Wall clock time and date at job start Tue Mar 31 2020 06:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86795 * 120.00127 * 2 1 4 4 H 1.48510 * 109.46848 * 270.00052 * 3 2 1 5 5 H 1.48503 * 109.47447 * 29.99455 * 3 2 1 6 6 H 1.48499 * 109.47415 * 149.99808 * 3 2 1 7 7 C 1.38810 * 119.99654 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00039 * 202.63143 * 7 2 1 9 9 N 1.36938 * 120.00155 * 22.64091 * 7 2 1 10 10 C 1.46503 * 119.99913 * 11.34861 * 9 7 2 11 11 C 1.50700 * 109.47265 * 264.29530 * 10 9 7 12 12 O 1.20821 * 120.00041 * 359.77589 * 11 10 9 13 13 O 1.34226 * 119.99790 * 179.77466 * 11 10 9 14 14 C 1.46498 * 119.99836 * 191.35836 * 9 7 2 15 15 C 1.53004 * 109.46742 * 265.87139 * 14 9 7 16 16 H 1.09001 * 109.67767 * 305.51520 * 15 14 9 17 17 C 1.53323 * 109.68017 * 185.00169 * 15 14 9 18 18 C 1.52727 * 108.39866 * 170.39888 * 17 15 14 19 19 C 1.50624 * 110.59441 * 51.09641 * 18 17 15 20 20 C 1.38906 * 117.75696 * 162.34019 * 19 18 17 21 21 C 1.37938 * 120.54953 * 179.63859 * 20 19 18 22 22 C 1.38259 * 119.76554 * 359.93178 * 21 20 19 23 23 C 1.37931 * 119.77743 * 0.14771 * 22 21 20 24 24 C 1.37670 * 122.56317 * 342.42970 * 19 18 17 25 25 C 1.50628 * 122.55989 * 0.30895 * 24 19 18 26 26 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47038 * 24.30134 * 10 9 7 28 28 H 1.09002 * 109.46803 * 144.29511 * 10 9 7 29 29 H 0.96702 * 117.00119 * 179.97438 * 13 11 10 30 30 H 1.09002 * 109.47384 * 145.87139 * 14 9 7 31 31 H 1.09000 * 109.47526 * 25.87163 * 14 9 7 32 32 H 1.09005 * 109.68265 * 50.66673 * 17 15 14 33 33 H 1.09001 * 109.70954 * 290.14102 * 17 15 14 34 34 H 1.09000 * 109.24951 * 290.81160 * 18 17 15 35 35 H 1.08997 * 109.25565 * 171.38532 * 18 17 15 36 36 H 1.08008 * 119.72693 * 359.65344 * 20 19 18 37 37 H 1.07998 * 120.11125 * 179.91818 * 21 20 19 38 38 H 1.08007 * 120.10845 * 180.11586 * 22 21 20 39 39 H 1.08002 * 119.72582 * 180.02562 * 23 22 21 40 40 H 1.09001 * 109.39862 * 222.18283 * 25 24 19 41 41 H 1.09001 * 109.00487 * 102.77704 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4478 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0279 -1.2381 0.3605 9 7 1.4047 -2.3426 -0.4555 10 6 0.1282 -2.2588 -1.1696 11 6 -1.0043 -2.4923 -0.2032 12 8 -0.7692 -2.7107 0.9616 13 8 -2.2742 -2.4575 -0.6366 14 6 2.0332 -3.6464 -0.2290 15 6 2.8794 -4.0229 -1.4469 16 1 2.2663 -3.9806 -2.3471 17 6 3.4386 -5.4394 -1.2690 18 6 4.0712 -5.8771 -2.5884 19 6 5.0337 -4.8313 -3.0871 20 6 5.9609 -5.2115 -4.0490 21 6 6.8645 -4.2985 -4.5514 22 6 6.8471 -2.9933 -4.0954 23 6 5.9283 -2.6141 -3.1391 24 6 5.0234 -3.5344 -2.6253 25 6 4.0531 -3.0545 -1.5779 26 1 -0.4849 0.8401 -0.0004 27 1 0.0263 -1.2700 -1.6168 28 1 0.0997 -3.0164 -1.9527 29 1 -2.9667 -2.6136 0.0202 30 1 1.2610 -4.4003 -0.0760 31 1 2.6701 -3.5943 0.6540 32 1 2.6311 -6.1224 -1.0047 33 1 4.1928 -5.4408 -0.4821 34 1 3.2872 -6.0270 -3.3306 35 1 4.6060 -6.8147 -2.4371 36 1 5.9743 -6.2306 -4.4067 37 1 7.5832 -4.6021 -5.2981 38 1 7.5509 -2.2734 -4.4863 39 1 5.9151 -1.5943 -2.7838 40 1 3.6774 -2.0699 -1.8563 41 1 4.5700 -2.9845 -0.6207 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610622479.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:03 Heat of formation + Delta-G solvation = -59.407551 kcal Electronic energy + Delta-G solvation = -23409.228516 eV Core-core repulsion = 20060.807930 eV Total energy + Delta-G solvation = -3348.420587 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.82306 -38.70587 -36.80353 -35.10325 -34.31113 -32.37043 -31.47212 -30.02605 -28.70136 -27.17200 -25.69599 -23.30285 -22.40673 -21.89332 -21.07869 -19.87355 -18.80256 -16.89476 -16.63493 -16.21813 -15.31050 -15.29935 -15.10481 -14.75302 -14.13326 -14.11130 -13.80027 -13.50203 -13.30020 -12.99470 -12.92568 -12.53013 -12.03561 -11.92853 -11.55216 -11.41888 -11.21132 -11.17894 -10.99793 -10.73262 -10.60366 -10.28127 -10.21094 -10.19351 -10.01540 -9.88312 -9.68369 -9.19943 -8.56110 -8.52032 -8.28135 -7.06787 -5.91903 -3.21164 1.55248 1.59425 3.35326 3.42511 3.44153 3.87986 3.94933 4.33068 4.56200 4.86263 4.96823 5.13579 5.15874 5.19676 5.33536 5.37903 5.42112 5.59967 5.65229 5.73025 5.85160 5.96410 6.10813 6.17196 6.18616 6.25561 6.33030 6.39142 6.46094 6.49865 6.61861 6.67431 6.73012 6.86844 6.94386 7.03447 7.04413 7.16209 7.25948 7.68876 7.84812 8.18940 9.02806 9.42098 9.72691 10.14780 11.18903 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016113 B = 0.005406 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.300828 B = 5178.449357 C = 6476.870843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.004 4.004 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.280 1.280 7 C -0.245 4.245 8 H 0.083 0.917 9 N -0.567 5.567 10 C 0.185 3.815 11 C 0.476 3.524 12 O -0.523 6.523 13 O -0.543 6.543 14 C 0.154 3.846 15 C -0.102 4.102 16 H 0.067 0.933 17 C -0.115 4.115 18 C -0.077 4.077 19 C -0.080 4.080 20 C -0.125 4.125 21 C -0.134 4.134 22 C -0.127 4.127 23 C -0.121 4.121 24 C -0.061 4.061 25 C -0.070 4.070 26 H 0.257 0.743 27 H 0.123 0.877 28 H 0.049 0.951 29 H 0.379 0.621 30 H 0.037 0.963 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.094 0.906 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.627 -9.398 -7.908 14.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.201 4.201 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.205 1.205 7 C -0.373 4.373 8 H 0.100 0.900 9 N -0.286 5.286 10 C 0.055 3.945 11 C 0.317 3.683 12 O -0.410 6.410 13 O -0.353 6.353 14 C 0.027 3.973 15 C -0.123 4.123 16 H 0.085 0.915 17 C -0.153 4.153 18 C -0.114 4.114 19 C -0.080 4.080 20 C -0.143 4.143 21 C -0.152 4.152 22 C -0.145 4.145 23 C -0.139 4.139 24 C -0.061 4.061 25 C -0.107 4.107 26 H 0.067 0.933 27 H 0.141 0.859 28 H 0.067 0.933 29 H 0.234 0.766 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.139 0.861 40 H 0.113 0.887 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.942 -9.234 -7.837 14.483 hybrid contribution -0.090 0.957 0.598 1.132 sum 7.852 -8.277 -7.240 13.512 Atomic orbital electron populations 1.69910 1.05238 1.25824 1.54419 1.24777 0.95249 0.98406 1.01670 0.86217 0.79062 0.83500 0.77668 1.21376 1.21981 1.20499 1.19338 0.95816 0.84842 1.37348 0.89965 1.44017 1.18548 1.02233 1.63800 1.20496 0.81009 1.02953 0.90021 1.25583 0.82206 0.69811 0.90728 1.90503 1.84371 1.46002 1.20103 1.84657 1.18511 1.85603 1.46533 1.20860 0.94671 0.87342 0.94439 1.21752 0.96561 0.92849 1.01116 0.91486 1.21578 0.99861 0.97417 0.96409 1.20445 0.97078 0.96084 0.97803 1.19668 0.97005 0.94374 0.96924 1.21102 0.96173 0.99274 0.97756 1.20947 0.99593 0.93869 1.00774 1.21018 0.99188 0.96178 0.98073 1.21263 0.95697 0.99655 0.97319 1.20011 0.96382 0.92509 0.97198 1.20535 0.93481 1.00687 0.96010 0.93295 0.85908 0.93331 0.76554 0.94433 0.92912 0.91774 0.91976 0.90969 0.91483 0.86772 0.86748 0.86621 0.86120 0.88728 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.28 9.37 55.49 0.52 -24.76 16 2 C 0.00 -0.10 4.92 -17.43 -0.09 -0.19 16 3 Si 0.91 21.12 29.61 -169.99 -5.03 16.09 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.24 -6.23 8.30 -15.06 -0.12 -6.36 16 8 H 0.08 2.05 7.79 -52.49 -0.41 1.64 16 9 N -0.57 -13.15 1.88 -174.60 -0.33 -13.48 16 10 C 0.18 4.23 5.51 -5.19 -0.03 4.20 16 11 C 0.48 11.41 6.69 36.01 0.24 11.65 16 12 O -0.52 -14.27 17.13 -18.75 -0.32 -14.59 16 13 O -0.54 -11.06 13.42 -39.25 -0.53 -11.59 16 14 C 0.15 3.00 5.11 -4.04 -0.02 2.98 16 15 C -0.10 -1.65 2.41 -90.59 -0.22 -1.87 16 16 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 17 C -0.11 -1.53 5.28 -26.70 -0.14 -1.67 16 18 C -0.08 -0.94 5.67 -28.06 -0.16 -1.10 16 19 C -0.08 -1.10 5.74 -104.62 -0.60 -1.70 16 20 C -0.12 -1.55 9.61 -39.44 -0.38 -1.93 16 21 C -0.13 -1.60 10.05 -39.68 -0.40 -2.00 16 22 C -0.13 -1.60 10.05 -39.69 -0.40 -2.00 16 23 C -0.12 -1.74 9.61 -39.44 -0.38 -2.12 16 24 C -0.06 -0.93 5.74 -104.61 -0.60 -1.53 16 25 C -0.07 -1.16 4.25 -28.06 -0.12 -1.28 16 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.12 3.07 6.01 -51.93 -0.31 2.76 16 28 H 0.05 0.96 8.11 -51.93 -0.42 0.54 16 29 H 0.38 6.14 9.10 45.56 0.41 6.56 16 30 H 0.04 0.73 8.10 -51.93 -0.42 0.31 16 31 H 0.05 1.06 7.97 -51.93 -0.41 0.65 16 32 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 33 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 36 H 0.11 1.16 8.05 -52.48 -0.42 0.74 16 37 H 0.11 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 39 H 0.12 1.65 8.05 -52.49 -0.42 1.23 16 40 H 0.09 1.77 7.18 -51.93 -0.37 1.40 16 41 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 LS Contribution 335.16 15.07 5.05 5.05 Total: -1.00 -30.81 335.16 -9.34 -40.15 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -5.29 Total: 8.03 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -3.41 Total: -4.90 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.19 Total: -38.24 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.85 Total: -26.18 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.81 -9.34 -40.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610622479.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.255 kcal (2) G-P(sol) polarization free energy of solvation -30.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds