Wall clock time and date at job start Tue Mar 31 2020 06:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86795 * 120.00127 * 2 1 4 4 H 1.48510 * 109.46848 * 270.00052 * 3 2 1 5 5 H 1.48503 * 109.47447 * 29.99455 * 3 2 1 6 6 H 1.48499 * 109.47415 * 149.99808 * 3 2 1 7 7 C 1.38810 * 119.99654 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00039 * 202.63143 * 7 2 1 9 9 N 1.36938 * 120.00155 * 22.64091 * 7 2 1 10 10 C 1.46503 * 119.99913 * 11.34861 * 9 7 2 11 11 C 1.50700 * 109.47265 * 264.29530 * 10 9 7 12 12 O 1.20821 * 120.00041 * 359.77589 * 11 10 9 13 13 O 1.34226 * 119.99790 * 179.77466 * 11 10 9 14 14 C 1.46498 * 119.99836 * 191.35836 * 9 7 2 15 15 C 1.53004 * 109.46742 * 265.87139 * 14 9 7 16 16 H 1.09001 * 109.67767 * 305.51520 * 15 14 9 17 17 C 1.53323 * 109.68017 * 185.00169 * 15 14 9 18 18 C 1.52727 * 108.39866 * 170.39888 * 17 15 14 19 19 C 1.50624 * 110.59441 * 51.09641 * 18 17 15 20 20 C 1.38906 * 117.75696 * 162.34019 * 19 18 17 21 21 C 1.37938 * 120.54953 * 179.63859 * 20 19 18 22 22 C 1.38259 * 119.76554 * 359.93178 * 21 20 19 23 23 C 1.37931 * 119.77743 * 0.14771 * 22 21 20 24 24 C 1.37670 * 122.56317 * 342.42970 * 19 18 17 25 25 C 1.50628 * 122.55989 * 0.30895 * 24 19 18 26 26 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47038 * 24.30134 * 10 9 7 28 28 H 1.09002 * 109.46803 * 144.29511 * 10 9 7 29 29 H 0.96702 * 117.00119 * 179.97438 * 13 11 10 30 30 H 1.09002 * 109.47384 * 145.87139 * 14 9 7 31 31 H 1.09000 * 109.47526 * 25.87163 * 14 9 7 32 32 H 1.09005 * 109.68265 * 50.66673 * 17 15 14 33 33 H 1.09001 * 109.70954 * 290.14102 * 17 15 14 34 34 H 1.09000 * 109.24951 * 290.81160 * 18 17 15 35 35 H 1.08997 * 109.25565 * 171.38532 * 18 17 15 36 36 H 1.08008 * 119.72693 * 359.65344 * 20 19 18 37 37 H 1.07998 * 120.11125 * 179.91818 * 21 20 19 38 38 H 1.08007 * 120.10845 * 180.11586 * 22 21 20 39 39 H 1.08002 * 119.72582 * 180.02562 * 23 22 21 40 40 H 1.09001 * 109.39862 * 222.18283 * 25 24 19 41 41 H 1.09001 * 109.00487 * 102.77704 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4478 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0279 -1.2381 0.3605 9 7 1.4047 -2.3426 -0.4555 10 6 0.1282 -2.2588 -1.1696 11 6 -1.0043 -2.4923 -0.2032 12 8 -0.7692 -2.7107 0.9616 13 8 -2.2742 -2.4575 -0.6366 14 6 2.0332 -3.6464 -0.2290 15 6 2.8794 -4.0229 -1.4469 16 1 2.2663 -3.9806 -2.3471 17 6 3.4386 -5.4394 -1.2690 18 6 4.0712 -5.8771 -2.5884 19 6 5.0337 -4.8313 -3.0871 20 6 5.9609 -5.2115 -4.0490 21 6 6.8645 -4.2985 -4.5514 22 6 6.8471 -2.9933 -4.0954 23 6 5.9283 -2.6141 -3.1391 24 6 5.0234 -3.5344 -2.6253 25 6 4.0531 -3.0545 -1.5779 26 1 -0.4849 0.8401 -0.0004 27 1 0.0263 -1.2700 -1.6168 28 1 0.0997 -3.0164 -1.9527 29 1 -2.9667 -2.6136 0.0202 30 1 1.2610 -4.4003 -0.0760 31 1 2.6701 -3.5943 0.6540 32 1 2.6311 -6.1224 -1.0047 33 1 4.1928 -5.4408 -0.4821 34 1 3.2872 -6.0270 -3.3306 35 1 4.6060 -6.8147 -2.4371 36 1 5.9743 -6.2306 -4.4067 37 1 7.5832 -4.6021 -5.2981 38 1 7.5509 -2.2734 -4.4863 39 1 5.9151 -1.5943 -2.7838 40 1 3.6774 -2.0699 -1.8563 41 1 4.5700 -2.9845 -0.6207 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610622479.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:02 Heat of formation + Delta-G solvation = -75.496461 kcal Electronic energy + Delta-G solvation = -23409.926184 eV Core-core repulsion = 20060.807930 eV Total energy + Delta-G solvation = -3349.118254 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.94318 -40.51938 -38.24643 -36.66834 -36.08372 -33.67474 -32.99674 -31.36578 -29.89587 -28.91193 -27.27795 -24.69947 -23.79043 -22.92632 -22.54931 -21.52209 -20.03122 -18.78359 -18.47518 -17.28333 -17.09367 -16.85645 -16.41815 -16.00340 -15.91789 -15.40447 -15.21178 -15.12843 -14.56587 -14.31885 -14.10801 -13.67492 -13.67092 -13.23699 -13.15492 -12.94183 -12.71147 -12.57695 -12.37862 -12.18308 -12.13776 -12.04511 -11.95041 -11.78171 -11.52257 -11.36357 -11.03480 -11.01223 -10.48599 -9.55722 -9.32376 -8.95528 -7.92876 -5.21515 0.56159 0.57778 1.47494 1.49853 1.56705 1.98643 2.48760 2.78197 2.94635 3.26650 3.58511 3.84969 3.90557 4.10891 4.19589 4.26538 4.34312 4.41696 4.61076 4.63830 4.66930 4.70211 4.79143 4.92697 4.95246 5.05780 5.09087 5.18457 5.22121 5.23390 5.26471 5.28378 5.40084 5.54012 5.63522 5.67533 5.70015 5.74310 5.94185 6.12100 6.24811 6.25571 7.05987 7.59284 7.83346 8.20386 9.16188 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016113 B = 0.005406 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.300828 B = 5178.449357 C = 6476.870843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.055 4.055 3 Si 0.962 3.038 4 H -0.283 1.283 5 H -0.304 1.304 6 H -0.274 1.274 7 C -0.239 4.239 8 H 0.081 0.919 9 N -0.578 5.578 10 C 0.184 3.816 11 C 0.480 3.520 12 O -0.563 6.563 13 O -0.533 6.533 14 C 0.155 3.845 15 C -0.089 4.089 16 H 0.062 0.938 17 C -0.109 4.109 18 C -0.073 4.073 19 C -0.090 4.090 20 C -0.127 4.127 21 C -0.131 4.131 22 C -0.131 4.131 23 C -0.141 4.141 24 C -0.086 4.086 25 C -0.060 4.060 26 H 0.248 0.752 27 H 0.102 0.898 28 H 0.081 0.919 29 H 0.400 0.600 30 H 0.038 0.962 31 H 0.040 0.960 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.136 0.864 39 H 0.114 0.886 40 H 0.063 0.937 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.971 -11.250 -9.573 17.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.249 4.249 3 Si 0.791 3.209 4 H -0.210 1.210 5 H -0.232 1.232 6 H -0.199 1.199 7 C -0.368 4.368 8 H 0.099 0.901 9 N -0.298 5.298 10 C 0.054 3.946 11 C 0.323 3.677 12 O -0.453 6.453 13 O -0.344 6.344 14 C 0.029 3.971 15 C -0.110 4.110 16 H 0.081 0.919 17 C -0.147 4.147 18 C -0.110 4.110 19 C -0.090 4.090 20 C -0.145 4.145 21 C -0.149 4.149 22 C -0.149 4.149 23 C -0.159 4.159 24 C -0.086 4.086 25 C -0.097 4.097 26 H 0.058 0.942 27 H 0.120 0.880 28 H 0.099 0.901 29 H 0.258 0.742 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.154 0.846 39 H 0.132 0.868 40 H 0.082 0.918 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.289 -11.113 -9.521 17.333 hybrid contribution -0.508 1.470 1.084 1.895 sum 8.781 -9.643 -8.438 15.534 Atomic orbital electron populations 1.70048 1.06223 1.25554 1.56484 1.25390 0.95920 1.00879 1.02717 0.85326 0.77942 0.80086 0.77503 1.20979 1.23192 1.19856 1.19547 0.95719 0.85823 1.35730 0.90134 1.44178 1.18921 1.02950 1.63737 1.20490 0.80803 1.02794 0.90482 1.25688 0.83262 0.68679 0.90116 1.90483 1.85176 1.48016 1.21609 1.84577 1.17990 1.84887 1.46964 1.20979 0.94659 0.85777 0.95635 1.21541 0.95763 0.94803 0.98882 0.91932 1.21532 1.00238 0.95403 0.97533 1.20465 0.97159 0.96521 0.96841 1.19909 0.97783 0.93956 0.97316 1.21441 0.95361 1.00738 0.96922 1.21356 0.99625 0.93275 1.00640 1.21301 0.98909 0.97323 0.97372 1.21368 0.96620 0.99489 0.98443 1.19938 0.96949 0.93795 0.97888 1.20308 0.93938 0.99353 0.96132 0.94218 0.88002 0.90122 0.74169 0.94342 0.94105 0.90448 0.92119 0.90091 0.88993 0.84003 0.83763 0.84585 0.86812 0.91811 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.24 9.37 21.65 0.20 -53.04 16 2 C -0.06 -2.98 4.92 84.86 0.42 -2.57 16 3 Si 0.96 44.53 29.61 68.60 2.03 46.57 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.24 -12.43 8.30 84.03 0.70 -11.73 16 8 H 0.08 4.13 7.79 -2.91 -0.02 4.10 16 9 N -0.58 -27.28 1.88 -706.33 -1.33 -28.61 16 10 C 0.18 8.46 5.51 85.63 0.47 8.93 16 11 C 0.48 23.00 6.69 71.24 0.48 23.48 16 12 O -0.56 -30.99 17.13 21.98 0.38 -30.61 16 13 O -0.53 -21.22 13.42 -51.38 -0.69 -21.91 16 14 C 0.15 6.10 5.11 86.38 0.44 6.54 16 15 C -0.09 -2.86 2.41 -10.77 -0.03 -2.89 16 16 H 0.06 2.06 8.10 -2.39 -0.02 2.04 16 17 C -0.11 -2.72 5.28 30.61 0.16 -2.56 16 18 C -0.07 -1.56 5.67 29.73 0.17 -1.39 16 19 C -0.09 -2.27 5.74 -19.86 -0.11 -2.39 16 20 C -0.13 -2.69 9.61 22.36 0.21 -2.48 16 21 C -0.13 -2.68 10.05 22.20 0.22 -2.46 16 22 C -0.13 -3.05 10.05 22.20 0.22 -2.82 16 23 C -0.14 -4.00 9.61 22.36 0.21 -3.79 16 24 C -0.09 -2.56 5.74 -19.86 -0.11 -2.67 16 25 C -0.06 -2.04 4.25 29.73 0.13 -1.91 16 26 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 27 H 0.10 5.19 6.01 -2.39 -0.01 5.17 16 28 H 0.08 3.13 8.11 -2.39 -0.02 3.11 16 29 H 0.40 12.46 9.10 -74.06 -0.67 11.78 16 30 H 0.04 1.49 8.10 -2.39 -0.02 1.47 16 31 H 0.04 1.68 7.97 -2.39 -0.02 1.66 16 32 H 0.08 1.74 8.12 -2.38 -0.02 1.72 16 33 H 0.06 1.53 8.10 -2.39 -0.02 1.52 16 34 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.09 1.55 8.12 -2.39 -0.02 1.53 16 36 H 0.14 2.20 8.05 -2.91 -0.02 2.17 16 37 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 38 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 39 H 0.11 3.23 8.05 -2.91 -0.02 3.20 16 40 H 0.06 2.50 7.18 -2.39 -0.02 2.48 16 41 H 0.06 2.01 8.09 -2.39 -0.02 1.99 16 Total: -1.00 -66.96 335.16 4.53 -62.43 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 0.35 Total: 25.86 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 3.58 Total: -0.69 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -1.13 Total: -81.65 kcal Atomic # 8 Polarization: -52.21 SS G_CDS: -0.31 Total: -52.52 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.57 kcal Total: -66.96 4.53 -62.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610622479.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.064 kcal (2) G-P(sol) polarization free energy of solvation -66.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds