Wall clock time and date at job start Tue Mar 31 2020 06:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36940 * 119.99891 * 2 1 4 4 H 1.08001 * 120.00369 * 321.90764 * 3 2 1 5 5 C 1.38813 * 119.99952 * 141.90708 * 3 2 1 6 6 N 1.31618 * 120.00261 * 157.23355 * 5 3 2 7 7 Si 1.86803 * 119.99540 * 337.23193 * 5 3 2 8 8 H 1.48500 * 109.47151 * 95.67988 * 7 5 3 9 9 H 1.48505 * 109.47097 * 215.67663 * 7 5 3 10 10 H 1.48499 * 109.47724 * 335.67787 * 7 5 3 11 11 C 1.46494 * 119.99965 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47510 * 89.99892 * 11 2 1 13 13 H 1.09003 * 109.46872 * 304.99872 * 12 11 2 14 14 O 1.42898 * 109.47289 * 64.99695 * 12 11 2 15 15 C 1.50700 * 109.47447 * 185.00020 * 12 11 2 16 16 C 1.38339 * 119.93983 * 280.00190 * 15 12 11 17 17 C 1.38299 * 120.23554 * 180.02562 * 16 15 12 18 18 C 1.38043 * 120.11798 * 0.02562 * 17 16 15 19 19 C 1.39282 * 119.88335 * 359.97438 * 18 17 16 20 20 C 1.48462 * 120.12078 * 179.97438 * 19 18 17 21 21 N 1.34039 * 126.67406 * 179.68974 * 20 19 18 22 22 N 1.28992 * 107.26977 * 179.83975 * 21 20 19 23 23 N 1.28731 * 108.93803 * 0.43225 * 22 21 20 24 24 H 0.97001 * 125.33806 * 179.72727 * 23 22 21 25 25 N 1.28874 * 109.32035 * 359.72699 * 23 22 21 26 26 C 1.38000 * 119.94277 * 100.01837 * 15 12 11 27 27 H 1.08994 * 109.47049 * 265.69690 * 1 2 3 28 28 H 1.09002 * 109.47132 * 25.69874 * 1 2 3 29 29 H 1.08997 * 109.46737 * 145.69583 * 1 2 3 30 30 H 0.97001 * 119.99687 * 180.02562 * 6 5 3 31 31 H 1.08995 * 109.47399 * 329.99672 * 11 2 1 32 32 H 1.09010 * 109.47014 * 209.99888 * 11 2 1 33 33 H 0.96707 * 113.99563 * 60.00155 * 14 12 11 34 34 H 1.08000 * 119.87907 * 0.04137 * 16 15 12 35 35 H 1.07993 * 119.93789 * 179.97438 * 17 16 15 36 36 H 1.08003 * 120.05832 * 179.70386 * 18 17 16 37 37 H 1.08004 * 120.06026 * 0.02562 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7823 2.0217 -0.5770 5 6 3.3161 1.3140 0.7417 6 7 4.2017 2.2337 0.4220 7 14 3.6287 0.1809 2.1935 8 1 4.4692 -0.9628 1.7569 9 1 4.3320 0.9314 3.2647 10 1 2.3336 -0.3267 2.7133 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 1 1.5061 -1.7541 -1.9823 14 8 3.3209 -0.7717 -2.0818 15 6 3.0962 -3.0724 -1.4456 16 6 4.4528 -3.1956 -1.2041 17 6 5.0499 -4.4430 -1.2054 18 6 4.2943 -5.5724 -1.4485 19 6 2.9281 -5.4541 -1.6922 20 6 2.1106 -6.6652 -1.9549 21 7 0.7930 -6.7044 -2.1980 22 7 0.4731 -7.9413 -2.3761 23 7 1.5274 -8.6684 -2.2458 24 1 1.5564 -9.6345 -2.3284 25 7 2.5382 -7.9116 -1.9885 26 6 2.3315 -4.1950 -1.6891 27 1 -0.3633 -0.0771 1.0247 28 1 -0.3633 0.9260 -0.4456 29 1 -0.3633 -0.8489 -0.5792 30 1 5.0169 2.3228 0.9401 31 1 1.6085 -2.0285 0.5129 32 1 3.1500 -1.1385 0.5134 33 1 4.1837 -0.6804 -1.6545 34 1 5.0475 -2.3145 -1.0136 35 1 6.1094 -4.5336 -1.0166 36 1 4.7625 -6.5457 -1.4540 37 1 1.2726 -4.0977 -1.8782 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609271191.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:52 Heat of formation + Delta-G solvation = 106.612425 kcal Electronic energy + Delta-G solvation = -22516.198783 eV Core-core repulsion = 19103.729770 eV Total energy + Delta-G solvation = -3412.469013 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.47831 -40.73009 -38.52674 -36.50470 -35.41779 -34.57450 -33.70026 -32.63686 -31.53572 -29.42969 -27.97205 -25.96733 -25.53192 -24.89308 -23.09002 -22.79765 -21.64189 -20.16567 -19.03455 -18.21948 -18.15554 -17.46970 -16.79529 -16.49716 -16.40599 -15.70945 -15.48142 -15.20745 -14.90370 -14.61397 -14.44301 -14.21022 -13.93166 -13.71067 -13.40100 -13.13726 -12.83592 -12.64387 -12.52208 -12.39743 -12.26929 -12.21915 -12.03419 -11.94977 -11.81439 -11.51339 -10.97570 -10.58953 -9.85190 -9.65969 -8.67066 -8.11570 -5.48532 -0.31898 0.16255 0.35163 1.29228 1.29315 1.41152 1.44360 1.54307 2.44844 2.62664 2.75138 3.05896 3.15286 3.41999 3.73915 3.88220 3.91462 4.06097 4.17984 4.22174 4.35091 4.42297 4.46809 4.58001 4.72735 4.73813 4.81883 4.96524 5.03061 5.10328 5.13804 5.37663 5.42017 5.60571 5.61885 5.88293 6.00309 6.24026 6.86831 7.04781 7.09894 7.67166 8.09917 9.08455 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.023781 B = 0.004279 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.129346 B = 6541.852013 C = 7015.329278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.619 5.619 3 C -0.245 4.245 4 H 0.034 0.966 5 C -0.010 4.010 6 N -0.943 5.943 7 Si 0.930 3.070 8 H -0.262 1.262 9 H -0.310 1.310 10 H -0.271 1.271 11 C 0.111 3.889 12 C 0.135 3.865 13 H 0.098 0.902 14 O -0.553 6.553 15 C -0.119 4.119 16 C -0.103 4.103 17 C -0.111 4.111 18 C -0.078 4.078 19 C -0.030 4.030 20 C 0.213 3.787 21 N -0.296 5.296 22 N -0.057 5.057 23 N -0.199 5.199 24 H 0.495 0.505 25 N -0.290 5.290 26 C -0.073 4.073 27 H 0.016 0.984 28 H 0.040 0.960 29 H 0.057 0.943 30 H 0.262 0.738 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.371 0.629 34 H 0.125 0.875 35 H 0.160 0.840 36 H 0.153 0.847 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.347 -24.918 -3.682 25.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.343 5.343 3 C -0.375 4.375 4 H 0.052 0.948 5 C -0.207 4.207 6 N -0.587 5.587 7 Si 0.759 3.241 8 H -0.188 1.188 9 H -0.239 1.239 10 H -0.195 1.195 11 C -0.014 4.014 12 C 0.074 3.926 13 H 0.116 0.884 14 O -0.359 6.359 15 C -0.120 4.120 16 C -0.122 4.122 17 C -0.129 4.129 18 C -0.098 4.098 19 C -0.034 4.034 20 C -0.067 4.067 21 N -0.168 5.168 22 N -0.052 5.052 23 N -0.050 5.050 24 H 0.354 0.646 25 N -0.143 5.143 26 C -0.094 4.094 27 H 0.035 0.965 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.219 0.781 34 H 0.143 0.857 35 H 0.178 0.822 36 H 0.171 0.829 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.360 -25.118 -4.176 25.499 hybrid contribution 1.022 -0.257 1.113 1.533 sum -0.339 -25.375 -3.062 25.561 Atomic orbital electron populations 1.21214 0.82444 1.00335 0.98428 1.44084 1.02184 1.01435 1.86607 1.18556 1.06052 0.91039 1.21873 0.94808 1.25878 0.96718 0.98315 0.99742 1.70017 1.09339 1.38677 1.40692 0.86067 0.77970 0.78828 0.81194 1.18849 1.23853 1.19549 1.21957 0.96612 0.87813 0.95068 1.21423 0.92735 0.83317 0.95167 0.88383 1.86581 1.29605 1.63542 1.56123 1.20606 0.95025 0.95789 1.00570 1.21343 0.94206 0.99112 0.97515 1.21333 1.01524 0.90783 0.99258 1.21356 0.91368 1.00333 0.96749 1.17294 0.92720 0.87487 1.05854 1.23723 0.89396 0.91961 1.01600 1.76110 1.12471 1.10193 1.18061 1.78866 1.13778 0.97148 1.15395 1.47789 1.01351 1.13831 1.42032 0.64580 1.74872 1.15988 1.02270 1.21169 1.20968 1.00474 0.90334 0.97578 0.96545 0.94104 0.92391 0.92851 0.91414 0.93758 0.78093 0.85705 0.82245 0.82888 0.84773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.73 10.70 127.77 1.37 6.10 16 2 N -0.62 -29.21 2.45 -726.94 -1.78 -30.99 16 3 C -0.25 -13.89 9.39 84.03 0.79 -13.10 16 4 H 0.03 2.18 8.06 -2.91 -0.02 2.15 16 5 C -0.01 -0.57 5.29 84.86 0.45 -0.12 16 6 N -0.94 -57.34 13.97 21.65 0.30 -57.04 16 7 Si 0.93 44.63 25.09 68.60 1.72 46.35 16 8 H -0.26 -11.41 6.68 99.48 0.66 -10.75 16 9 H -0.31 -15.21 7.11 99.48 0.71 -14.51 16 10 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 11 C 0.11 4.54 4.19 86.38 0.36 4.90 16 12 C 0.14 4.96 3.45 29.85 0.10 5.07 16 13 H 0.10 3.56 8.00 -2.39 -0.02 3.54 16 14 O -0.55 -23.47 12.66 -148.98 -1.89 -25.35 16 15 C -0.12 -3.61 4.97 -19.90 -0.10 -3.70 16 16 C -0.10 -2.81 9.31 22.31 0.21 -2.60 16 17 C -0.11 -2.36 10.03 22.24 0.22 -2.14 16 18 C -0.08 -1.62 9.70 22.47 0.22 -1.40 16 19 C -0.03 -0.75 5.88 -20.04 -0.12 -0.86 16 20 C 0.21 5.07 7.94 137.38 1.09 6.16 16 21 N -0.30 -7.57 12.23 -52.19 -0.64 -8.21 16 22 N -0.06 -1.15 13.47 37.02 0.50 -0.65 16 23 N -0.20 -2.65 7.90 37.02 0.29 -2.35 16 24 H 0.49 1.25 8.96 -347.54 -3.12 -1.87 16 25 N -0.29 -5.39 12.08 -52.13 -0.63 -6.02 16 26 C -0.07 -2.03 9.32 22.48 0.21 -1.82 16 27 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.04 1.63 8.01 -2.39 -0.02 1.61 16 29 H 0.06 1.91 8.10 -2.39 -0.02 1.89 16 30 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 31 H 0.07 2.47 8.07 -2.39 -0.02 2.45 16 32 H 0.04 1.94 3.38 -2.38 -0.01 1.93 16 33 H 0.37 14.91 7.50 -74.05 -0.56 14.35 16 34 H 0.13 3.43 6.78 -2.91 -0.02 3.41 16 35 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 36 H 0.15 2.43 7.88 -2.91 -0.02 2.41 16 37 H 0.13 3.65 7.86 -2.91 -0.02 3.62 16 Total: -1.00 -72.52 318.02 0.10 -72.41 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -2.58 Total: 15.37 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: 4.80 Total: -3.53 kcal Atomic # 7 Polarization: -103.31 SS G_CDS: -1.95 Total: -105.26 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -1.89 Total: -25.35 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.72 Total: 46.35 kcal Total: -72.52 0.10 -72.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609271191.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.025 kcal (2) G-P(sol) polarization free energy of solvation -72.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds