Wall clock time and date at job start Tue Mar 31 2020 06:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99836 * 2 1 4 4 H 1.48500 * 109.46899 * 264.89400 * 3 2 1 5 5 H 1.48492 * 109.47347 * 24.89728 * 3 2 1 6 6 H 1.48505 * 109.47224 * 144.89760 * 3 2 1 7 7 C 1.38815 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00165 * 204.76713 * 7 2 1 9 9 N 1.36938 * 119.99893 * 24.77020 * 7 2 1 10 10 C 1.46504 * 119.99838 * 8.57750 * 9 7 2 11 11 C 1.50699 * 109.47186 * 270.23205 * 10 9 7 12 12 O 1.20830 * 119.99923 * 0.02562 * 11 10 9 13 13 O 1.34226 * 120.00542 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00006 * 188.57641 * 9 7 2 15 15 C 1.52997 * 109.46894 * 90.00050 * 14 9 7 16 16 H 1.09002 * 109.68377 * 54.47806 * 15 14 9 17 17 C 1.53337 * 109.68369 * 174.99776 * 15 14 9 18 18 C 1.52735 * 108.37134 * 189.68098 * 17 15 14 19 19 C 1.50627 * 110.55597 * 308.94381 * 18 17 15 20 20 C 1.38988 * 117.69353 * 197.49549 * 19 18 17 21 21 C 1.37925 * 120.53156 * 180.23625 * 20 19 18 22 22 C 1.38266 * 119.76833 * 359.97438 * 21 20 19 23 23 C 1.37932 * 119.77105 * 359.89142 * 22 21 20 24 24 C 1.37586 * 122.62495 * 17.53205 * 19 18 17 25 25 C 1.50634 * 122.55028 * 359.64668 * 24 19 18 26 26 H 0.96998 * 119.99890 * 0.02562 * 1 2 3 27 27 H 1.08992 * 109.47566 * 30.23285 * 10 9 7 28 28 H 1.09002 * 109.46768 * 150.23840 * 10 9 7 29 29 H 0.96699 * 117.00493 * 180.02562 * 13 11 10 30 30 H 1.09000 * 109.47298 * 330.00011 * 14 9 7 31 31 H 1.09007 * 109.46925 * 209.99862 * 14 9 7 32 32 H 1.09001 * 109.68106 * 69.96277 * 17 15 14 33 33 H 1.08991 * 109.68293 * 309.40896 * 17 15 14 34 34 H 1.08999 * 109.24968 * 69.21741 * 18 17 15 35 35 H 1.09006 * 109.24782 * 188.67870 * 18 17 15 36 36 H 1.07999 * 119.74597 * 0.18878 * 20 19 18 37 37 H 1.08001 * 120.11951 * 180.02562 * 21 20 19 38 38 H 1.08005 * 120.11244 * 179.87099 * 22 21 20 39 39 H 1.07999 * 119.72350 * 180.02562 * 23 22 21 40 40 H 1.08993 * 109.25515 * 257.23365 * 25 24 19 41 41 H 1.09000 * 109.22116 * 137.78563 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6056 1.9841 -1.3945 5 1 1.3979 2.6814 0.5894 6 1 3.4897 1.4738 0.8051 7 6 2.0103 -1.2022 0.0005 8 1 3.0158 -1.2450 0.3924 9 7 1.4201 -2.3337 -0.4958 10 6 0.1366 -2.2434 -1.1963 11 6 -0.9884 -2.3897 -0.2043 12 8 -0.7432 -2.5522 0.9676 13 8 -2.2629 -2.3384 -0.6224 14 6 2.0722 -3.6346 -0.3264 15 6 1.6039 -4.2732 0.9827 16 1 0.5151 -4.3216 0.9986 17 6 2.1855 -5.6867 1.1048 18 6 1.5141 -6.3830 2.2869 19 6 1.5806 -5.5174 3.5179 20 6 1.3616 -6.1260 4.7481 21 6 1.4039 -5.3879 5.9124 22 6 1.6667 -4.0316 5.8562 23 6 1.8870 -3.4266 4.6364 24 6 1.8457 -4.1684 3.4627 25 6 2.0995 -3.4447 2.1662 26 1 -0.4850 0.8400 -0.0004 27 1 0.0604 -1.2757 -1.6919 28 1 0.0714 -3.0383 -1.9393 29 1 -2.9501 -2.4368 0.0507 30 1 3.1533 -3.4982 -0.2978 31 1 1.8099 -4.2840 -1.1617 32 1 3.2605 -5.6279 1.2756 33 1 1.9887 -6.2450 0.1897 34 1 0.4705 -6.5805 2.0421 35 1 2.0221 -7.3272 2.4835 36 1 1.1559 -7.1853 4.7928 37 1 1.2331 -5.8677 6.8648 38 1 1.6990 -3.4478 6.7643 39 1 2.0926 -2.3672 4.5934 40 1 3.1693 -3.2666 2.0575 41 1 1.5757 -2.4889 2.1803 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610622480.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:07 Heat of formation + Delta-G solvation = -55.902856 kcal Electronic energy + Delta-G solvation = -24055.270536 eV Core-core repulsion = 20707.001924 eV Total energy + Delta-G solvation = -3348.268612 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.64179 -38.60899 -36.64159 -34.96824 -34.20358 -32.18429 -31.39585 -29.92621 -28.55925 -27.08651 -25.60854 -23.17182 -22.30676 -21.69848 -20.86919 -19.86614 -18.65088 -16.81966 -16.56740 -16.04463 -15.28885 -15.12592 -15.03936 -14.64134 -14.05956 -13.94610 -13.57076 -13.42409 -13.16773 -12.87929 -12.71520 -12.38389 -11.95165 -11.70997 -11.44622 -11.28350 -11.13461 -11.02736 -10.96996 -10.67962 -10.57229 -10.29359 -10.19716 -10.09892 -9.81601 -9.58265 -9.53721 -8.97279 -8.49308 -8.36519 -8.06233 -7.09365 -5.93054 -3.18213 1.73738 1.80169 3.36047 3.43710 3.44646 4.00380 4.14474 4.37279 4.62777 5.02873 5.14033 5.26857 5.27640 5.35378 5.38245 5.51981 5.58185 5.76625 5.80937 5.90258 6.02266 6.16017 6.26846 6.29247 6.37096 6.37660 6.40024 6.49421 6.57519 6.65651 6.66933 6.84378 6.93469 7.01775 7.10366 7.14151 7.30276 7.36180 7.52161 7.70006 7.97650 8.17122 9.03638 9.53034 9.74851 10.14744 11.18452 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015950 B = 0.006036 C = 0.005403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.029070 B = 4638.055173 C = 5180.863200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.001 4.001 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.281 1.281 7 C -0.244 4.244 8 H 0.081 0.919 9 N -0.569 5.569 10 C 0.189 3.811 11 C 0.477 3.523 12 O -0.509 6.509 13 O -0.547 6.547 14 C 0.150 3.850 15 C -0.106 4.106 16 H 0.079 0.921 17 C -0.117 4.117 18 C -0.075 4.075 19 C -0.082 4.082 20 C -0.127 4.127 21 C -0.137 4.137 22 C -0.127 4.127 23 C -0.120 4.120 24 C -0.050 4.050 25 C -0.065 4.065 26 H 0.257 0.743 27 H 0.112 0.888 28 H 0.049 0.951 29 H 0.378 0.622 30 H 0.052 0.948 31 H 0.042 0.958 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.119 0.881 40 H 0.059 0.941 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.617 -10.411 3.125 10.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.199 4.199 3 Si 0.735 3.265 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.099 0.901 9 N -0.288 5.288 10 C 0.060 3.940 11 C 0.316 3.684 12 O -0.395 6.395 13 O -0.357 6.357 14 C 0.024 3.976 15 C -0.126 4.126 16 H 0.097 0.903 17 C -0.156 4.156 18 C -0.112 4.112 19 C -0.082 4.082 20 C -0.145 4.145 21 C -0.155 4.155 22 C -0.145 4.145 23 C -0.138 4.138 24 C -0.050 4.050 25 C -0.101 4.101 26 H 0.067 0.933 27 H 0.129 0.871 28 H 0.067 0.933 29 H 0.233 0.767 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.137 0.863 40 H 0.078 0.922 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.952 -10.252 3.154 10.903 hybrid contribution -0.319 0.989 1.005 1.445 sum 1.633 -9.264 4.159 10.285 Atomic orbital electron populations 1.69811 1.05167 1.25731 1.54233 1.24710 0.95170 0.98268 1.01729 0.86250 0.79036 0.83506 0.77735 1.21440 1.22058 1.20669 1.19250 0.96791 0.85055 1.36162 0.90088 1.44204 1.18130 1.02817 1.63693 1.20389 0.81241 1.02069 0.90316 1.25301 0.81796 0.69903 0.91363 1.90492 1.83755 1.45628 1.19628 1.84640 1.18622 1.86745 1.45715 1.21042 0.96542 0.86350 0.93691 1.21884 1.01547 0.92212 0.96989 0.90254 1.21653 0.99757 0.97368 0.96780 1.20412 1.00969 0.96926 0.92883 1.19641 1.00288 0.93739 0.94559 1.21082 1.01707 0.99291 0.92379 1.20894 1.02504 0.94439 0.97713 1.20992 1.01113 0.94915 0.97515 1.21254 1.00400 0.99968 0.92166 1.20014 0.96131 0.92687 0.96189 1.20461 1.00270 1.00229 0.89170 0.93293 0.87054 0.93312 0.76718 0.92948 0.94009 0.92327 0.92192 0.91273 0.91766 0.86965 0.86902 0.86778 0.86304 0.92237 0.87650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.66 8.93 55.49 0.50 -24.17 16 2 C 0.00 -0.04 4.90 -17.43 -0.09 -0.12 16 3 Si 0.90 21.07 29.62 -169.99 -5.04 16.04 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.24 -6.12 7.95 -15.06 -0.12 -6.24 16 8 H 0.08 2.02 7.93 -52.49 -0.42 1.60 16 9 N -0.57 -12.95 1.99 -174.61 -0.35 -13.30 16 10 C 0.19 4.25 5.59 -5.19 -0.03 4.22 16 11 C 0.48 11.11 6.25 36.01 0.23 11.33 16 12 O -0.51 -13.17 13.93 -18.75 -0.26 -13.44 16 13 O -0.55 -11.13 13.42 -39.25 -0.53 -11.66 16 14 C 0.15 2.86 5.21 -4.04 -0.02 2.84 16 15 C -0.11 -1.96 1.87 -90.58 -0.17 -2.13 16 16 H 0.08 1.71 5.96 -51.93 -0.31 1.40 16 17 C -0.12 -1.76 5.29 -26.69 -0.14 -1.90 16 18 C -0.07 -1.09 5.67 -28.05 -0.16 -1.25 16 19 C -0.08 -1.37 5.74 -104.62 -0.60 -1.97 16 20 C -0.13 -1.88 9.61 -39.42 -0.38 -2.26 16 21 C -0.14 -1.97 10.05 -39.69 -0.40 -2.37 16 22 C -0.13 -1.95 10.05 -39.68 -0.40 -2.35 16 23 C -0.12 -2.12 9.61 -39.45 -0.38 -2.50 16 24 C -0.05 -0.93 5.73 -104.64 -0.60 -1.53 16 25 C -0.06 -1.29 4.26 -28.05 -0.12 -1.41 16 26 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.11 2.73 6.31 -51.93 -0.33 2.40 16 28 H 0.05 0.94 7.89 -51.93 -0.41 0.53 16 29 H 0.38 6.26 9.10 45.56 0.41 6.68 16 30 H 0.05 0.97 7.99 -51.93 -0.41 0.55 16 31 H 0.04 0.71 7.89 -51.92 -0.41 0.30 16 32 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 33 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 36 H 0.11 1.38 8.05 -52.49 -0.42 0.96 16 37 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 39 H 0.12 2.07 8.05 -52.49 -0.42 1.65 16 40 H 0.06 1.15 8.09 -51.93 -0.42 0.73 16 41 H 0.11 2.57 6.54 -51.93 -0.34 2.23 16 LS Contribution 327.72 15.07 4.94 4.94 Total: -1.00 -29.61 327.72 -9.26 -38.86 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -5.15 Total: 10.36 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -3.38 Total: -7.64 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.15 Total: -37.47 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.79 Total: -25.09 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.04 Total: 16.04 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.61 -9.26 -38.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610622480.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.039 kcal (2) G-P(sol) polarization free energy of solvation -29.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds