Wall clock time and date at job start Tue Mar 31 2020 06:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99778 * 2 1 4 4 H 1.48493 * 109.47369 * 269.99983 * 3 2 1 5 5 H 1.48506 * 109.47125 * 30.00046 * 3 2 1 6 6 H 1.48501 * 109.47394 * 149.99603 * 3 2 1 7 7 C 1.37882 * 120.00413 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99831 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99757 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47218 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47314 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46955 * 179.97438 * 11 10 9 13 13 C 1.47153 * 111.00012 * 190.00260 * 12 11 10 14 14 C 1.52886 * 108.49889 * 165.28961 * 13 12 11 15 15 C 1.50745 * 109.96620 * 50.48865 * 14 13 12 16 16 C 1.38394 * 118.35990 * 163.04585 * 15 14 13 17 17 C 1.39417 * 120.24202 * 179.57512 * 16 15 14 18 18 C 1.47725 * 120.25068 * 179.97438 * 17 16 15 19 19 O 1.21465 * 120.00030 * 359.97438 * 18 17 16 20 20 O 1.34710 * 119.99768 * 180.02562 * 18 17 16 21 21 C 1.39655 * 119.50266 * 359.97438 * 17 16 15 22 22 C 1.37705 * 119.70982 * 0.09381 * 21 17 16 23 23 C 1.38021 * 121.64130 * 342.81608 * 15 14 13 24 24 C 1.46615 * 110.99682 * 66.98657 * 12 11 10 25 25 H 0.96993 * 120.00350 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47317 * 60.00059 * 9 7 2 27 27 H 1.09001 * 109.47578 * 299.99764 * 9 7 2 28 28 H 1.09005 * 109.46789 * 59.99906 * 10 9 7 29 29 H 1.09003 * 109.47297 * 300.00404 * 10 9 7 30 30 H 1.09007 * 109.46695 * 60.00635 * 11 10 9 31 31 H 1.08991 * 109.47491 * 300.00107 * 11 10 9 32 32 H 1.09000 * 109.63402 * 45.58556 * 13 12 11 33 33 H 1.08999 * 109.80055 * 285.08471 * 13 12 11 34 34 H 1.09001 * 109.38810 * 290.34001 * 14 13 12 35 35 H 1.09001 * 109.39149 * 170.64654 * 14 13 12 36 36 H 1.08001 * 119.88076 * 359.60034 * 16 15 14 37 37 H 0.96704 * 116.99501 * 179.97438 * 20 18 17 38 38 H 1.07999 * 120.14443 * 180.37377 * 21 17 16 39 39 H 1.07996 * 119.69983 * 180.02562 * 22 21 17 40 40 H 1.09000 * 109.26429 * 55.78113 * 24 12 11 41 41 H 1.08999 * 109.26737 * 296.31084 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 7 2.4352 -6.1036 0.0006 13 6 1.7495 -7.3836 -0.2375 14 6 2.7988 -8.4374 -0.5921 15 6 3.9061 -8.4258 0.4307 16 6 4.7528 -9.5186 0.4954 17 6 5.7954 -9.5453 1.4205 18 6 6.6989 -10.7120 1.4902 19 8 6.5346 -11.6530 0.7399 20 8 7.7044 -10.7326 2.3864 21 6 5.9793 -8.4608 2.2810 22 6 5.1294 -7.3798 2.2079 23 6 4.0899 -7.3589 1.2868 24 6 3.1842 -6.1550 1.2599 25 1 -0.4850 0.8400 0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6242 -2.5568 0.8903 28 1 2.8721 -3.6042 0.8906 29 1 2.8722 -3.6043 -0.8894 30 1 0.8536 -5.0451 -0.8887 31 1 0.8542 -5.0446 0.8913 32 1 1.0464 -7.2745 -1.0633 33 1 1.2139 -7.6883 0.6616 34 1 3.2131 -8.2187 -1.5763 35 1 2.3317 -9.4221 -0.6086 36 1 4.6055 -10.3537 -0.1735 37 1 8.2691 -11.5177 2.3946 38 1 6.7873 -8.4680 2.9976 39 1 5.2720 -6.5411 2.8731 40 1 2.4837 -6.2132 2.0929 41 1 3.7849 -5.2508 1.3583 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608179849.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:27 Heat of formation + Delta-G solvation = -100.562098 kcal Electronic energy + Delta-G solvation = -21893.663548 eV Core-core repulsion = 18543.458366 eV Total energy + Delta-G solvation = -3350.205182 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.63189 -40.66874 -38.44364 -37.11852 -35.92248 -34.38489 -33.38045 -32.31455 -30.28453 -28.65896 -26.80079 -24.65325 -24.53993 -23.55412 -22.50810 -21.59705 -20.59850 -18.97565 -18.46992 -18.25119 -17.18381 -16.82619 -16.68862 -16.46958 -15.98775 -15.62836 -15.60207 -15.27549 -14.96206 -14.36046 -14.28733 -14.14599 -13.90395 -13.73065 -13.29416 -13.01611 -12.98679 -12.71752 -12.59668 -12.47741 -12.37137 -12.33364 -12.07176 -11.77303 -11.60616 -11.39681 -11.31538 -11.03225 -10.53310 -9.98050 -9.68388 -9.28535 -8.18711 -6.29200 -0.38155 0.33040 1.41324 1.42373 1.46047 1.53433 2.03423 2.42044 2.68494 2.89200 3.14667 3.60781 3.67922 3.86291 4.02715 4.07365 4.17475 4.26429 4.31010 4.41963 4.45025 4.56041 4.61585 4.73414 4.74989 4.83147 4.89017 4.97387 5.01041 5.10193 5.16539 5.21330 5.25592 5.34070 5.49757 5.53871 5.55660 5.77191 5.81802 5.88525 6.09239 6.10890 6.29645 6.88011 6.93947 7.39970 8.93116 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028459 B = 0.002715 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.633392 B =10309.306564 C =11042.005456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.963 3.037 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.541 4.541 8 H 0.059 0.941 9 C 0.026 3.974 10 C -0.090 4.090 11 C 0.068 3.932 12 N -0.541 5.541 13 C 0.047 3.953 14 C -0.071 4.071 15 C -0.090 4.090 16 C -0.059 4.059 17 C -0.149 4.149 18 C 0.536 3.464 19 O -0.550 6.550 20 O -0.503 6.503 21 C -0.058 4.058 22 C -0.131 4.131 23 C -0.044 4.044 24 C 0.084 3.916 25 H 0.263 0.737 26 H -0.008 1.008 27 H -0.008 1.008 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.030 0.970 32 H 0.089 0.911 33 H 0.041 0.959 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.139 0.861 37 H 0.434 0.566 38 H 0.158 0.842 39 H 0.150 0.850 40 H 0.055 0.945 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.551 -21.731 5.041 25.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.788 3.212 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.579 4.579 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.128 4.128 11 C -0.060 4.060 12 N -0.265 5.265 13 C -0.080 4.080 14 C -0.108 4.108 15 C -0.090 4.090 16 C -0.077 4.077 17 C -0.150 4.150 18 C 0.382 3.618 19 O -0.442 6.442 20 O -0.317 6.317 21 C -0.076 4.076 22 C -0.150 4.150 23 C -0.044 4.044 24 C -0.044 4.044 25 H 0.072 0.928 26 H 0.010 0.990 27 H 0.010 0.990 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.048 0.952 32 H 0.108 0.892 33 H 0.059 0.941 34 H 0.105 0.895 35 H 0.119 0.881 36 H 0.157 0.843 37 H 0.296 0.704 38 H 0.176 0.824 39 H 0.168 0.832 40 H 0.073 0.927 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 11.460 -21.458 4.461 24.732 hybrid contribution -0.156 0.413 0.555 0.710 sum 11.304 -21.045 5.017 24.409 Atomic orbital electron populations 1.70086 1.07754 1.27722 1.51842 1.25967 0.95761 1.03304 0.94823 0.85476 0.78728 0.78561 0.78468 1.19881 1.20757 1.18698 1.21697 0.93515 0.92433 1.50276 0.92309 1.18971 0.94411 0.93019 0.94795 1.21391 0.97966 0.92703 1.00693 1.22076 0.93315 0.90016 1.00579 1.62307 1.27044 1.03666 1.33509 1.22251 0.95893 0.88611 1.01271 1.20582 0.93274 0.99628 0.97333 1.19702 0.98210 0.93130 0.97939 1.21252 0.92275 0.97930 0.96235 1.19093 0.98525 0.94827 1.02570 1.20878 0.78882 0.85626 0.76375 1.90871 1.72465 1.38115 1.42773 1.84517 1.41461 1.50097 1.55580 1.21522 0.98374 0.91059 0.96692 1.21316 0.94615 0.99746 0.99289 1.20099 0.95454 0.94304 0.94586 1.21110 0.95907 0.96335 0.90998 0.92806 0.98991 0.98998 0.93019 0.93103 0.90818 0.95156 0.89221 0.94068 0.89542 0.88123 0.84312 0.70428 0.82401 0.83217 0.92677 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.74 13.29 21.45 0.28 -56.46 16 2 C 0.00 -0.06 5.46 84.66 0.46 0.41 16 3 Si 0.96 44.18 29.54 68.60 2.03 46.21 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.54 -30.79 9.11 25.60 0.23 -30.55 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.03 1.34 4.97 29.85 0.15 1.49 16 10 C -0.09 -3.62 5.09 30.59 0.16 -3.47 16 11 C 0.07 2.22 4.95 86.30 0.43 2.64 16 12 N -0.54 -14.95 4.68 -901.17 -4.21 -19.16 16 13 C 0.05 1.04 5.57 86.22 0.48 1.52 16 14 C -0.07 -1.35 5.94 29.82 0.18 -1.17 16 15 C -0.09 -1.93 5.77 -19.86 -0.11 -2.04 16 16 C -0.06 -1.22 9.20 22.59 0.21 -1.01 16 17 C -0.15 -2.98 5.87 -20.14 -0.12 -3.10 16 18 C 0.54 10.41 8.27 70.33 0.58 10.99 16 19 O -0.55 -13.82 17.13 19.95 0.34 -13.48 16 20 O -0.50 -6.16 12.69 -56.19 -0.71 -6.87 16 21 C -0.06 -1.01 9.62 22.49 0.22 -0.80 16 22 C -0.13 -2.47 9.62 22.30 0.21 -2.25 16 23 C -0.04 -0.98 5.81 -19.76 -0.11 -1.10 16 24 C 0.08 2.11 4.91 85.60 0.42 2.53 16 25 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 26 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 27 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 28 H 0.05 2.02 6.66 -2.38 -0.02 2.00 16 29 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.07 2.41 7.89 -2.38 -0.02 2.39 16 31 H 0.03 1.00 8.06 -2.39 -0.02 0.98 16 32 H 0.09 1.83 7.85 -2.39 -0.02 1.81 16 33 H 0.04 0.88 8.05 -2.39 -0.02 0.86 16 34 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.14 2.72 7.64 -2.91 -0.02 2.70 16 37 H 0.43 1.34 9.11 -74.05 -0.67 0.67 16 38 H 0.16 2.01 7.62 -2.91 -0.02 1.99 16 39 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 40 H 0.06 1.35 8.07 -2.39 -0.02 1.33 16 41 H 0.09 2.43 6.65 -2.39 -0.02 2.42 16 Total: -1.00 -70.31 341.22 1.46 -68.84 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: 0.36 Total: 6.82 kcal Atomic # 6 Polarization: -29.29 SS G_CDS: 3.38 Total: -25.91 kcal Atomic # 7 Polarization: -71.69 SS G_CDS: -3.93 Total: -75.61 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.37 Total: -20.35 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -70.31 1.46 -68.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608179849.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.720 kcal (2) G-P(sol) polarization free energy of solvation -70.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds