439 0.96300 1.47952 1.30567 1.10843 1.17446 0.66361 1.75376 1.17972 0.92272 1.22046 1.69313 1.14682 1.11710 1.26262 0.97545 0.90374 0.96427 0.96343 0.90687 0.96330 0.93348 0.92039 0.92841 0.83076 0.81174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.26 8.09 37.16 0.30 -2.96 16 2 C 0.08 2.13 0.57 -155.65 -0.09 2.05 16 3 C -0.12 -3.26 8.09 37.16 0.30 -2.96 16 4 C -0.50 -14.47 8.01 -34.44 -0.28 -14.75 16 5 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.06 1.81 5.15 -17.82 -0.09 1.72 16 7 N -0.89 -25.96 9.35 55.43 0.52 -25.44 16 8 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 9 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.05 1.30 5.18 -4.04 -0.02 1.28 16 13 N -0.48 -10.79 9.09 -59.20 -0.54 -11.33 16 14 C 0.30 5.71 7.60 -155.95 -1.19 4.53 16 15 C -0.18 -2.43 10.29 -37.28 -0.38 -2.81 16 16 C 0.09 0.87 11.28 -16.55 -0.19 0.68 16 17 N -0.63 -6.30 5.32 -10.65 -0.06 -6.36 16 18 H 0.42 2.83 8.46 -40.82 -0.35 2.49 16 19 C 0.47 6.64 7.67 -155.06 -1.19 5.45 16 20 C 0.21 2.71 8.10 -156.25 -1.27 1.45 16 21 N -0.26 -2.90 12.18 32.09 0.39 -2.51 16 22 N -0.04 -0.44 13.46 60.35 0.81 0.38 16 23 N -0.22 -1.91 7.90 60.35 0.48 -1.43 16 24 H 0.48 1.89 8.96 -340.35 -3.05 -1.16 16 25 N -0.22 -2.91 12.37 32.11 0.40 -2.51 16 26 N -0.49 -9.08 8.73 -9.03 -0.08 -9.16 16 27 H 0.01 0.15 7.60 -51.93 -0.39 -0.25 16 28 H 0.08 2.27 6.07 -51.93 -0.32 1.96 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 2.16 6.07 -51.93 -0.32 1.85 16 32 H 0.02 0.46 7.60 -51.93 -0.39 0.07 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.05 1.36 6.70 -51.93 -0.35 1.01 16 36 H 0.15 1.84 8.06 -52.48 -0.42 1.41 16 37 H 0.17 0.73 8.06 -52.48 -0.42 0.31 16 LS Contribution 317.37 15.07 4.78 4.78 Total: -1.00 -36.44 317.37 -9.22 -45.66 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -6.82 Total: -2.79 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -4.09 Total: -6.32 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: 1.92 Total: -58.37 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -36.44 -9.22 -45.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603136230.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 244.159 kcal (2) G-P(sol) polarization free energy of solvation -36.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 207.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 198.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds