Wall clock time and date at job start Tue Mar 31 2020 06:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36940 * 119.99891 * 2 1 4 4 H 1.08001 * 120.00369 * 321.90764 * 3 2 1 5 5 C 1.38813 * 119.99952 * 141.90708 * 3 2 1 6 6 N 1.31618 * 120.00261 * 157.23355 * 5 3 2 7 7 Si 1.86803 * 119.99540 * 337.23193 * 5 3 2 8 8 H 1.48500 * 109.47151 * 95.67988 * 7 5 3 9 9 H 1.48505 * 109.47097 * 215.67663 * 7 5 3 10 10 H 1.48499 * 109.47724 * 335.67787 * 7 5 3 11 11 C 1.46494 * 119.99965 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47510 * 89.99892 * 11 2 1 13 13 H 1.09003 * 109.46872 * 304.99872 * 12 11 2 14 14 O 1.42898 * 109.47289 * 64.99695 * 12 11 2 15 15 C 1.50700 * 109.47447 * 185.00020 * 12 11 2 16 16 C 1.38339 * 119.93983 * 280.00190 * 15 12 11 17 17 C 1.38299 * 120.23554 * 180.02562 * 16 15 12 18 18 C 1.38043 * 120.11798 * 0.02562 * 17 16 15 19 19 C 1.39282 * 119.88335 * 359.97438 * 18 17 16 20 20 C 1.48462 * 120.12078 * 179.97438 * 19 18 17 21 21 N 1.34039 * 126.67406 * 179.68974 * 20 19 18 22 22 N 1.28992 * 107.26977 * 179.83975 * 21 20 19 23 23 N 1.28731 * 108.93803 * 0.43225 * 22 21 20 24 24 H 0.97001 * 125.33806 * 179.72727 * 23 22 21 25 25 N 1.28874 * 109.32035 * 359.72699 * 23 22 21 26 26 C 1.38000 * 119.94277 * 100.01837 * 15 12 11 27 27 H 1.08994 * 109.47049 * 265.69690 * 1 2 3 28 28 H 1.09002 * 109.47132 * 25.69874 * 1 2 3 29 29 H 1.08997 * 109.46737 * 145.69583 * 1 2 3 30 30 H 0.97001 * 119.99687 * 180.02562 * 6 5 3 31 31 H 1.08995 * 109.47399 * 329.99672 * 11 2 1 32 32 H 1.09010 * 109.47014 * 209.99888 * 11 2 1 33 33 H 0.96707 * 113.99563 * 60.00155 * 14 12 11 34 34 H 1.08000 * 119.87907 * 0.04137 * 16 15 12 35 35 H 1.07993 * 119.93789 * 179.97438 * 17 16 15 36 36 H 1.08003 * 120.05832 * 179.70386 * 18 17 16 37 37 H 1.08004 * 120.06026 * 0.02562 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7823 2.0217 -0.5770 5 6 3.3161 1.3140 0.7417 6 7 4.2017 2.2337 0.4220 7 14 3.6287 0.1809 2.1935 8 1 4.4692 -0.9628 1.7569 9 1 4.3320 0.9314 3.2647 10 1 2.3336 -0.3267 2.7133 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 1 1.5061 -1.7541 -1.9823 14 8 3.3209 -0.7717 -2.0818 15 6 3.0962 -3.0724 -1.4456 16 6 4.4528 -3.1956 -1.2041 17 6 5.0499 -4.4430 -1.2054 18 6 4.2943 -5.5724 -1.4485 19 6 2.9281 -5.4541 -1.6922 20 6 2.1106 -6.6652 -1.9549 21 7 0.7930 -6.7044 -2.1980 22 7 0.4731 -7.9413 -2.3761 23 7 1.5274 -8.6684 -2.2458 24 1 1.5564 -9.6345 -2.3284 25 7 2.5382 -7.9116 -1.9885 26 6 2.3315 -4.1950 -1.6891 27 1 -0.3633 -0.0771 1.0247 28 1 -0.3633 0.9260 -0.4456 29 1 -0.3633 -0.8489 -0.5792 30 1 5.0169 2.3228 0.9401 31 1 1.6085 -2.0285 0.5129 32 1 3.1500 -1.1385 0.5134 33 1 4.1837 -0.6804 -1.6545 34 1 5.0475 -2.3145 -1.0136 35 1 6.1094 -4.5336 -1.0166 36 1 4.7625 -6.5457 -1.4540 37 1 1.2726 -4.0977 -1.8782 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609271191.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:53 Heat of formation + Delta-G solvation = 131.614393 kcal Electronic energy + Delta-G solvation = -22515.114616 eV Core-core repulsion = 19103.729770 eV Total energy + Delta-G solvation = -3411.384846 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.62337 -39.57278 -37.02333 -34.81514 -34.49961 -33.62231 -31.74536 -31.30509 -30.52948 -27.94854 -26.09882 -24.97355 -24.58571 -23.45976 -22.09438 -21.03234 -20.41564 -19.32728 -17.37478 -17.31297 -16.74909 -15.77805 -15.69262 -15.06314 -15.01955 -14.29815 -14.08400 -13.75435 -13.57499 -13.34633 -13.04923 -12.60196 -12.52661 -12.44987 -11.93063 -11.72162 -11.55090 -11.41651 -11.28725 -11.24712 -11.05666 -10.80993 -10.55589 -10.42793 -10.01850 -9.58784 -9.41460 -8.80397 -8.63464 -8.45976 -6.76378 -5.96140 -3.35016 0.62608 1.05476 1.39743 2.03613 2.27706 3.25257 3.45754 3.51778 3.53583 3.80908 4.04156 4.51457 4.76588 4.93730 5.03925 5.08286 5.18129 5.26192 5.32250 5.44273 5.47770 5.57240 5.71184 5.94161 6.01203 6.02204 6.14264 6.28209 6.30462 6.38946 6.45019 6.47333 6.69090 6.73835 6.84940 6.92558 7.96764 8.06569 8.39660 8.45338 8.99724 9.72969 10.13429 11.19556 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.023781 B = 0.004279 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.129346 B = 6541.852013 C = 7015.329278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.604 5.604 3 C -0.250 4.250 4 H 0.078 0.922 5 C 0.034 3.966 6 N -0.898 5.898 7 Si 0.867 3.133 8 H -0.287 1.287 9 H -0.301 1.301 10 H -0.271 1.271 11 C 0.113 3.887 12 C 0.127 3.873 13 H 0.100 0.900 14 O -0.531 6.531 15 C -0.105 4.105 16 C -0.089 4.089 17 C -0.119 4.119 18 C -0.088 4.088 19 C -0.027 4.027 20 C 0.229 3.771 21 N -0.266 5.266 22 N -0.052 5.052 23 N -0.231 5.231 24 H 0.474 0.526 25 N -0.298 5.298 26 C -0.068 4.068 27 H 0.008 0.992 28 H 0.047 0.953 29 H 0.027 0.973 30 H 0.261 0.739 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.369 0.631 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.800 -21.242 -4.141 21.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.326 5.326 3 C -0.379 4.379 4 H 0.096 0.904 5 C -0.165 4.165 6 N -0.539 5.539 7 Si 0.698 3.302 8 H -0.215 1.215 9 H -0.229 1.229 10 H -0.196 1.196 11 C -0.014 4.014 12 C 0.064 3.936 13 H 0.118 0.882 14 O -0.335 6.335 15 C -0.107 4.107 16 C -0.108 4.108 17 C -0.138 4.138 18 C -0.109 4.109 19 C -0.030 4.030 20 C -0.051 4.051 21 N -0.139 5.139 22 N -0.047 5.047 23 N -0.077 5.077 24 H 0.328 0.672 25 N -0.150 5.150 26 C -0.089 4.089 27 H 0.026 0.974 28 H 0.066 0.934 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.217 0.783 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.783 -21.377 -4.622 21.944 hybrid contribution 1.216 -1.259 1.358 2.215 sum -0.567 -22.636 -3.264 22.877 Atomic orbital electron populations 1.21108 0.84333 0.99291 0.97460 1.43950 1.00815 1.01767 1.86105 1.18767 1.05894 0.90393 1.22877 0.90420 1.25412 0.96956 0.96461 0.97714 1.69900 1.08540 1.36108 1.39395 0.87098 0.77937 0.80026 0.85169 1.21479 1.22886 1.19627 1.21905 0.97353 0.88693 0.93422 1.21640 0.92772 0.82071 0.97086 0.88247 1.86616 1.29141 1.62358 1.55425 1.20975 0.94300 0.97253 0.98139 1.21227 0.94654 0.97990 0.96929 1.21032 1.00068 0.91926 1.00725 1.21055 0.92026 0.99272 0.98527 1.17182 0.91969 0.87677 1.06167 1.23765 0.89417 0.91449 1.00461 1.76124 1.11879 1.09056 1.16870 1.78917 1.13234 0.97479 1.15059 1.47717 1.02509 1.12919 1.44536 0.67211 1.74922 1.15597 1.02862 1.21613 1.21006 1.00496 0.90087 0.97264 0.97420 0.93431 0.95382 0.92867 0.93436 0.92321 0.78337 0.85376 0.85283 0.85317 0.84669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.47 10.70 59.85 0.64 3.11 16 2 N -0.60 -14.27 2.45 -181.12 -0.44 -14.71 16 3 C -0.25 -6.91 9.39 -15.06 -0.14 -7.05 16 4 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 5 C 0.03 0.96 5.29 -17.43 -0.09 0.87 16 6 N -0.90 -26.54 13.97 55.49 0.78 -25.77 16 7 Si 0.87 21.53 25.09 -169.99 -4.27 17.26 16 8 H -0.29 -6.69 6.68 56.52 0.38 -6.31 16 9 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 10 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 11 C 0.11 2.36 4.19 -4.05 -0.02 2.35 16 12 C 0.13 2.35 3.45 -27.88 -0.10 2.25 16 13 H 0.10 1.81 8.00 -51.93 -0.42 1.40 16 14 O -0.53 -11.07 12.66 -35.23 -0.45 -11.52 16 15 C -0.11 -1.66 4.97 -104.67 -0.52 -2.18 16 16 C -0.09 -1.29 9.31 -39.52 -0.37 -1.66 16 17 C -0.12 -1.46 10.03 -39.63 -0.40 -1.86 16 18 C -0.09 -1.07 9.70 -39.26 -0.38 -1.45 16 19 C -0.03 -0.36 5.88 -104.89 -0.62 -0.98 16 20 C 0.23 3.00 7.94 -156.31 -1.24 1.75 16 21 N -0.27 -3.63 12.23 32.15 0.39 -3.24 16 22 N -0.05 -0.58 13.47 60.35 0.81 0.24 16 23 N -0.23 -1.89 7.90 60.35 0.48 -1.42 16 24 H 0.47 1.41 8.96 -340.37 -3.05 -1.64 16 25 N -0.30 -3.25 12.08 32.17 0.39 -2.86 16 26 C -0.07 -0.99 9.32 -39.26 -0.37 -1.36 16 27 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.05 0.94 8.01 -51.93 -0.42 0.53 16 29 H 0.03 0.48 8.10 -51.93 -0.42 0.06 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.05 0.92 8.07 -51.93 -0.42 0.50 16 32 H 0.06 1.32 3.38 -51.92 -0.18 1.15 16 33 H 0.37 7.22 7.50 45.56 0.34 7.56 16 34 H 0.13 1.83 6.78 -52.49 -0.36 1.47 16 35 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 36 H 0.13 1.31 7.88 -52.48 -0.41 0.90 16 37 H 0.14 1.89 7.86 -52.48 -0.41 1.48 16 LS Contribution 318.02 15.07 4.79 4.79 Total: -1.00 -33.23 318.02 -7.28 -40.51 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -6.17 Total: 2.92 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -3.60 Total: -6.20 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: 2.40 Total: -47.76 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -0.45 Total: -11.52 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.27 Total: 17.26 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.23 -7.28 -40.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609271191.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.121 kcal (2) G-P(sol) polarization free energy of solvation -33.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds