Wall clock time and date at job start Tue Mar 31 2020 06:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99836 * 2 1 4 4 H 1.48500 * 109.46899 * 264.89400 * 3 2 1 5 5 H 1.48492 * 109.47347 * 24.89728 * 3 2 1 6 6 H 1.48505 * 109.47224 * 144.89760 * 3 2 1 7 7 C 1.38815 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00165 * 204.76713 * 7 2 1 9 9 N 1.36938 * 119.99893 * 24.77020 * 7 2 1 10 10 C 1.46504 * 119.99838 * 8.57750 * 9 7 2 11 11 C 1.50699 * 109.47186 * 270.23205 * 10 9 7 12 12 O 1.20830 * 119.99923 * 0.02562 * 11 10 9 13 13 O 1.34226 * 120.00542 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00006 * 188.57641 * 9 7 2 15 15 C 1.52997 * 109.46894 * 90.00050 * 14 9 7 16 16 H 1.09002 * 109.68377 * 54.47806 * 15 14 9 17 17 C 1.53337 * 109.68369 * 174.99776 * 15 14 9 18 18 C 1.52735 * 108.37134 * 189.68098 * 17 15 14 19 19 C 1.50627 * 110.55597 * 308.94381 * 18 17 15 20 20 C 1.38988 * 117.69353 * 197.49549 * 19 18 17 21 21 C 1.37925 * 120.53156 * 180.23625 * 20 19 18 22 22 C 1.38266 * 119.76833 * 359.97438 * 21 20 19 23 23 C 1.37932 * 119.77105 * 359.89142 * 22 21 20 24 24 C 1.37586 * 122.62495 * 17.53205 * 19 18 17 25 25 C 1.50634 * 122.55028 * 359.64668 * 24 19 18 26 26 H 0.96998 * 119.99890 * 0.02562 * 1 2 3 27 27 H 1.08992 * 109.47566 * 30.23285 * 10 9 7 28 28 H 1.09002 * 109.46768 * 150.23840 * 10 9 7 29 29 H 0.96699 * 117.00493 * 180.02562 * 13 11 10 30 30 H 1.09000 * 109.47298 * 330.00011 * 14 9 7 31 31 H 1.09007 * 109.46925 * 209.99862 * 14 9 7 32 32 H 1.09001 * 109.68106 * 69.96277 * 17 15 14 33 33 H 1.08991 * 109.68293 * 309.40896 * 17 15 14 34 34 H 1.08999 * 109.24968 * 69.21741 * 18 17 15 35 35 H 1.09006 * 109.24782 * 188.67870 * 18 17 15 36 36 H 1.07999 * 119.74597 * 0.18878 * 20 19 18 37 37 H 1.08001 * 120.11951 * 180.02562 * 21 20 19 38 38 H 1.08005 * 120.11244 * 179.87099 * 22 21 20 39 39 H 1.07999 * 119.72350 * 180.02562 * 23 22 21 40 40 H 1.08993 * 109.25515 * 257.23365 * 25 24 19 41 41 H 1.09000 * 109.22116 * 137.78563 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6056 1.9841 -1.3945 5 1 1.3979 2.6814 0.5894 6 1 3.4897 1.4738 0.8051 7 6 2.0103 -1.2022 0.0005 8 1 3.0158 -1.2450 0.3924 9 7 1.4201 -2.3337 -0.4958 10 6 0.1366 -2.2434 -1.1963 11 6 -0.9884 -2.3897 -0.2043 12 8 -0.7432 -2.5522 0.9676 13 8 -2.2629 -2.3384 -0.6224 14 6 2.0722 -3.6346 -0.3264 15 6 1.6039 -4.2732 0.9827 16 1 0.5151 -4.3216 0.9986 17 6 2.1855 -5.6867 1.1048 18 6 1.5141 -6.3830 2.2869 19 6 1.5806 -5.5174 3.5179 20 6 1.3616 -6.1260 4.7481 21 6 1.4039 -5.3879 5.9124 22 6 1.6667 -4.0316 5.8562 23 6 1.8870 -3.4266 4.6364 24 6 1.8457 -4.1684 3.4627 25 6 2.0995 -3.4447 2.1662 26 1 -0.4850 0.8400 -0.0004 27 1 0.0604 -1.2757 -1.6919 28 1 0.0714 -3.0383 -1.9393 29 1 -2.9501 -2.4368 0.0507 30 1 3.1533 -3.4982 -0.2978 31 1 1.8099 -4.2840 -1.1617 32 1 3.2605 -5.6279 1.2756 33 1 1.9887 -6.2450 0.1897 34 1 0.4705 -6.5805 2.0421 35 1 2.0221 -7.3272 2.4835 36 1 1.1559 -7.1853 4.7928 37 1 1.2331 -5.8677 6.8648 38 1 1.6990 -3.4478 6.7643 39 1 2.0926 -2.3672 4.5934 40 1 3.1693 -3.2666 2.0575 41 1 1.5757 -2.4889 2.1803 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610622480.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:06 Heat of formation + Delta-G solvation = -71.521301 kcal Electronic energy + Delta-G solvation = -24055.947802 eV Core-core repulsion = 20707.001924 eV Total energy + Delta-G solvation = -3348.945878 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.96730 -40.35791 -38.17354 -36.52394 -35.99831 -33.63771 -33.01051 -31.37502 -29.89863 -28.83566 -27.24914 -24.68484 -23.77045 -22.96269 -22.39191 -21.55260 -20.02462 -18.68550 -18.35440 -17.31275 -17.07310 -16.78230 -16.42228 -15.97762 -15.88743 -15.32832 -15.12840 -15.10136 -14.54342 -14.30241 -14.08174 -13.76459 -13.50187 -13.26374 -13.07813 -12.83657 -12.74361 -12.59922 -12.37409 -12.21050 -12.15370 -12.01398 -11.91882 -11.77525 -11.38612 -11.15411 -10.99338 -10.76853 -10.42551 -9.59986 -9.34589 -8.94968 -7.91698 -5.15298 0.50938 0.55433 1.47556 1.50211 1.56052 2.17431 2.51889 2.89127 2.90537 3.30839 3.61297 3.87258 3.92388 4.15817 4.16815 4.23283 4.36301 4.41904 4.61351 4.63710 4.69315 4.72250 4.80285 4.96062 4.98993 5.09265 5.09660 5.17164 5.19267 5.25655 5.28639 5.30211 5.42065 5.61097 5.64013 5.68006 5.72924 5.82344 5.94776 6.22595 6.25981 6.28871 7.09286 7.71840 7.91802 8.23327 9.17890 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015950 B = 0.006036 C = 0.005403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.029070 B = 4638.055173 C = 5180.863200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.052 4.052 3 Si 0.958 3.042 4 H -0.282 1.282 5 H -0.307 1.307 6 H -0.278 1.278 7 C -0.233 4.233 8 H 0.077 0.923 9 N -0.579 5.579 10 C 0.188 3.812 11 C 0.478 3.522 12 O -0.541 6.541 13 O -0.541 6.541 14 C 0.145 3.855 15 C -0.096 4.096 16 H 0.050 0.950 17 C -0.110 4.110 18 C -0.074 4.074 19 C -0.093 4.093 20 C -0.127 4.127 21 C -0.132 4.132 22 C -0.131 4.131 23 C -0.147 4.147 24 C -0.083 4.083 25 C -0.050 4.050 26 H 0.246 0.754 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.395 0.605 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.136 0.864 39 H 0.102 0.898 40 H 0.052 0.948 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.089 -13.251 3.533 13.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.246 4.246 3 Si 0.788 3.212 4 H -0.209 1.209 5 H -0.235 1.235 6 H -0.204 1.204 7 C -0.363 4.363 8 H 0.095 0.905 9 N -0.299 5.299 10 C 0.058 3.942 11 C 0.319 3.681 12 O -0.429 6.429 13 O -0.352 6.352 14 C 0.020 3.980 15 C -0.117 4.117 16 H 0.068 0.932 17 C -0.148 4.148 18 C -0.110 4.110 19 C -0.093 4.093 20 C -0.144 4.144 21 C -0.150 4.150 22 C -0.149 4.149 23 C -0.165 4.165 24 C -0.083 4.083 25 C -0.087 4.087 26 H 0.055 0.945 27 H 0.107 0.893 28 H 0.102 0.898 29 H 0.253 0.747 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.114 0.886 36 H 0.164 0.836 37 H 0.167 0.833 38 H 0.154 0.846 39 H 0.120 0.880 40 H 0.070 0.930 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.430 -13.115 3.545 13.802 hybrid contribution -0.500 1.806 0.943 2.098 sum 1.930 -11.309 4.488 12.319 Atomic orbital electron populations 1.69958 1.06036 1.25166 1.56444 1.25275 0.95797 1.00585 1.02977 0.85405 0.77756 0.80389 0.77638 1.20876 1.23483 1.20364 1.19406 0.96522 0.86060 1.34330 0.90508 1.44363 1.18434 1.03679 1.63385 1.20393 0.80992 1.02134 0.90636 1.25431 0.82668 0.69050 0.90973 1.90497 1.84399 1.47107 1.20876 1.84568 1.18248 1.86211 1.46186 1.21262 0.96504 0.85228 0.95021 1.21686 0.99713 0.94482 0.95829 0.93159 1.21596 0.99857 0.94890 0.98411 1.20472 1.01317 0.97667 0.91577 1.19956 0.99795 0.93029 0.96530 1.21491 1.00368 1.00972 0.91618 1.21352 1.00516 0.93813 0.99300 1.21282 1.00388 0.96023 0.97219 1.21331 1.02162 0.99536 0.93499 1.20027 0.98722 0.94097 0.95451 1.20161 0.98923 0.98291 0.91333 0.94471 0.89281 0.89767 0.74713 0.92492 0.91243 0.91707 0.89753 0.91245 0.88555 0.83641 0.83330 0.84587 0.87998 0.92967 0.93187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.45 8.93 21.65 0.19 -52.25 16 2 C -0.05 -2.81 4.90 84.86 0.42 -2.39 16 3 Si 0.96 44.71 29.62 68.60 2.03 46.74 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 5 H -0.31 -14.91 7.11 99.48 0.71 -14.20 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.23 -12.03 7.95 84.03 0.67 -11.36 16 8 H 0.08 3.94 7.93 -2.91 -0.02 3.92 16 9 N -0.58 -26.61 1.99 -706.34 -1.41 -28.02 16 10 C 0.19 8.44 5.59 85.63 0.48 8.92 16 11 C 0.48 22.52 6.25 71.24 0.45 22.96 16 12 O -0.54 -28.82 13.93 21.95 0.31 -28.52 16 13 O -0.54 -21.85 13.42 -51.38 -0.69 -22.54 16 14 C 0.15 5.41 5.21 86.38 0.45 5.86 16 15 C -0.10 -3.57 1.87 -10.77 -0.02 -3.59 16 16 H 0.05 2.18 5.96 -2.39 -0.01 2.17 16 17 C -0.11 -3.02 5.29 30.62 0.16 -2.86 16 18 C -0.07 -1.92 5.67 29.74 0.17 -1.75 16 19 C -0.09 -2.94 5.74 -19.86 -0.11 -3.05 16 20 C -0.13 -3.34 9.61 22.38 0.22 -3.12 16 21 C -0.13 -3.37 10.05 22.20 0.22 -3.15 16 22 C -0.13 -3.88 10.05 22.20 0.22 -3.65 16 23 C -0.15 -5.38 9.61 22.36 0.21 -5.16 16 24 C -0.08 -3.13 5.73 -19.88 -0.11 -3.25 16 25 C -0.05 -2.08 4.26 29.74 0.13 -1.95 16 26 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 27 H 0.09 4.44 6.31 -2.39 -0.02 4.42 16 28 H 0.08 3.12 7.89 -2.39 -0.02 3.10 16 29 H 0.40 12.95 9.10 -74.06 -0.67 12.27 16 30 H 0.06 2.06 7.99 -2.39 -0.02 2.04 16 31 H 0.07 2.20 7.89 -2.38 -0.02 2.18 16 32 H 0.06 1.72 8.10 -2.39 -0.02 1.70 16 33 H 0.08 1.93 8.12 -2.39 -0.02 1.91 16 34 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.10 1.92 8.13 -2.38 -0.02 1.90 16 36 H 0.15 2.84 8.05 -2.91 -0.02 2.82 16 37 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 38 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 39 H 0.10 3.88 8.05 -2.91 -0.02 3.86 16 40 H 0.05 2.13 8.09 -2.39 -0.02 2.11 16 41 H 0.05 2.61 6.54 -2.39 -0.02 2.60 16 Total: -1.00 -66.76 327.72 4.34 -62.42 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: 0.36 Total: 29.69 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: 3.54 Total: -7.53 kcal Atomic # 7 Polarization: -79.05 SS G_CDS: -1.21 Total: -80.27 kcal Atomic # 8 Polarization: -50.67 SS G_CDS: -0.38 Total: -51.05 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -66.76 4.34 -62.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610622480.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.100 kcal (2) G-P(sol) polarization free energy of solvation -66.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds