Wall clock time and date at job start Tue Mar 31 2020 06:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47319 * 2 1 4 4 C 1.50705 * 109.46714 * 240.00409 * 2 1 3 5 5 H 1.08000 * 119.99669 * 240.00097 * 4 2 1 6 6 C 1.37875 * 120.00399 * 60.00000 * 4 2 1 7 7 N 1.31515 * 119.99672 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00108 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46898 * 90.00237 * 8 6 4 10 10 H 1.48499 * 109.47237 * 210.00040 * 8 6 4 11 11 H 1.48492 * 109.47345 * 330.00690 * 8 6 4 12 12 C 1.52998 * 109.47361 * 120.00360 * 2 1 3 13 13 N 1.46497 * 109.47246 * 300.00262 * 12 2 1 14 14 C 1.31946 * 120.00576 * 119.99291 * 13 12 2 15 15 C 1.46908 * 120.56336 * 180.02562 * 14 13 12 16 16 C 1.34833 * 118.33499 * 179.97438 * 15 14 13 17 17 N 1.36789 * 119.29756 * 359.97438 * 16 15 14 18 18 H 0.96996 * 119.44442 * 180.02562 * 17 16 15 19 19 C 1.36183 * 121.10979 * 0.02562 * 17 16 15 20 20 C 1.47987 * 119.08066 * 179.97438 * 19 17 16 21 21 N 1.34186 * 126.70059 * 0.03040 * 20 19 17 22 22 N 1.28984 * 107.25332 * 179.97438 * 21 20 19 23 23 N 1.28713 * 108.98925 * 359.97438 * 22 21 20 24 24 H 0.96997 * 125.32422 * 179.97438 * 23 22 21 25 25 N 1.28878 * 109.35980 * 359.97438 * 23 22 21 26 26 N 1.31203 * 121.83509 * 0.27116 * 19 17 16 27 27 H 1.09000 * 109.46469 * 299.99848 * 1 2 3 28 28 H 1.09006 * 109.46745 * 59.99452 * 1 2 3 29 29 H 1.08996 * 109.47386 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46912 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47013 * 300.00165 * 3 2 1 32 32 H 1.08999 * 109.46488 * 60.00055 * 3 2 1 33 33 H 0.96999 * 119.99525 * 179.97438 * 7 6 4 34 34 H 1.08993 * 109.47350 * 179.97438 * 12 2 1 35 35 H 1.09005 * 109.46899 * 59.99831 * 12 2 1 36 36 H 1.08006 * 120.83753 * 359.95560 * 15 14 13 37 37 H 1.08003 * 120.35398 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3224 -1.1194 -4.0081 9 1 1.3446 -2.1613 -4.4125 10 1 2.4872 -0.1401 -5.1121 11 1 3.6306 -1.7566 -3.7121 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0309 2.4454 14 6 0.7932 -0.6721 3.3139 15 6 0.2963 0.0085 4.5172 16 6 -0.4760 -0.6893 5.3743 17 7 -0.7699 -1.9964 5.0983 18 1 -1.3256 -2.5003 5.7132 19 6 -0.2954 -2.6021 3.9746 20 6 -0.6408 -4.0185 3.7206 21 7 -1.3970 -4.8110 4.4956 22 7 -1.4542 -5.9650 3.9222 23 7 -0.7717 -5.9250 2.8316 24 1 -0.6556 -6.6649 2.2153 25 7 -0.2668 -4.7482 2.6865 26 7 0.4641 -1.9666 3.1140 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9562 0.8900 33 1 0.7087 1.1614 -3.4844 34 1 3.1301 -0.7217 1.2489 35 1 1.6768 -1.7490 1.2491 36 1 0.5436 1.0419 4.7108 37 1 -0.8592 -0.2210 6.2689 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603136230.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:54 Heat of formation + Delta-G solvation = 170.847743 kcal Electronic energy + Delta-G solvation = -22555.626565 eV Core-core repulsion = 19178.235756 eV Total energy + Delta-G solvation = -3377.390809 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.70694 -41.60945 -38.34398 -36.24576 -35.53498 -35.06084 -33.70499 -32.80814 -31.35199 -27.56917 -27.32961 -26.96307 -26.76982 -25.63446 -23.66512 -22.88352 -20.71440 -20.16473 -19.54635 -18.44011 -18.40221 -17.91870 -17.44039 -16.71118 -15.99613 -15.91657 -15.24962 -15.07532 -15.06134 -14.26011 -14.21379 -13.83765 -13.54929 -13.40888 -13.11596 -12.80776 -12.63783 -12.54700 -12.46265 -12.39200 -12.35631 -12.14980 -12.10437 -11.38987 -11.26818 -11.03418 -10.79142 -10.71081 -10.37158 -9.86099 -8.41683 -7.95529 -6.14742 -0.51715 0.01573 0.62942 0.98543 1.14862 1.40340 1.41377 1.52150 1.76498 2.17644 2.45817 2.86999 3.00905 3.23475 3.52866 3.69650 3.93261 4.22445 4.31291 4.44594 4.68079 4.76041 4.84867 4.94119 5.13939 5.15021 5.21326 5.27331 5.42858 5.43953 5.50484 5.59263 5.66696 5.69988 6.15824 6.21853 6.27856 6.50070 6.83773 6.90259 7.01558 7.29038 7.51924 9.02154 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.016024 B = 0.004828 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.925960 B = 5798.324342 C = 7199.943555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.068 3.932 3 C -0.102 4.102 4 C -0.524 4.524 5 H 0.041 0.959 6 C 0.019 3.981 7 N -0.907 5.907 8 Si 0.953 3.047 9 H -0.276 1.276 10 H -0.280 1.280 11 H -0.272 1.272 12 C 0.078 3.922 13 N -0.553 5.553 14 C 0.317 3.683 15 C -0.225 4.225 16 C 0.150 3.850 17 N -0.607 5.607 18 H 0.441 0.559 19 C 0.485 3.515 20 C 0.193 3.807 21 N -0.254 5.254 22 N -0.034 5.034 23 N -0.193 5.193 24 H 0.499 0.501 25 N -0.254 5.254 26 N -0.556 5.556 27 H 0.010 0.990 28 H 0.055 0.945 29 H 0.003 0.997 30 H 0.010 0.990 31 H 0.053 0.947 32 H 0.024 0.976 33 H 0.259 0.741 34 H 0.035 0.965 35 H 0.033 0.967 36 H 0.164 0.836 37 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.214 -11.694 19.889 24.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.067 3.933 3 C -0.160 4.160 4 C -0.563 4.563 5 H 0.060 0.940 6 C -0.179 4.179 7 N -0.547 5.547 8 Si 0.778 3.222 9 H -0.202 1.202 10 H -0.206 1.206 11 H -0.197 1.197 12 C -0.052 4.052 13 N -0.274 5.274 14 C 0.042 3.958 15 C -0.255 4.255 16 C 0.025 3.975 17 N -0.230 5.230 18 H 0.282 0.718 19 C 0.206 3.794 20 C -0.090 4.090 21 N -0.130 5.130 22 N -0.029 5.029 23 N -0.045 5.045 24 H 0.359 0.641 25 N -0.108 5.108 26 N -0.284 5.284 27 H 0.029 0.971 28 H 0.074 0.926 29 H 0.023 0.977 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.182 0.818 37 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -7.610 -11.383 18.778 23.240 hybrid contribution 0.181 -1.013 -1.128 1.527 sum -7.429 -12.396 17.650 22.811 Atomic orbital electron populations 1.21393 0.98515 0.96748 0.98517 1.18100 0.92038 0.92725 0.90428 1.21448 0.96949 0.98582 0.99047 1.21385 1.31273 1.11774 0.91881 0.94024 1.25623 0.95266 0.95698 1.01317 1.69990 1.37553 1.23744 1.23363 0.85648 0.78704 0.78424 0.79378 1.20228 1.20550 1.19726 1.21758 0.96472 0.96335 0.90649 1.73284 1.15708 1.33289 1.05108 1.21794 0.93867 0.85400 0.94766 1.22310 1.05759 1.03012 0.94428 1.22669 0.93750 0.81095 0.99966 1.41989 1.47707 1.12506 1.20812 0.71778 1.18296 0.89652 0.86847 0.84563 1.22577 1.00412 0.94943 0.91035 1.76066 1.16538 0.96538 1.23820 1.78821 1.11954 1.15837 0.96316 1.47961 1.29018 1.10300 1.17218 0.64127 1.75337 1.18930 0.93688 1.22843 1.69264 1.17970 1.12250 1.28958 0.97070 0.92615 0.97743 0.97034 0.92831 0.95649 0.93202 0.94634 0.94814 0.81833 0.74242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -5.33 8.09 71.98 0.58 -4.74 16 2 C 0.07 3.88 0.57 -52.92 -0.03 3.85 16 3 C -0.10 -5.80 8.09 71.98 0.58 -5.22 16 4 C -0.52 -31.74 8.01 25.60 0.21 -31.54 16 5 H 0.04 2.53 7.74 -2.91 -0.02 2.51 16 6 C 0.02 1.14 5.15 84.65 0.44 1.57 16 7 N -0.91 -54.55 9.35 21.45 0.20 -54.35 16 8 Si 0.95 46.15 29.54 68.60 2.03 48.17 16 9 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 12 C 0.08 4.15 5.18 86.38 0.45 4.60 16 13 N -0.55 -26.08 9.09 -341.20 -3.10 -29.18 16 14 C 0.32 12.22 7.60 136.55 1.04 13.26 16 15 C -0.23 -5.63 10.29 23.76 0.24 -5.38 16 16 C 0.15 1.98 11.28 83.14 0.94 2.92 16 17 N -0.61 -9.39 5.32 -187.60 -1.00 -10.39 16 18 H 0.44 3.51 8.46 -92.71 -0.78 2.73 16 19 C 0.49 12.80 7.67 136.73 1.05 13.85 16 20 C 0.19 4.67 8.10 137.15 1.11 5.78 16 21 N -0.25 -4.91 12.18 -52.38 -0.64 -5.55 16 22 N -0.03 -0.59 13.46 37.02 0.50 -0.09 16 23 N -0.19 -2.99 7.90 37.02 0.29 -2.70 16 24 H 0.50 3.01 8.96 -347.52 -3.12 -0.11 16 25 N -0.25 -6.40 12.37 -52.33 -0.65 -7.04 16 26 N -0.56 -20.61 8.73 -182.49 -1.59 -22.21 16 27 H 0.01 0.57 7.60 -2.39 -0.02 0.55 16 28 H 0.06 3.36 6.07 -2.38 -0.01 3.35 16 29 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 3.21 6.07 -2.39 -0.01 3.20 16 32 H 0.02 1.34 7.60 -2.39 -0.02 1.32 16 33 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 34 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.03 1.84 6.70 -2.38 -0.02 1.82 16 36 H 0.16 3.66 8.06 -2.91 -0.02 3.63 16 37 H 0.24 0.02 8.06 -2.91 -0.02 0.00 16 Total: -1.00 -85.61 317.37 -0.12 -85.72 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: -2.76 Total: -1.34 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 6.60 Total: -1.05 kcal Atomic # 7 Polarization: -125.52 SS G_CDS: -5.99 Total: -131.50 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.17 kcal Total: -85.61 -0.12 -85.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603136230.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 256.569 kcal (2) G-P(sol) polarization free energy of solvation -85.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds