Wall clock time and date at job start Tue Mar 31 2020 06:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99778 * 2 1 4 4 H 1.48493 * 109.47369 * 269.99983 * 3 2 1 5 5 H 1.48506 * 109.47125 * 30.00046 * 3 2 1 6 6 H 1.48501 * 109.47394 * 149.99603 * 3 2 1 7 7 C 1.37882 * 120.00413 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99831 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99757 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47218 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47314 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46955 * 179.97438 * 11 10 9 13 13 C 1.47153 * 111.00012 * 190.00260 * 12 11 10 14 14 C 1.52886 * 108.49889 * 165.28961 * 13 12 11 15 15 C 1.50745 * 109.96620 * 50.48865 * 14 13 12 16 16 C 1.38394 * 118.35990 * 163.04585 * 15 14 13 17 17 C 1.39417 * 120.24202 * 179.57512 * 16 15 14 18 18 C 1.47725 * 120.25068 * 179.97438 * 17 16 15 19 19 O 1.21465 * 120.00030 * 359.97438 * 18 17 16 20 20 O 1.34710 * 119.99768 * 180.02562 * 18 17 16 21 21 C 1.39655 * 119.50266 * 359.97438 * 17 16 15 22 22 C 1.37705 * 119.70982 * 0.09381 * 21 17 16 23 23 C 1.38021 * 121.64130 * 342.81608 * 15 14 13 24 24 C 1.46615 * 110.99682 * 66.98657 * 12 11 10 25 25 H 0.96993 * 120.00350 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47317 * 60.00059 * 9 7 2 27 27 H 1.09001 * 109.47578 * 299.99764 * 9 7 2 28 28 H 1.09005 * 109.46789 * 59.99906 * 10 9 7 29 29 H 1.09003 * 109.47297 * 300.00404 * 10 9 7 30 30 H 1.09007 * 109.46695 * 60.00635 * 11 10 9 31 31 H 1.08991 * 109.47491 * 300.00107 * 11 10 9 32 32 H 1.09000 * 109.63402 * 45.58556 * 13 12 11 33 33 H 1.08999 * 109.80055 * 285.08471 * 13 12 11 34 34 H 1.09001 * 109.38810 * 290.34001 * 14 13 12 35 35 H 1.09001 * 109.39149 * 170.64654 * 14 13 12 36 36 H 1.08001 * 119.88076 * 359.60034 * 16 15 14 37 37 H 0.96704 * 116.99501 * 179.97438 * 20 18 17 38 38 H 1.07999 * 120.14443 * 180.37377 * 21 17 16 39 39 H 1.07996 * 119.69983 * 180.02562 * 22 21 17 40 40 H 1.09000 * 109.26429 * 55.78113 * 24 12 11 41 41 H 1.08999 * 109.26737 * 296.31084 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 7 2.4352 -6.1036 0.0006 13 6 1.7495 -7.3836 -0.2375 14 6 2.7988 -8.4374 -0.5921 15 6 3.9061 -8.4258 0.4307 16 6 4.7528 -9.5186 0.4954 17 6 5.7954 -9.5453 1.4205 18 6 6.6989 -10.7120 1.4902 19 8 6.5346 -11.6530 0.7399 20 8 7.7044 -10.7326 2.3864 21 6 5.9793 -8.4608 2.2810 22 6 5.1294 -7.3798 2.2079 23 6 4.0899 -7.3589 1.2868 24 6 3.1842 -6.1550 1.2599 25 1 -0.4850 0.8400 0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6242 -2.5568 0.8903 28 1 2.8721 -3.6042 0.8906 29 1 2.8722 -3.6043 -0.8894 30 1 0.8536 -5.0451 -0.8887 31 1 0.8542 -5.0446 0.8913 32 1 1.0464 -7.2745 -1.0633 33 1 1.2139 -7.6883 0.6616 34 1 3.2131 -8.2187 -1.5763 35 1 2.3317 -9.4221 -0.6086 36 1 4.6055 -10.3537 -0.1735 37 1 8.2691 -11.5177 2.3946 38 1 6.7873 -8.4680 2.9976 39 1 5.2720 -6.5411 2.8731 40 1 2.4837 -6.2132 2.0929 41 1 3.7849 -5.2508 1.3583 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608179849.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:27 Heat of formation + Delta-G solvation = -80.191128 kcal Electronic energy + Delta-G solvation = -21892.780197 eV Core-core repulsion = 18543.458366 eV Total energy + Delta-G solvation = -3349.321830 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.82127 -39.80975 -37.40710 -36.38131 -34.27024 -33.00772 -32.24134 -30.89052 -29.34337 -27.20333 -25.41526 -23.76693 -23.22272 -22.44061 -21.49756 -19.98499 -19.72825 -18.20236 -17.47531 -16.40291 -16.19202 -15.90842 -15.70161 -15.12298 -14.77343 -14.51881 -14.31488 -14.21775 -13.85551 -13.49161 -13.21329 -12.98550 -12.48322 -12.27054 -12.16181 -11.95685 -11.76523 -11.58513 -11.27597 -11.20659 -10.99528 -10.82615 -10.74090 -10.52108 -10.47804 -9.66753 -9.34793 -9.13351 -9.07098 -8.85599 -8.35032 -8.18569 -6.00260 -4.02318 0.44508 1.12320 2.26910 2.70466 3.32046 3.38242 3.41545 3.50037 3.96972 4.44325 4.46402 4.54827 4.64144 4.81146 4.91504 5.03288 5.19120 5.29186 5.33879 5.35825 5.42916 5.61361 5.66332 5.70838 5.72743 5.79949 5.91320 5.98472 6.00751 6.12354 6.17509 6.25245 6.31951 6.62240 6.65341 6.73779 7.06382 7.22607 7.30428 7.57651 7.67469 7.81830 7.99984 8.43238 9.04933 9.61810 11.11181 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028459 B = 0.002715 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.633392 B =10309.306564 C =11042.005456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.105 4.105 11 C 0.055 3.945 12 N -0.533 5.533 13 C 0.048 3.952 14 C -0.075 4.075 15 C -0.081 4.081 16 C -0.053 4.053 17 C -0.139 4.139 18 C 0.530 3.470 19 O -0.518 6.518 20 O -0.513 6.513 21 C -0.064 4.064 22 C -0.130 4.130 23 C -0.029 4.029 24 C 0.083 3.917 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.013 0.987 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.031 0.969 32 H 0.082 0.918 33 H 0.037 0.963 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.136 0.864 37 H 0.413 0.587 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.054 0.946 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.940 -21.197 4.444 23.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.143 4.143 11 C -0.072 4.072 12 N -0.257 5.257 13 C -0.080 4.080 14 C -0.112 4.112 15 C -0.081 4.081 16 C -0.071 4.071 17 C -0.140 4.140 18 C 0.375 3.625 19 O -0.408 6.408 20 O -0.324 6.324 21 C -0.082 4.082 22 C -0.149 4.149 23 C -0.029 4.029 24 C -0.045 4.045 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.032 0.968 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.101 0.899 33 H 0.055 0.945 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.154 0.846 37 H 0.272 0.728 38 H 0.155 0.845 39 H 0.152 0.848 40 H 0.072 0.928 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.816 -20.899 3.849 23.408 hybrid contribution 0.307 0.297 0.699 0.820 sum 10.123 -20.601 4.548 23.401 Atomic orbital electron populations 1.69958 1.06063 1.26578 1.51006 1.25027 0.94842 0.99263 0.95378 0.86603 0.79843 0.83487 0.78124 1.20656 1.21269 1.19875 1.21244 0.93047 0.91028 1.50367 0.92675 1.19072 0.94016 0.91391 0.97104 1.21660 0.99186 0.92646 1.00837 1.22372 0.93493 0.90710 1.00597 1.62382 1.27408 1.03259 1.32635 1.22161 0.95373 0.89662 1.00781 1.20573 0.93839 0.99050 0.97773 1.19571 0.97752 0.93090 0.97709 1.21183 0.92086 0.97929 0.95919 1.18891 0.98418 0.94274 1.02398 1.20946 0.78672 0.86290 0.76587 1.90880 1.71490 1.37059 1.41388 1.84567 1.42089 1.48802 1.56975 1.21314 0.98226 0.91850 0.96859 1.21108 0.95186 0.99045 0.99539 1.20095 0.94832 0.94573 0.93429 1.21148 0.95877 0.95945 0.91510 0.93030 0.96596 0.96817 0.93524 0.92472 0.90787 0.95037 0.89924 0.94500 0.89428 0.90333 0.84643 0.72842 0.84496 0.84825 0.92838 0.88092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 10 C -0.11 -2.11 5.09 -26.73 -0.14 -2.24 16 11 C 0.06 0.90 4.95 -3.82 -0.02 0.88 16 12 N -0.53 -7.54 4.68 -236.19 -1.10 -8.65 16 13 C 0.05 0.56 5.57 -3.74 -0.02 0.54 16 14 C -0.08 -0.77 5.94 -27.92 -0.17 -0.93 16 15 C -0.08 -0.92 5.77 -104.62 -0.60 -1.53 16 16 C -0.05 -0.58 9.20 -39.08 -0.36 -0.94 16 17 C -0.14 -1.50 5.87 -105.05 -0.62 -2.12 16 18 C 0.53 5.59 8.27 34.61 0.29 5.88 16 19 O -0.52 -6.79 17.13 -19.24 -0.33 -7.12 16 20 O -0.51 -3.78 12.69 -40.52 -0.51 -4.30 16 21 C -0.06 -0.63 9.62 -39.25 -0.38 -1.00 16 22 C -0.13 -1.34 9.62 -39.53 -0.38 -1.72 16 23 C -0.03 -0.34 5.81 -104.47 -0.61 -0.95 16 24 C 0.08 1.07 4.91 -5.14 -0.03 1.05 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.91 6.66 -51.93 -0.35 0.56 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.07 1.20 7.89 -51.92 -0.41 0.79 16 31 H 0.03 0.52 8.06 -51.93 -0.42 0.10 16 32 H 0.08 0.89 7.85 -51.93 -0.41 0.49 16 33 H 0.04 0.42 8.05 -51.93 -0.42 0.00 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.14 1.40 7.64 -52.49 -0.40 0.99 16 37 H 0.41 1.17 9.11 45.56 0.42 1.58 16 38 H 0.14 1.08 7.62 -52.49 -0.40 0.68 16 39 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 40 H 0.05 0.68 8.07 -51.93 -0.42 0.26 16 41 H 0.10 1.37 6.65 -51.93 -0.35 1.02 16 LS Contribution 341.22 15.07 5.14 5.14 Total: -1.00 -32.80 341.22 -9.89 -42.69 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -5.23 Total: -2.16 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -3.57 Total: -16.08 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: -0.37 Total: -34.75 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: -0.84 Total: -11.42 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.80 -9.89 -42.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608179849.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.497 kcal (2) G-P(sol) polarization free energy of solvation -32.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds