Wall clock time and date at job start Tue Mar 31 2020 06:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47101 * 2 1 4 4 C 1.50697 * 109.47100 * 240.00163 * 2 1 3 5 5 H 1.07999 * 120.00226 * 239.99910 * 4 2 1 6 6 C 1.37881 * 120.00278 * 59.99659 * 4 2 1 7 7 N 1.31519 * 119.99429 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00416 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47135 * 59.99499 * 8 6 4 10 10 H 1.48495 * 109.47500 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46826 * 299.99921 * 8 6 4 12 12 C 1.52997 * 109.47674 * 119.99907 * 2 1 3 13 13 N 1.46500 * 109.47150 * 300.00296 * 12 2 1 14 14 C 1.38929 * 120.00263 * 179.97438 * 13 12 2 15 15 C 1.39424 * 119.98934 * 359.97438 * 14 13 12 16 16 N 1.31791 * 120.01408 * 179.74026 * 15 14 13 17 17 C 1.33040 * 119.99455 * 0.55702 * 16 15 14 18 18 C 1.48397 * 120.00914 * 179.71876 * 17 16 15 19 19 N 1.34072 * 126.67711 * 179.68255 * 18 17 16 20 20 N 1.28991 * 107.26369 * 179.77171 * 19 18 17 21 21 N 1.28727 * 108.95062 * 0.43009 * 20 19 18 22 22 H 0.97001 * 125.33997 * 179.83160 * 21 20 19 23 23 N 1.28869 * 109.32440 * 359.55882 * 21 20 19 24 24 C 1.39250 * 119.98152 * 359.44238 * 17 16 15 25 25 N 1.32083 * 119.98645 * 0.27605 * 24 17 16 26 26 H 1.09004 * 109.46831 * 299.99664 * 1 2 3 27 27 H 1.08994 * 109.47249 * 59.99731 * 1 2 3 28 28 H 1.08999 * 109.46969 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47035 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.46702 * 300.00278 * 3 2 1 31 31 H 1.08995 * 109.47291 * 59.99919 * 3 2 1 32 32 H 0.97002 * 119.99692 * 179.97438 * 7 6 4 33 33 H 1.08996 * 109.47448 * 179.97438 * 12 2 1 34 34 H 1.08999 * 109.47009 * 59.99919 * 12 2 1 35 35 H 0.97010 * 120.00045 * 359.97438 * 13 12 2 36 36 H 1.07997 * 119.98917 * 0.02562 * 15 14 13 37 37 H 1.08002 * 120.00819 * 180.30105 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6033 8 14 2.3213 -1.1203 -4.0080 9 1 1.8259 -2.5202 -4.0077 10 1 1.8268 -0.4199 -5.2205 11 1 3.8062 -1.1207 -4.0083 12 6 2.0401 -0.7212 1.2492 13 7 1.5518 -0.0306 2.4454 14 6 1.8871 -0.5055 3.7072 15 6 2.6879 -1.6397 3.8349 16 7 3.0105 -2.0876 5.0316 17 6 2.5628 -1.4639 6.1182 18 6 2.9207 -1.9717 7.4659 19 7 2.5510 -1.4477 8.6433 20 7 3.0648 -2.1850 9.5686 21 7 3.7410 -3.1332 9.0204 22 1 4.2281 -3.8233 9.4973 23 7 3.6646 -3.0255 7.7385 24 6 1.7630 -0.3312 5.9905 25 7 1.4447 0.1204 4.7907 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 0.7094 1.1619 -3.4844 33 1 3.1301 -0.7216 1.2489 34 1 1.6768 -1.7489 1.2492 35 1 0.9943 0.7583 2.3564 36 1 3.0477 -2.1485 2.9529 37 1 1.4033 0.1783 6.8723 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609082965.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:05 Heat of formation + Delta-G solvation = 173.382112 kcal Electronic energy + Delta-G solvation = -21836.260020 eV Core-core repulsion = 18458.979109 eV Total energy + Delta-G solvation = -3377.280911 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.53814 -40.86639 -37.42550 -35.04127 -34.40522 -33.67348 -33.18941 -31.33959 -29.42238 -26.08051 -25.82459 -25.35109 -25.19347 -24.21264 -23.50242 -22.07030 -19.49426 -18.94631 -17.88881 -17.25147 -17.21507 -16.43773 -15.87833 -15.03432 -15.00741 -14.54589 -14.25655 -14.02387 -13.61083 -13.28931 -12.95581 -12.40977 -12.24065 -12.00918 -11.49969 -11.42280 -11.37740 -11.29911 -11.23255 -10.96143 -10.81116 -10.79324 -10.53518 -10.28126 -9.91843 -9.56480 -9.53549 -9.06838 -8.91058 -8.48101 -7.56497 -6.11722 -4.23522 0.65224 1.05957 1.26429 2.11412 2.27836 3.21101 3.23462 3.29066 3.32226 3.47037 3.93673 3.98244 4.31174 4.52566 4.70293 4.80806 5.15277 5.20478 5.28520 5.44921 5.64514 5.83983 6.00113 6.20526 6.28757 6.30949 6.57515 6.74178 6.81883 6.88770 6.92126 7.22535 7.44273 7.57475 7.59557 7.67442 7.89830 7.97731 8.04532 8.12484 8.26820 8.76362 9.43245 10.89613 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.040771 B = 0.002884 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.603049 B = 9706.594924 C =10202.131981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.060 3.940 3 C -0.134 4.134 4 C -0.512 4.512 5 H 0.058 0.942 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.124 3.876 13 N -0.682 5.682 14 C 0.380 3.620 15 C -0.003 4.003 16 N -0.369 5.369 17 C 0.037 3.963 18 C 0.249 3.751 19 N -0.270 5.270 20 N -0.054 5.054 21 N -0.232 5.232 22 H 0.474 0.526 23 N -0.274 5.274 24 C 0.166 3.834 25 N -0.514 5.514 26 H 0.008 0.992 27 H 0.087 0.913 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.087 0.913 31 H 0.008 0.992 32 H 0.262 0.738 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.410 0.590 36 H 0.174 0.826 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.340 -4.749 16.863 17.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.060 3.940 3 C -0.192 4.192 4 C -0.551 4.551 5 H 0.077 0.923 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.722 3.278 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.002 3.998 13 N -0.309 5.309 14 C 0.135 3.865 15 C -0.178 4.178 16 N -0.083 5.083 17 C -0.105 4.105 18 C -0.032 4.032 19 N -0.144 5.144 20 N -0.049 5.049 21 N -0.078 5.078 22 H 0.328 0.672 23 N -0.126 5.126 24 C 0.000 4.000 25 N -0.236 5.236 26 H 0.027 0.973 27 H 0.106 0.894 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.106 0.894 31 H 0.027 0.973 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.248 0.752 36 H 0.191 0.809 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 3.318 -4.704 17.127 18.068 hybrid contribution 0.458 -0.649 -1.062 1.326 sum 3.776 -5.352 16.065 17.349 Atomic orbital electron populations 1.21859 0.97534 0.99340 1.00415 1.18320 0.92977 0.92830 0.89905 1.21860 0.98651 0.98230 1.00420 1.20889 1.32074 1.12339 0.89767 0.92337 1.24879 0.94713 0.94858 0.98930 1.69792 1.36220 1.22536 1.23565 0.86612 0.79231 0.79775 0.82132 1.20221 1.21285 1.20228 1.22091 0.98296 0.96135 0.83293 1.45364 1.52464 1.31622 1.01405 1.19786 0.89257 0.89954 0.87466 1.23115 1.02036 0.96986 0.95624 1.67938 1.15690 1.27144 0.97554 1.18129 1.06244 0.98530 0.87572 1.22920 0.96080 0.90615 0.93599 1.76045 1.20313 1.21787 0.96283 1.78866 1.06135 0.97247 1.22646 1.47790 1.34284 1.22640 1.03133 0.67175 1.75164 1.20863 1.20650 0.95959 1.23308 0.90334 0.91066 0.95280 1.68171 1.25897 1.32048 0.97518 0.97283 0.89436 0.95303 0.95301 0.89435 0.97277 0.92775 0.92046 0.92050 0.75184 0.80893 0.80784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 8.08 37.16 0.30 -2.56 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -2.86 8.08 37.16 0.30 -2.56 16 4 C -0.51 -12.38 8.01 -34.44 -0.28 -12.66 16 5 H 0.06 1.39 7.74 -52.49 -0.41 0.98 16 6 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.88 -22.65 9.35 55.43 0.52 -22.13 16 8 Si 0.89 19.73 29.54 -169.99 -5.02 14.71 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 C 0.12 2.20 3.73 -4.04 -0.02 2.19 16 13 N -0.68 -11.08 5.13 -60.29 -0.31 -11.39 16 14 C 0.38 5.97 7.66 -154.71 -1.19 4.78 16 15 C 0.00 -0.05 10.48 -17.13 -0.18 -0.23 16 16 N -0.37 -5.74 10.43 -9.41 -0.10 -5.83 16 17 C 0.04 0.54 6.75 -82.78 -0.56 -0.02 16 18 C 0.25 3.39 8.04 -156.29 -1.26 2.13 16 19 N -0.27 -3.46 12.22 32.15 0.39 -3.06 16 20 N -0.05 -0.58 13.47 60.35 0.81 0.24 16 21 N -0.23 -1.99 7.90 60.35 0.48 -1.52 16 22 H 0.47 1.63 8.96 -340.36 -3.05 -1.42 16 23 N -0.27 -3.37 12.39 32.16 0.40 -2.97 16 24 C 0.17 2.28 10.87 -17.07 -0.19 2.09 16 25 N -0.51 -7.92 10.52 -11.98 -0.13 -8.04 16 26 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 27 H 0.09 2.10 6.07 -51.93 -0.32 1.79 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 2.10 6.07 -51.92 -0.32 1.79 16 31 H 0.01 0.16 6.86 -51.93 -0.36 -0.19 16 32 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 33 H 0.06 1.06 7.94 -51.93 -0.41 0.65 16 34 H 0.06 1.06 7.93 -51.93 -0.41 0.65 16 35 H 0.41 6.78 6.29 -40.82 -0.26 6.52 16 36 H 0.17 2.36 6.71 -52.49 -0.35 2.01 16 37 H 0.18 1.95 7.87 -52.49 -0.41 1.54 16 LS Contribution 313.53 15.07 4.72 4.72 Total: -1.00 -27.91 313.53 -8.08 -35.99 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -6.63 Total: 3.31 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -3.23 Total: -4.03 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: 2.07 Total: -54.71 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.91 -8.08 -35.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609082965.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.374 kcal (2) G-P(sol) polarization free energy of solvation -27.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 181.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 173.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds