Wall clock time and date at job start Tue Mar 31 2020 06:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47250 * 2 1 4 4 C 1.50701 * 109.47297 * 240.00090 * 2 1 3 5 5 H 1.08001 * 119.99767 * 240.00053 * 4 2 1 6 6 C 1.37871 * 120.00101 * 60.00090 * 4 2 1 7 7 N 1.31514 * 120.00130 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99874 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47421 * 0.02562 * 8 6 4 10 10 H 1.48510 * 109.47000 * 119.99957 * 8 6 4 11 11 H 1.48498 * 109.47210 * 239.99803 * 8 6 4 12 12 C 1.53004 * 109.46976 * 119.99945 * 2 1 3 13 13 N 1.46499 * 109.47216 * 300.00012 * 12 2 1 14 14 C 1.38776 * 120.00159 * 179.97438 * 13 12 2 15 15 N 1.32584 * 120.15212 * 0.30170 * 14 13 12 16 16 C 1.32267 * 119.99424 * 180.27857 * 15 14 13 17 17 C 1.38296 * 120.31760 * 359.43954 * 16 15 14 18 18 N 1.32114 * 120.30986 * 0.25816 * 17 16 15 19 19 C 1.32755 * 119.99893 * 0.02562 * 18 17 16 20 20 C 1.48307 * 120.15831 * 180.02562 * 19 18 17 21 21 N 1.34093 * 126.68338 * 180.02562 * 20 19 18 22 22 N 1.28982 * 107.26295 * 179.97438 * 21 20 19 23 23 N 1.28727 * 108.95904 * 0.02562 * 22 21 20 24 24 H 0.97010 * 125.33191 * 179.97438 * 23 22 21 25 25 N 1.28864 * 109.33388 * 359.72269 * 23 22 21 26 26 H 1.08997 * 109.47317 * 300.00034 * 1 2 3 27 27 H 1.08998 * 109.46963 * 60.00266 * 1 2 3 28 28 H 1.09007 * 109.47153 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47149 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47125 * 300.00130 * 3 2 1 31 31 H 1.09005 * 109.46849 * 60.00009 * 3 2 1 32 32 H 0.96999 * 120.00218 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47127 * 179.97438 * 12 2 1 34 34 H 1.08999 * 109.47022 * 60.00487 * 12 2 1 35 35 H 0.97000 * 119.99794 * 359.97438 * 13 12 2 36 36 H 1.08002 * 119.84412 * 179.72463 * 16 15 14 37 37 H 1.07993 * 119.84139 * 180.28476 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1455 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8161 11 1 3.1467 -0.1874 -4.8164 12 6 2.0399 -0.7213 1.2493 13 7 1.5516 -0.0307 2.4454 14 6 1.8864 -0.5051 3.7059 15 7 2.6529 -1.5796 3.8311 16 6 2.9655 -2.0323 5.0339 17 6 2.5060 -1.3832 6.1653 18 7 1.7463 -0.3080 6.0549 19 6 1.4203 0.1539 4.8537 20 6 0.5682 1.3610 4.7256 21 7 0.1611 1.9368 3.5851 22 7 -0.5594 2.9569 3.9073 23 7 -0.6170 3.0397 5.1906 24 1 -1.0971 3.7203 5.6879 25 7 0.0587 2.0738 5.7112 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 0.7090 1.1614 -3.4844 33 1 3.1299 -0.7217 1.2491 34 1 1.6767 -1.7489 1.2492 35 1 0.9942 0.7582 2.3564 36 1 3.5864 -2.9104 5.1331 37 1 2.7697 -1.7568 7.1436 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609082971.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:08 Heat of formation + Delta-G solvation = 181.952966 kcal Electronic energy + Delta-G solvation = -22958.632052 eV Core-core repulsion = 19581.722801 eV Total energy + Delta-G solvation = -3376.909251 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.46464 -40.79356 -37.18385 -34.79598 -34.58840 -33.87124 -32.51299 -31.25496 -29.35364 -26.17254 -25.62331 -25.36660 -24.99183 -24.29637 -22.61047 -22.32598 -19.44768 -18.73090 -17.74904 -17.16823 -17.09733 -16.62161 -15.71743 -14.97111 -14.96017 -14.42630 -14.26942 -13.71415 -13.33451 -13.17463 -12.72341 -12.31525 -12.08873 -11.69926 -11.52836 -11.34833 -11.25391 -11.14444 -11.08333 -11.01343 -10.67760 -10.62231 -10.30331 -10.13665 -9.74680 -9.40721 -9.30039 -8.98827 -8.69513 -8.34284 -7.41512 -5.96581 -4.07232 0.60933 1.15323 1.49413 2.20427 2.29840 3.25520 3.29848 3.38379 3.42396 3.73333 3.98670 4.03702 4.41128 4.50547 4.77871 4.86231 5.29222 5.29723 5.32668 5.46536 5.62571 6.21827 6.29538 6.34151 6.36502 6.58635 6.84369 6.98057 7.04494 7.10653 7.31008 7.34362 7.53592 7.64328 7.74949 7.86233 8.07412 8.08188 8.20256 8.40714 8.49082 8.93263 9.58192 11.04684 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.019147 B = 0.004892 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.055141 B = 5722.775680 C = 6993.773019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 C -0.133 4.133 4 C -0.504 4.504 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.131 3.869 13 N -0.673 5.673 14 C 0.402 3.598 15 N -0.500 5.500 16 C 0.135 3.865 17 C -0.044 4.044 18 N -0.366 5.366 19 C 0.050 3.950 20 C 0.244 3.756 21 N -0.275 5.275 22 N -0.037 5.037 23 N -0.230 5.230 24 H 0.475 0.525 25 N -0.273 5.273 26 H 0.011 0.989 27 H 0.086 0.914 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.086 0.914 31 H 0.011 0.989 32 H 0.259 0.741 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.427 0.573 36 H 0.171 0.829 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.725 1.019 16.549 16.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.056 3.944 3 C -0.190 4.190 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.721 3.279 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.008 3.992 13 N -0.306 5.306 14 C 0.156 3.844 15 N -0.223 5.223 16 C -0.031 4.031 17 C -0.209 4.209 18 N -0.081 5.081 19 C -0.101 4.101 20 C -0.037 4.037 21 N -0.150 5.150 22 N -0.032 5.032 23 N -0.076 5.076 24 H 0.330 0.670 25 N -0.125 5.125 26 H 0.030 0.970 27 H 0.104 0.896 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.104 0.896 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.275 0.725 36 H 0.188 0.812 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.125 1.592 15.756 15.876 hybrid contribution 0.090 -0.135 -0.245 0.294 sum -1.035 1.456 15.511 15.613 Atomic orbital electron populations 1.21834 0.97677 0.99021 1.00498 1.18362 0.92941 0.92838 0.90291 1.21836 0.98307 0.98385 1.00499 1.20997 1.31440 1.12052 0.89815 0.92362 1.24883 0.94911 0.94927 0.98815 1.69832 1.36629 1.22704 1.23042 0.86531 0.78600 0.79720 0.83096 1.19778 1.21117 1.21112 1.21897 0.98289 0.95869 0.83110 1.46108 1.51194 1.31526 1.01756 1.19282 0.88890 0.89086 0.87156 1.68306 1.15494 1.12232 1.26294 1.23713 0.93870 0.97768 0.87723 1.23147 1.02019 0.95341 1.00382 1.67871 1.06861 1.09889 1.23495 1.17757 1.06182 0.96430 0.89769 1.22924 0.99192 0.96895 0.84693 1.75526 1.11391 1.03858 1.24230 1.78938 1.14060 1.13873 0.96306 1.47797 1.33869 1.21140 1.04816 0.67046 1.75099 1.11103 1.00620 1.25696 0.97010 0.89572 0.95635 0.95638 0.89560 0.97020 0.93088 0.92328 0.92342 0.72486 0.81196 0.81493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 8.08 37.16 0.30 -2.88 16 2 C 0.06 1.36 0.50 -155.66 -0.08 1.28 16 3 C -0.13 -3.18 8.08 37.16 0.30 -2.88 16 4 C -0.50 -13.30 8.01 -34.44 -0.28 -13.58 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.88 -24.01 9.35 55.43 0.52 -23.49 16 8 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 9 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.13 2.82 4.54 -4.04 -0.02 2.80 16 13 N -0.67 -13.26 5.04 -60.11 -0.30 -13.57 16 14 C 0.40 7.25 7.49 -154.63 -1.16 6.09 16 15 N -0.50 -8.26 9.73 -12.02 -0.12 -8.38 16 16 C 0.14 1.64 11.21 -17.34 -0.19 1.45 16 17 C -0.04 -0.52 11.20 -17.41 -0.20 -0.71 16 18 N -0.37 -5.56 10.44 -9.45 -0.10 -5.66 16 19 C 0.05 0.85 6.78 -82.54 -0.56 0.29 16 20 C 0.24 4.03 8.01 -156.28 -1.25 2.78 16 21 N -0.28 -4.71 9.47 32.14 0.30 -4.41 16 22 N -0.04 -0.52 13.47 60.35 0.81 0.29 16 23 N -0.23 -2.47 7.90 60.35 0.48 -1.99 16 24 H 0.48 2.47 8.96 -340.35 -3.05 -0.58 16 25 N -0.27 -3.81 12.39 32.15 0.40 -3.41 16 26 H 0.01 0.25 6.86 -51.93 -0.36 -0.11 16 27 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 28 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 31 H 0.01 0.25 6.86 -51.93 -0.36 -0.11 16 32 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.43 8.51 2.72 -40.82 -0.11 8.40 16 36 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.17 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 309.97 15.07 4.67 4.67 Total: -1.00 -31.24 309.97 -8.16 -39.41 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -6.58 Total: 4.46 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -3.22 Total: -3.71 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: 1.99 Total: -60.61 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.24 -8.16 -39.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609082971.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.361 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 190.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 181.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds