Wall clock time and date at job start Tue Mar 31 2020 05:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34130 * 125.99085 * 2 1 4 4 C 1.30494 * 109.25928 * 180.02562 * 3 2 1 5 5 N 1.35045 * 108.69980 * 359.76948 * 4 3 2 6 6 H 0.96998 * 126.40251 * 180.27367 * 5 4 3 7 7 C 1.34666 * 125.99274 * 180.02562 * 2 1 3 8 8 C 1.50706 * 126.58683 * 359.96159 * 7 2 1 9 9 C 1.50698 * 109.47294 * 85.00429 * 8 7 2 10 10 O 1.21296 * 119.99939 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00035 * 180.02562 * 9 8 7 12 12 C 1.40161 * 119.99960 * 179.97438 * 11 9 8 13 13 C 1.40410 * 125.97439 * 359.70807 * 12 11 9 14 14 C 1.35237 * 107.86631 * 179.82854 * 13 12 11 15 15 N 1.34966 * 107.85993 * 0.43606 * 14 13 12 16 16 C 1.46500 * 125.97314 * 179.68811 * 15 14 13 17 17 C 1.50704 * 109.47154 * 125.01508 * 16 15 14 18 18 H 1.07999 * 119.99573 * 359.97438 * 17 16 15 19 19 C 1.37868 * 120.00225 * 179.97438 * 17 16 15 20 20 N 1.31521 * 120.00075 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00116 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46954 * 90.00263 * 21 19 17 23 23 H 1.48498 * 109.47159 * 209.99949 * 21 19 17 24 24 H 1.48498 * 109.47105 * 330.00034 * 21 19 17 25 25 N 1.31215 * 125.97160 * 180.02562 * 12 11 9 26 26 H 1.08995 * 109.46949 * 269.99450 * 1 2 3 27 27 H 1.08997 * 109.47025 * 29.99615 * 1 2 3 28 28 H 1.09002 * 109.46689 * 149.99362 * 1 2 3 29 29 H 1.07999 * 125.65302 * 180.02562 * 4 3 2 30 30 H 1.09001 * 109.46953 * 204.99871 * 8 7 2 31 31 H 1.09000 * 109.47318 * 324.99469 * 8 7 2 32 32 H 0.97002 * 119.99767 * 359.97438 * 11 9 8 33 33 H 1.08003 * 126.06439 * 359.97438 * 13 12 11 34 34 H 1.08006 * 126.06535 * 180.15588 * 14 13 12 35 35 H 1.09000 * 109.47257 * 245.01688 * 16 15 14 36 36 H 1.09002 * 109.47426 * 5.01755 * 16 15 14 37 37 H 0.97000 * 120.00043 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2953 1.0853 0.0000 4 6 3.5450 0.7096 -0.0006 5 7 3.5914 -0.6401 0.0042 6 1 4.3914 -1.1885 0.0087 7 6 2.2985 -1.0896 -0.0005 8 6 1.8473 -2.5275 -0.0003 9 6 1.5781 -2.9697 -1.4156 10 8 1.7365 -2.1935 -2.3340 11 7 1.1603 -4.2274 -1.6607 12 6 0.9094 -4.6385 -2.9769 13 6 1.0455 -3.8468 -4.1285 14 6 0.7141 -4.6073 -5.1965 15 7 0.3710 -5.8312 -4.7426 16 6 -0.0620 -6.9637 -5.5649 17 6 0.8140 -8.1562 -5.2788 18 1 1.6135 -8.0780 -4.5570 19 6 0.5946 -9.3468 -5.9385 20 7 -0.3787 -9.4417 -6.8179 21 14 1.6809 -10.8246 -5.5844 22 1 1.0921 -11.6174 -4.4753 23 1 1.7773 -11.6710 -6.8008 24 1 3.0369 -10.3605 -5.1956 25 7 0.5006 -5.8289 -3.3479 26 1 -0.3633 -0.0001 1.0276 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5140 29 1 4.4005 1.3688 -0.0003 30 1 2.6274 -3.1530 0.4335 31 1 0.9357 -2.6222 0.5897 32 1 1.0332 -4.8481 -0.9261 33 1 1.3613 -2.8143 -4.1565 34 1 0.7185 -4.2900 -6.2289 35 1 -1.0977 -7.2088 -5.3294 36 1 0.0179 -6.6988 -6.6192 37 1 -0.5333 -10.2795 -7.2817 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001628448756.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:24 Heat of formation + Delta-G solvation = 76.033606 kcal Electronic energy + Delta-G solvation = -21710.126738 eV Core-core repulsion = 18296.331728 eV Total energy + Delta-G solvation = -3413.795010 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.03469 -42.16915 -40.44203 -36.22203 -35.26432 -34.00305 -33.82201 -32.67974 -30.97013 -29.98136 -28.51971 -26.84461 -24.99965 -23.25039 -22.50847 -21.90702 -21.00854 -20.43881 -18.78131 -18.66002 -18.16803 -17.92911 -16.99152 -16.72270 -16.20459 -15.97706 -15.71181 -15.28918 -14.97282 -14.44937 -14.28744 -14.20231 -13.82247 -13.76243 -13.66517 -13.60674 -13.15351 -13.01475 -12.90808 -12.73350 -12.29770 -12.04777 -11.62039 -11.38715 -10.95823 -10.90532 -10.73220 -10.71316 -9.75805 -9.14771 -9.12201 -8.33548 -6.47988 0.94364 0.97606 1.37899 1.38763 1.45246 1.49600 1.52845 2.17302 2.23695 2.29130 2.34305 2.52622 2.98336 3.56319 3.75941 3.90559 4.07286 4.10227 4.27504 4.42681 4.49580 4.56247 4.79473 4.88600 4.89328 4.92434 5.02206 5.03952 5.12649 5.17337 5.27350 5.55983 5.79160 5.84886 5.94320 6.24770 6.31257 6.61983 6.64151 7.01674 7.16721 7.18482 7.22197 8.74196 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.036014 B = 0.002871 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.294416 B = 9749.964898 C =10036.779360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.008 4.008 3 N -0.540 5.540 4 C 0.194 3.806 5 N -0.554 5.554 6 H 0.434 0.566 7 C -0.016 4.016 8 C -0.047 4.047 9 C 0.518 3.482 10 O -0.543 6.543 11 N -0.623 5.623 12 C 0.267 3.733 13 C -0.294 4.294 14 C 0.054 3.946 15 N -0.344 5.344 16 C 0.272 3.728 17 C -0.547 4.547 18 H 0.053 0.947 19 C 0.018 3.982 20 N -0.922 5.922 21 Si 0.973 3.027 22 H -0.271 1.271 23 H -0.273 1.273 24 H -0.272 1.272 25 N -0.344 5.344 26 H 0.085 0.915 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.243 0.757 30 H 0.143 0.857 31 H 0.150 0.850 32 H 0.427 0.573 33 H 0.163 0.837 34 H 0.198 0.802 35 H 0.022 0.978 36 H 0.057 0.943 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.313 14.729 16.013 22.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.137 4.137 3 N -0.260 5.260 4 C -0.090 4.090 5 N -0.158 5.158 6 H 0.274 0.726 7 C -0.132 4.132 8 C -0.088 4.088 9 C 0.306 3.694 10 O -0.418 6.418 11 N -0.273 5.273 12 C 0.012 3.988 13 C -0.325 4.325 14 C -0.095 4.095 15 N -0.126 5.126 16 C 0.153 3.847 17 C -0.585 4.585 18 H 0.072 0.928 19 C -0.183 4.183 20 N -0.560 5.560 21 Si 0.797 3.203 22 H -0.197 1.197 23 H -0.198 1.198 24 H -0.196 1.196 25 N -0.175 5.175 26 H 0.103 0.897 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.259 0.741 30 H 0.161 0.839 31 H 0.167 0.833 32 H 0.266 0.734 33 H 0.181 0.819 34 H 0.214 0.786 35 H 0.040 0.960 36 H 0.074 0.926 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.661 14.747 15.564 22.452 hybrid contribution 1.086 -1.338 -0.344 1.757 sum 7.747 13.409 15.220 21.713 Atomic orbital electron populations 1.20058 0.87428 1.02319 1.02767 1.20815 0.97219 0.88509 1.07120 1.70140 1.02220 1.31826 1.21835 1.25594 0.97457 0.82624 1.03355 1.43138 1.08076 1.08740 1.55850 0.72558 1.20303 0.84665 0.95657 1.12592 1.20063 1.07050 0.90296 0.91368 1.21401 0.75454 0.79647 0.92901 1.90677 1.50788 1.53112 1.47225 1.42626 1.66132 1.14300 1.04241 1.19473 1.00005 0.91973 0.87357 1.21676 1.18400 1.02841 0.89604 1.23140 0.99473 0.85202 1.01673 1.48831 1.49680 1.10859 1.03258 1.19334 0.95129 0.81539 0.88653 1.21398 1.16380 0.96281 1.24480 0.92827 1.25760 0.96791 1.01498 0.94224 1.70000 1.31406 1.28061 1.26564 0.85328 0.78684 0.78202 0.78088 1.19685 1.19813 1.19632 1.77246 1.28468 1.19020 0.92739 0.89679 0.92315 0.91536 0.74088 0.83947 0.83255 0.73441 0.81927 0.78563 0.96041 0.92557 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.37 10.13 71.24 0.72 -0.65 16 2 C -0.01 -0.18 7.09 41.39 0.29 0.11 16 3 N -0.54 -13.41 11.25 -188.32 -2.12 -15.53 16 4 C 0.19 3.25 13.04 180.26 2.35 5.60 16 5 N -0.55 -7.97 6.15 -186.49 -1.15 -9.12 16 6 H 0.43 3.26 8.96 -92.71 -0.83 2.43 16 7 C -0.02 -0.29 5.73 40.95 0.23 -0.06 16 8 C -0.05 -0.62 5.81 29.10 0.17 -0.45 16 9 C 0.52 12.31 7.79 87.66 0.68 13.00 16 10 O -0.54 -17.67 13.17 -3.08 -0.04 -17.71 16 11 N -0.62 -16.43 5.45 -307.51 -1.68 -18.11 16 12 C 0.27 10.17 8.11 133.33 1.08 11.25 16 13 C -0.29 -11.37 9.61 22.11 0.21 -11.15 16 14 C 0.05 2.12 11.44 83.52 0.96 3.08 16 15 N -0.34 -16.05 3.67 -351.83 -1.29 -17.34 16 16 C 0.27 14.07 6.26 85.63 0.54 14.61 16 17 C -0.55 -30.61 9.24 25.60 0.24 -30.37 16 18 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 19 C 0.02 0.96 5.46 84.65 0.46 1.43 16 20 N -0.92 -52.00 13.29 21.44 0.28 -51.72 16 21 Si 0.97 43.02 29.54 68.60 2.03 45.04 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 25 N -0.34 -15.55 12.42 -54.45 -0.68 -16.23 16 26 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.07 1.30 7.89 -2.39 -0.02 1.28 16 29 H 0.24 1.81 8.06 -2.91 -0.02 1.79 16 30 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.15 1.15 8.03 -2.39 -0.02 1.13 16 32 H 0.43 8.29 8.82 -92.71 -0.82 7.48 16 33 H 0.16 6.19 5.92 -2.91 -0.02 6.17 16 34 H 0.20 6.23 8.06 -2.91 -0.02 6.21 16 35 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.06 2.86 8.07 -2.39 -0.02 2.84 16 37 H 0.27 14.38 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -79.49 328.46 2.78 -76.71 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -0.52 Total: 17.61 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 7.94 Total: 6.38 kcal Atomic # 7 Polarization: -121.42 SS G_CDS: -6.62 Total: -128.05 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.04 Total: -17.71 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -79.49 2.78 -76.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001628448756.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.745 kcal (2) G-P(sol) polarization free energy of solvation -79.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds