Wall clock time and date at job start Tue Mar 31 2020 06:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47250 * 2 1 4 4 C 1.50701 * 109.47297 * 240.00090 * 2 1 3 5 5 H 1.08001 * 119.99767 * 240.00053 * 4 2 1 6 6 C 1.37871 * 120.00101 * 60.00090 * 4 2 1 7 7 N 1.31514 * 120.00130 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99874 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47421 * 0.02562 * 8 6 4 10 10 H 1.48510 * 109.47000 * 119.99957 * 8 6 4 11 11 H 1.48498 * 109.47210 * 239.99803 * 8 6 4 12 12 C 1.53004 * 109.46976 * 119.99945 * 2 1 3 13 13 N 1.46499 * 109.47216 * 300.00012 * 12 2 1 14 14 C 1.38776 * 120.00159 * 179.97438 * 13 12 2 15 15 N 1.32584 * 120.15212 * 0.30170 * 14 13 12 16 16 C 1.32267 * 119.99424 * 180.27857 * 15 14 13 17 17 C 1.38296 * 120.31760 * 359.43954 * 16 15 14 18 18 N 1.32114 * 120.30986 * 0.25816 * 17 16 15 19 19 C 1.32755 * 119.99893 * 0.02562 * 18 17 16 20 20 C 1.48307 * 120.15831 * 180.02562 * 19 18 17 21 21 N 1.34093 * 126.68338 * 180.02562 * 20 19 18 22 22 N 1.28982 * 107.26295 * 179.97438 * 21 20 19 23 23 N 1.28727 * 108.95904 * 0.02562 * 22 21 20 24 24 H 0.97010 * 125.33191 * 179.97438 * 23 22 21 25 25 N 1.28864 * 109.33388 * 359.72269 * 23 22 21 26 26 H 1.08997 * 109.47317 * 300.00034 * 1 2 3 27 27 H 1.08998 * 109.46963 * 60.00266 * 1 2 3 28 28 H 1.09007 * 109.47153 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47149 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47125 * 300.00130 * 3 2 1 31 31 H 1.09005 * 109.46849 * 60.00009 * 3 2 1 32 32 H 0.96999 * 120.00218 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47127 * 179.97438 * 12 2 1 34 34 H 1.08999 * 109.47022 * 60.00487 * 12 2 1 35 35 H 0.97000 * 119.99794 * 359.97438 * 13 12 2 36 36 H 1.08002 * 119.84412 * 179.72463 * 16 15 14 37 37 H 1.07993 * 119.84139 * 180.28476 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1455 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8161 11 1 3.1467 -0.1874 -4.8164 12 6 2.0399 -0.7213 1.2493 13 7 1.5516 -0.0307 2.4454 14 6 1.8864 -0.5051 3.7059 15 7 2.6529 -1.5796 3.8311 16 6 2.9655 -2.0323 5.0339 17 6 2.5060 -1.3832 6.1653 18 7 1.7463 -0.3080 6.0549 19 6 1.4203 0.1539 4.8537 20 6 0.5682 1.3610 4.7256 21 7 0.1611 1.9368 3.5851 22 7 -0.5594 2.9569 3.9073 23 7 -0.6170 3.0397 5.1906 24 1 -1.0971 3.7203 5.6879 25 7 0.0587 2.0738 5.7112 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 0.7090 1.1614 -3.4844 33 1 3.1299 -0.7217 1.2491 34 1 1.6767 -1.7489 1.2492 35 1 0.9942 0.7582 2.3564 36 1 3.5864 -2.9104 5.1331 37 1 2.7697 -1.7568 7.1436 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609082971.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:07 Heat of formation + Delta-G solvation = 160.001901 kcal Electronic energy + Delta-G solvation = -22959.583922 eV Core-core repulsion = 19581.722801 eV Total energy + Delta-G solvation = -3377.861120 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.135 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.55251 -41.94019 -38.82656 -36.21847 -35.77549 -35.05276 -33.85539 -32.91879 -30.68903 -27.61636 -27.58362 -27.04294 -26.46289 -25.47501 -23.91390 -23.46130 -20.70482 -20.32100 -19.08399 -18.31758 -18.25204 -17.76611 -17.59063 -16.64260 -16.21538 -15.84736 -15.43623 -15.08448 -14.93452 -14.75837 -14.13564 -13.95608 -13.37359 -13.34278 -13.07812 -12.88012 -12.67843 -12.52917 -12.48790 -12.43351 -12.31333 -12.25286 -12.08889 -11.94025 -11.46583 -11.16524 -10.86119 -10.69542 -10.36658 -10.08438 -8.71299 -7.98230 -6.15210 -0.49402 0.07287 0.36945 1.14045 1.35356 1.44739 1.48015 1.58025 2.06243 2.46371 2.57914 2.87864 2.91198 3.25064 3.39507 3.60636 3.83742 4.21579 4.28265 4.45299 4.51474 4.55568 4.55886 4.73000 4.97683 5.07454 5.15505 5.19298 5.32208 5.45926 5.58127 5.65608 5.69371 6.07156 6.10617 6.15269 6.23155 6.44567 6.69370 6.89876 6.95230 7.17813 7.52599 9.01457 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.019147 B = 0.004892 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.055141 B = 5722.775680 C = 6993.773019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.051 3.949 3 C -0.119 4.119 4 C -0.522 4.522 5 H 0.053 0.947 6 C 0.024 3.976 7 N -0.903 5.903 8 Si 0.951 3.049 9 H -0.269 1.269 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.154 3.846 13 N -0.691 5.691 14 C 0.382 3.618 15 N -0.524 5.524 16 C 0.141 3.859 17 C -0.019 4.019 18 N -0.383 5.383 19 C 0.031 3.969 20 C 0.228 3.772 21 N -0.310 5.310 22 N -0.044 5.044 23 N -0.194 5.194 24 H 0.497 0.503 25 N -0.270 5.270 26 H 0.022 0.978 27 H 0.062 0.938 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.062 0.938 31 H 0.022 0.978 32 H 0.259 0.741 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.423 0.577 36 H 0.219 0.781 37 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.032 0.035 18.692 18.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.050 3.950 3 C -0.177 4.177 4 C -0.560 4.560 5 H 0.072 0.928 6 C -0.176 4.176 7 N -0.542 5.542 8 Si 0.777 3.223 9 H -0.194 1.194 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.030 3.970 13 N -0.326 5.326 14 C 0.139 3.861 15 N -0.248 5.248 16 C -0.025 4.025 17 C -0.185 4.185 18 N -0.098 5.098 19 C -0.116 4.116 20 C -0.053 4.053 21 N -0.184 5.184 22 N -0.039 5.039 23 N -0.046 5.046 24 H 0.357 0.643 25 N -0.123 5.123 26 H 0.041 0.959 27 H 0.081 0.919 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.081 0.919 31 H 0.041 0.959 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.271 0.729 36 H 0.235 0.765 37 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -0.456 0.642 17.929 17.947 hybrid contribution -0.090 0.120 -0.645 0.662 sum -0.546 0.762 17.285 17.310 Atomic orbital electron populations 1.21649 0.97814 0.98424 0.99766 1.18360 0.92802 0.92826 0.91028 1.21651 0.97813 0.98420 0.99767 1.21275 1.31553 1.12157 0.91049 0.92849 1.25547 0.95155 0.95592 1.01278 1.69960 1.37231 1.23567 1.23469 0.85622 0.78026 0.78742 0.79896 1.19364 1.20949 1.20939 1.21376 0.97383 0.95069 0.83181 1.45833 1.52842 1.32073 1.01847 1.19374 0.89971 0.90054 0.86722 1.68318 1.15559 1.12066 1.28843 1.24572 0.93074 0.98486 0.86347 1.24060 0.98838 0.93216 1.02427 1.67979 1.08009 1.11288 1.22538 1.17778 1.06958 0.96959 0.89954 1.23031 0.99895 0.97460 0.84931 1.75486 1.12695 1.04941 1.25258 1.78862 1.14128 1.13512 0.97416 1.47838 1.32147 1.20457 1.04133 0.64316 1.75041 1.11172 1.00903 1.25227 0.95906 0.91932 0.96052 0.96058 0.91919 0.95916 0.93150 0.93318 0.93324 0.72876 0.76471 0.76695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.85 8.08 71.98 0.58 -5.27 16 2 C 0.05 2.49 0.50 -52.93 -0.03 2.46 16 3 C -0.12 -5.85 8.08 71.98 0.58 -5.27 16 4 C -0.52 -28.00 8.01 25.60 0.21 -27.79 16 5 H 0.05 2.85 7.74 -2.91 -0.02 2.82 16 6 C 0.02 1.27 5.15 84.65 0.44 1.70 16 7 N -0.90 -50.06 9.35 21.45 0.20 -49.86 16 8 Si 0.95 43.00 29.54 68.60 2.03 45.02 16 9 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 C 0.15 6.76 4.54 86.38 0.39 7.16 16 13 N -0.69 -27.72 5.04 -344.08 -1.73 -29.45 16 14 C 0.38 13.68 7.49 133.38 1.00 14.68 16 15 N -0.52 -16.60 9.73 -191.95 -1.87 -18.47 16 16 C 0.14 2.92 11.21 84.64 0.95 3.86 16 17 C -0.02 -0.38 11.20 84.66 0.95 0.57 16 18 N -0.38 -10.73 10.44 -183.80 -1.92 -12.65 16 19 C 0.03 1.04 6.78 42.19 0.29 1.33 16 20 C 0.23 7.46 8.01 137.30 1.10 8.56 16 21 N -0.31 -10.71 9.47 -52.24 -0.49 -11.21 16 22 N -0.04 -1.24 13.47 37.02 0.50 -0.75 16 23 N -0.19 -3.92 7.90 37.02 0.29 -3.63 16 24 H 0.50 4.23 8.96 -347.52 -3.12 1.12 16 25 N -0.27 -7.23 12.39 -52.19 -0.65 -7.87 16 26 H 0.02 1.03 6.86 -2.39 -0.02 1.01 16 27 H 0.06 3.37 6.07 -2.39 -0.01 3.35 16 28 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 3.38 6.07 -2.38 -0.01 3.36 16 31 H 0.02 1.02 6.86 -2.38 -0.02 1.01 16 32 H 0.26 13.76 8.31 -92.71 -0.77 12.98 16 33 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.42 17.30 2.72 -92.71 -0.25 17.05 16 36 H 0.22 2.25 8.06 -2.91 -0.02 2.23 16 37 H 0.22 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -69.32 309.97 0.58 -68.73 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -2.23 Total: 18.13 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 6.45 Total: 1.99 kcal Atomic # 7 Polarization: -128.21 SS G_CDS: -5.67 Total: -133.88 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -69.32 0.58 -68.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609082971.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.736 kcal (2) G-P(sol) polarization free energy of solvation -69.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds