Wall clock time and date at job start Tue Mar 31 2020 06:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47101 * 2 1 4 4 C 1.50697 * 109.47100 * 240.00163 * 2 1 3 5 5 H 1.07999 * 120.00226 * 239.99910 * 4 2 1 6 6 C 1.37881 * 120.00278 * 59.99659 * 4 2 1 7 7 N 1.31519 * 119.99429 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00416 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47135 * 59.99499 * 8 6 4 10 10 H 1.48495 * 109.47500 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46826 * 299.99921 * 8 6 4 12 12 C 1.52997 * 109.47674 * 119.99907 * 2 1 3 13 13 N 1.46500 * 109.47150 * 300.00296 * 12 2 1 14 14 C 1.38929 * 120.00263 * 179.97438 * 13 12 2 15 15 C 1.39424 * 119.98934 * 359.97438 * 14 13 12 16 16 N 1.31791 * 120.01408 * 179.74026 * 15 14 13 17 17 C 1.33040 * 119.99455 * 0.55702 * 16 15 14 18 18 C 1.48397 * 120.00914 * 179.71876 * 17 16 15 19 19 N 1.34072 * 126.67711 * 179.68255 * 18 17 16 20 20 N 1.28991 * 107.26369 * 179.77171 * 19 18 17 21 21 N 1.28727 * 108.95062 * 0.43009 * 20 19 18 22 22 H 0.97001 * 125.33997 * 179.83160 * 21 20 19 23 23 N 1.28869 * 109.32440 * 359.55882 * 21 20 19 24 24 C 1.39250 * 119.98152 * 359.44238 * 17 16 15 25 25 N 1.32083 * 119.98645 * 0.27605 * 24 17 16 26 26 H 1.09004 * 109.46831 * 299.99664 * 1 2 3 27 27 H 1.08994 * 109.47249 * 59.99731 * 1 2 3 28 28 H 1.08999 * 109.46969 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47035 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.46702 * 300.00278 * 3 2 1 31 31 H 1.08995 * 109.47291 * 59.99919 * 3 2 1 32 32 H 0.97002 * 119.99692 * 179.97438 * 7 6 4 33 33 H 1.08996 * 109.47448 * 179.97438 * 12 2 1 34 34 H 1.08999 * 109.47009 * 59.99919 * 12 2 1 35 35 H 0.97010 * 120.00045 * 359.97438 * 13 12 2 36 36 H 1.07997 * 119.98917 * 0.02562 * 15 14 13 37 37 H 1.08002 * 120.00819 * 180.30105 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6033 8 14 2.3213 -1.1203 -4.0080 9 1 1.8259 -2.5202 -4.0077 10 1 1.8268 -0.4199 -5.2205 11 1 3.8062 -1.1207 -4.0083 12 6 2.0401 -0.7212 1.2492 13 7 1.5518 -0.0306 2.4454 14 6 1.8871 -0.5055 3.7072 15 6 2.6879 -1.6397 3.8349 16 7 3.0105 -2.0876 5.0316 17 6 2.5628 -1.4639 6.1182 18 6 2.9207 -1.9717 7.4659 19 7 2.5510 -1.4477 8.6433 20 7 3.0648 -2.1850 9.5686 21 7 3.7410 -3.1332 9.0204 22 1 4.2281 -3.8233 9.4973 23 7 3.6646 -3.0255 7.7385 24 6 1.7630 -0.3312 5.9905 25 7 1.4447 0.1204 4.7907 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 0.7094 1.1619 -3.4844 33 1 3.1301 -0.7216 1.2489 34 1 1.6768 -1.7489 1.2492 35 1 0.9943 0.7583 2.3564 36 1 3.0477 -2.1485 2.9529 37 1 1.4033 0.1783 6.8723 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609082965.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:04 Heat of formation + Delta-G solvation = 154.540254 kcal Electronic energy + Delta-G solvation = -21837.077064 eV Core-core repulsion = 18458.979109 eV Total energy + Delta-G solvation = -3378.097955 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.43664 -42.02022 -38.89785 -36.36123 -35.34914 -34.98082 -34.20177 -32.98942 -30.62803 -27.57715 -27.55256 -26.93289 -26.29431 -25.27375 -24.65706 -23.15777 -20.71201 -20.23165 -19.17004 -18.38016 -18.14197 -17.66791 -17.48933 -16.68316 -16.23493 -15.74393 -15.59361 -15.04186 -14.99015 -14.68853 -14.46718 -13.87875 -13.42717 -13.27815 -13.07219 -12.93976 -12.59481 -12.58697 -12.57477 -12.35183 -12.24296 -12.16607 -12.10013 -11.83533 -11.49979 -11.20410 -10.88073 -10.69834 -10.34738 -10.19551 -8.76298 -7.99117 -6.15280 -0.41964 0.09984 0.19303 1.23125 1.41726 1.47955 1.50120 1.55069 2.02129 2.43655 2.50689 2.80178 2.99913 3.25818 3.43513 3.54414 3.74107 4.16540 4.21163 4.35408 4.50594 4.53463 4.58548 4.73247 4.93266 5.07755 5.09750 5.19603 5.21555 5.45591 5.64538 5.67976 5.70713 5.72522 6.14733 6.22051 6.40769 6.42226 6.47213 6.87688 6.93447 7.14421 7.53365 8.99754 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.040771 B = 0.002884 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.603049 B = 9706.594924 C =10202.131981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.054 3.946 3 C -0.125 4.125 4 C -0.524 4.524 5 H 0.059 0.941 6 C 0.025 3.975 7 N -0.903 5.903 8 Si 0.944 3.056 9 H -0.275 1.275 10 H -0.291 1.291 11 H -0.275 1.275 12 C 0.140 3.860 13 N -0.684 5.684 14 C 0.372 3.628 15 C -0.006 4.006 16 N -0.383 5.383 17 C 0.038 3.962 18 C 0.233 3.767 19 N -0.282 5.282 20 N -0.051 5.051 21 N -0.201 5.201 22 H 0.495 0.505 23 N -0.284 5.284 24 C 0.168 3.832 25 N -0.523 5.523 26 H 0.028 0.972 27 H 0.058 0.942 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.058 0.942 31 H 0.028 0.972 32 H 0.258 0.742 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.408 0.592 36 H 0.185 0.815 37 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.977 -5.654 18.598 19.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.053 3.947 3 C -0.183 4.183 4 C -0.562 4.562 5 H 0.077 0.923 6 C -0.174 4.174 7 N -0.542 5.542 8 Si 0.771 3.229 9 H -0.200 1.200 10 H -0.217 1.217 11 H -0.200 1.200 12 C 0.017 3.983 13 N -0.312 5.312 14 C 0.129 3.871 15 C -0.179 4.179 16 N -0.097 5.097 17 C -0.104 4.104 18 C -0.048 4.048 19 N -0.156 5.156 20 N -0.046 5.046 21 N -0.052 5.052 22 H 0.354 0.646 23 N -0.137 5.137 24 C 0.003 3.997 25 N -0.245 5.245 26 H 0.047 0.953 27 H 0.077 0.923 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.246 0.754 36 H 0.201 0.799 37 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 3.971 -5.632 18.900 20.118 hybrid contribution 0.304 -0.430 -1.415 1.510 sum 4.276 -6.062 17.485 18.994 Atomic orbital electron populations 1.21709 0.97728 0.98874 0.99935 1.18305 0.92808 0.92807 0.90735 1.21711 0.98249 0.98357 0.99939 1.21280 1.31603 1.12350 0.90982 0.92275 1.25490 0.95199 0.95529 1.01210 1.69933 1.37209 1.23530 1.23535 0.85825 0.78702 0.78821 0.79502 1.19992 1.21721 1.20007 1.21736 0.98385 0.95814 0.82369 1.45094 1.53147 1.31736 1.01253 1.19793 0.89719 0.90317 0.87263 1.23266 1.01838 0.96835 0.95961 1.67961 1.16224 1.27645 0.97914 1.18369 1.05672 0.98461 0.87881 1.22816 0.97123 0.91379 0.93488 1.76039 1.20963 1.22456 0.96152 1.78816 1.06150 0.97428 1.22161 1.47821 1.32945 1.22268 1.02197 0.64609 1.75107 1.20787 1.20434 0.97410 1.23645 0.89813 0.90857 0.95386 1.68168 1.26092 1.32344 0.97945 0.95294 0.92295 0.95667 0.95669 0.92296 0.95287 0.93260 0.91588 0.91587 0.75406 0.79862 0.78481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.29 8.08 71.98 0.58 -4.71 16 2 C 0.05 2.27 0.50 -52.93 -0.03 2.24 16 3 C -0.12 -5.30 8.08 71.98 0.58 -4.72 16 4 C -0.52 -25.16 8.01 25.60 0.21 -24.95 16 5 H 0.06 2.77 7.74 -2.91 -0.02 2.74 16 6 C 0.03 1.27 5.15 84.65 0.44 1.70 16 7 N -0.90 -47.02 9.35 21.45 0.20 -46.82 16 8 Si 0.94 40.49 29.54 68.60 2.03 42.52 16 9 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 10 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 12 C 0.14 4.78 3.73 86.38 0.32 5.10 16 13 N -0.68 -21.32 5.13 -344.65 -1.77 -23.08 16 14 C 0.37 11.17 7.66 133.06 1.02 12.19 16 15 C -0.01 -0.17 10.48 84.98 0.89 0.72 16 16 N -0.38 -11.36 10.43 -183.68 -1.92 -13.27 16 17 C 0.04 1.06 6.75 41.91 0.28 1.34 16 18 C 0.23 5.92 8.04 137.34 1.10 7.02 16 19 N -0.28 -6.67 12.22 -52.20 -0.64 -7.31 16 20 N -0.05 -0.97 13.47 37.02 0.50 -0.47 16 21 N -0.20 -2.94 7.90 37.02 0.29 -2.65 16 22 H 0.49 2.00 8.96 -347.53 -3.12 -1.11 16 23 N -0.28 -6.39 12.39 -52.15 -0.65 -7.03 16 24 C 0.17 4.32 10.87 84.90 0.92 5.25 16 25 N -0.52 -15.31 10.52 -191.83 -2.02 -17.33 16 26 H 0.03 1.07 6.86 -2.38 -0.02 1.05 16 27 H 0.06 2.86 6.07 -2.39 -0.01 2.84 16 28 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.06 2.86 6.07 -2.38 -0.01 2.84 16 31 H 0.03 1.07 6.86 -2.39 -0.02 1.06 16 32 H 0.26 13.12 8.31 -92.71 -0.77 12.35 16 33 H 0.07 2.18 7.94 -2.39 -0.02 2.17 16 34 H 0.07 2.18 7.93 -2.39 -0.02 2.17 16 35 H 0.41 12.93 6.29 -92.70 -0.58 12.35 16 36 H 0.18 4.74 6.71 -2.91 -0.02 4.72 16 37 H 0.20 4.02 7.87 -2.91 -0.02 3.99 16 Total: -1.00 -58.48 313.53 -0.20 -58.68 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -2.55 Total: 15.59 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 6.32 Total: 1.19 kcal Atomic # 7 Polarization: -111.97 SS G_CDS: -5.99 Total: -117.97 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Total: -58.48 -0.20 -58.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609082965.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.218 kcal (2) G-P(sol) polarization free energy of solvation -58.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds