Wall clock time and date at job start Tue Mar 31 2020 05:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34130 * 125.99085 * 2 1 4 4 C 1.30494 * 109.25928 * 180.02562 * 3 2 1 5 5 N 1.35045 * 108.69980 * 359.76948 * 4 3 2 6 6 H 0.96998 * 126.40251 * 180.27367 * 5 4 3 7 7 C 1.34666 * 125.99274 * 180.02562 * 2 1 3 8 8 C 1.50706 * 126.58683 * 359.96159 * 7 2 1 9 9 C 1.50698 * 109.47294 * 85.00429 * 8 7 2 10 10 O 1.21296 * 119.99939 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00035 * 180.02562 * 9 8 7 12 12 C 1.40161 * 119.99960 * 179.97438 * 11 9 8 13 13 C 1.40410 * 125.97439 * 359.70807 * 12 11 9 14 14 C 1.35237 * 107.86631 * 179.82854 * 13 12 11 15 15 N 1.34966 * 107.85993 * 0.43606 * 14 13 12 16 16 C 1.46500 * 125.97314 * 179.68811 * 15 14 13 17 17 C 1.50704 * 109.47154 * 125.01508 * 16 15 14 18 18 H 1.07999 * 119.99573 * 359.97438 * 17 16 15 19 19 C 1.37868 * 120.00225 * 179.97438 * 17 16 15 20 20 N 1.31521 * 120.00075 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00116 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46954 * 90.00263 * 21 19 17 23 23 H 1.48498 * 109.47159 * 209.99949 * 21 19 17 24 24 H 1.48498 * 109.47105 * 330.00034 * 21 19 17 25 25 N 1.31215 * 125.97160 * 180.02562 * 12 11 9 26 26 H 1.08995 * 109.46949 * 269.99450 * 1 2 3 27 27 H 1.08997 * 109.47025 * 29.99615 * 1 2 3 28 28 H 1.09002 * 109.46689 * 149.99362 * 1 2 3 29 29 H 1.07999 * 125.65302 * 180.02562 * 4 3 2 30 30 H 1.09001 * 109.46953 * 204.99871 * 8 7 2 31 31 H 1.09000 * 109.47318 * 324.99469 * 8 7 2 32 32 H 0.97002 * 119.99767 * 359.97438 * 11 9 8 33 33 H 1.08003 * 126.06439 * 359.97438 * 13 12 11 34 34 H 1.08006 * 126.06535 * 180.15588 * 14 13 12 35 35 H 1.09000 * 109.47257 * 245.01688 * 16 15 14 36 36 H 1.09002 * 109.47426 * 5.01755 * 16 15 14 37 37 H 0.97000 * 120.00043 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2953 1.0853 0.0000 4 6 3.5450 0.7096 -0.0006 5 7 3.5914 -0.6401 0.0042 6 1 4.3914 -1.1885 0.0087 7 6 2.2985 -1.0896 -0.0005 8 6 1.8473 -2.5275 -0.0003 9 6 1.5781 -2.9697 -1.4156 10 8 1.7365 -2.1935 -2.3340 11 7 1.1603 -4.2274 -1.6607 12 6 0.9094 -4.6385 -2.9769 13 6 1.0455 -3.8468 -4.1285 14 6 0.7141 -4.6073 -5.1965 15 7 0.3710 -5.8312 -4.7426 16 6 -0.0620 -6.9637 -5.5649 17 6 0.8140 -8.1562 -5.2788 18 1 1.6135 -8.0780 -4.5570 19 6 0.5946 -9.3468 -5.9385 20 7 -0.3787 -9.4417 -6.8179 21 14 1.6809 -10.8246 -5.5844 22 1 1.0921 -11.6174 -4.4753 23 1 1.7773 -11.6710 -6.8008 24 1 3.0369 -10.3605 -5.1956 25 7 0.5006 -5.8289 -3.3479 26 1 -0.3633 -0.0001 1.0276 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5140 29 1 4.4005 1.3688 -0.0003 30 1 2.6274 -3.1530 0.4335 31 1 0.9357 -2.6222 0.5897 32 1 1.0332 -4.8481 -0.9261 33 1 1.3613 -2.8143 -4.1565 34 1 0.7185 -4.2900 -6.2289 35 1 -1.0977 -7.2088 -5.3294 36 1 0.0179 -6.6988 -6.6192 37 1 -0.5333 -10.2795 -7.2817 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001628448756.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:24 Heat of formation + Delta-G solvation = 100.462312 kcal Electronic energy + Delta-G solvation = -21709.067430 eV Core-core repulsion = 18296.331728 eV Total energy + Delta-G solvation = -3412.735702 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.29196 -40.68062 -39.21064 -34.79731 -33.43915 -33.26099 -32.91096 -31.00066 -29.39410 -29.06792 -26.79816 -25.93231 -23.22327 -22.12039 -21.56154 -20.41620 -19.75075 -19.52040 -17.94645 -17.06302 -16.64282 -16.53696 -15.71114 -15.34542 -15.13973 -14.65917 -14.31725 -14.02378 -13.79079 -13.48751 -12.96471 -12.88556 -12.79840 -12.59847 -12.34321 -12.22981 -12.21806 -11.77894 -11.07195 -10.92022 -10.46972 -10.29162 -10.12452 -10.09227 -9.98692 -9.63806 -9.53016 -8.66505 -8.38414 -8.17340 -7.51259 -6.27367 -4.32688 1.76370 2.26037 2.71493 2.88054 2.96371 3.04251 3.21046 3.26938 3.31716 3.67153 3.87268 4.29033 4.30576 4.50904 4.68725 4.76270 5.06963 5.07804 5.13438 5.18264 5.52435 5.62230 5.76696 5.81553 5.90486 6.00096 6.22037 6.45417 6.55912 6.61804 6.82938 7.02198 7.19372 7.36130 7.52971 7.67652 7.85474 7.92023 8.00739 8.19666 8.59320 8.76665 9.33060 10.81413 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.036014 B = 0.002871 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.294416 B = 9749.964898 C =10036.779360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.024 3.976 3 N -0.493 5.493 4 C 0.190 3.810 5 N -0.562 5.562 6 H 0.418 0.582 7 C -0.009 4.009 8 C -0.060 4.060 9 C 0.515 3.485 10 O -0.504 6.504 11 N -0.631 5.631 12 C 0.256 3.744 13 C -0.287 4.287 14 C 0.052 3.948 15 N -0.318 5.318 16 C 0.258 3.742 17 C -0.529 4.529 18 H 0.068 0.932 19 C 0.062 3.938 20 N -0.895 5.895 21 Si 0.908 3.092 22 H -0.277 1.277 23 H -0.284 1.284 24 H -0.273 1.273 25 N -0.304 5.304 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.208 0.792 30 H 0.104 0.896 31 H 0.120 0.880 32 H 0.411 0.589 33 H 0.159 0.841 34 H 0.168 0.832 35 H 0.045 0.955 36 H 0.057 0.943 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.778 14.876 14.505 21.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.105 4.105 3 N -0.213 5.213 4 C -0.094 4.094 5 N -0.165 5.165 6 H 0.256 0.744 7 C -0.124 4.124 8 C -0.101 4.101 9 C 0.300 3.700 10 O -0.376 6.376 11 N -0.279 5.279 12 C 0.003 3.997 13 C -0.319 4.319 14 C -0.099 4.099 15 N -0.100 5.100 16 C 0.140 3.860 17 C -0.567 4.567 18 H 0.087 0.913 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.735 3.265 22 H -0.203 1.203 23 H -0.210 1.210 24 H -0.198 1.198 25 N -0.135 5.135 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.224 0.776 30 H 0.122 0.878 31 H 0.138 0.862 32 H 0.246 0.754 33 H 0.176 0.824 34 H 0.185 0.815 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.113 14.896 14.021 21.086 hybrid contribution 1.528 -1.553 0.076 2.180 sum 6.641 13.343 14.097 20.515 Atomic orbital electron populations 1.20059 0.87773 1.03089 1.01846 1.20441 0.96392 0.87750 1.05937 1.70175 1.00580 1.30663 1.19852 1.24867 0.97354 0.81828 1.05355 1.43120 1.07924 1.08738 1.56756 0.74401 1.20078 0.84187 0.95162 1.12993 1.19964 1.04381 0.91098 0.94669 1.20487 0.77317 0.80901 0.91310 1.90693 1.49290 1.52245 1.45403 1.42457 1.66303 1.13318 1.05842 1.19104 1.02420 0.93078 0.85124 1.21513 1.18229 1.02713 0.89401 1.22570 1.00959 0.86355 0.99973 1.49088 1.47535 1.10517 1.02866 1.19757 0.96740 0.81084 0.88374 1.21246 1.16218 0.94849 1.24433 0.91336 1.24947 0.95596 0.98914 0.94623 1.69919 1.30294 1.27099 1.26005 0.86321 0.80615 0.81672 0.77846 1.20314 1.20957 1.19752 1.77324 1.26212 1.17177 0.92795 0.91449 0.90995 0.91387 0.77588 0.87813 0.86174 0.75389 0.82383 0.81495 0.93670 0.92513 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.13 36.01 0.36 -0.36 16 2 C 0.02 0.30 7.09 -82.85 -0.59 -0.29 16 3 N -0.49 -6.34 11.25 -10.87 -0.12 -6.46 16 4 C 0.19 1.78 13.04 -90.38 -1.18 0.60 16 5 N -0.56 -4.77 6.15 -10.30 -0.06 -4.83 16 6 H 0.42 2.22 8.96 -40.82 -0.37 1.86 16 7 C -0.01 -0.09 5.73 -81.60 -0.47 -0.56 16 8 C -0.06 -0.49 5.81 -29.03 -0.17 -0.66 16 9 C 0.52 6.68 7.79 -10.99 -0.09 6.60 16 10 O -0.50 -8.51 13.17 5.54 0.07 -8.43 16 11 N -0.63 -8.91 5.45 -11.13 -0.06 -8.97 16 12 C 0.26 4.96 8.11 -154.39 -1.25 3.71 16 13 C -0.29 -5.63 9.61 -39.83 -0.38 -6.01 16 14 C 0.05 1.02 11.44 -17.24 -0.20 0.83 16 15 N -0.32 -7.31 3.67 -62.56 -0.23 -7.54 16 16 C 0.26 6.49 6.26 -5.19 -0.03 6.46 16 17 C -0.53 -14.57 9.24 -34.44 -0.32 -14.89 16 18 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -25.14 13.29 55.43 0.74 -24.40 16 21 Si 0.91 21.11 29.54 -169.99 -5.02 16.09 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 N -0.30 -6.83 12.42 31.44 0.39 -6.44 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.69 7.89 -51.93 -0.41 0.28 16 29 H 0.21 1.06 8.06 -52.49 -0.42 0.63 16 30 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.12 0.71 8.03 -51.93 -0.42 0.29 16 32 H 0.41 4.47 8.82 -40.82 -0.36 4.11 16 33 H 0.16 3.05 5.92 -52.48 -0.31 2.74 16 34 H 0.17 2.72 8.06 -52.48 -0.42 2.30 16 35 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.40 8.07 -51.93 -0.42 0.99 16 37 H 0.27 7.08 8.31 -40.82 -0.34 6.75 16 LS Contribution 328.46 15.07 4.95 4.95 Total: -1.00 -35.99 328.46 -8.11 -44.10 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -4.36 Total: 4.93 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -4.40 Total: -2.98 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: 0.65 Total: -58.66 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.07 Total: -8.43 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.99 -8.11 -44.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001628448756.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.565 kcal (2) G-P(sol) polarization free energy of solvation -35.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds