Wall clock time and date at job start Tue Mar 31 2020 05:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35240 * 126.07515 * 2 1 4 4 C 1.40398 * 107.86636 * 179.97438 * 3 2 1 5 5 N 1.40201 * 125.96716 * 180.02562 * 4 3 2 6 6 C 1.34771 * 120.00182 * 0.02562 * 5 4 3 7 7 O 1.21591 * 120.00093 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99948 * 180.02562 * 6 5 4 9 9 C 1.47588 * 134.49251 * 179.97438 * 8 6 5 10 10 C 1.53946 * 86.11448 * 155.35477 * 9 8 6 11 11 C 1.47206 * 113.73976 * 137.95454 * 10 9 8 12 12 N 9.92872 * 141.53446 * 356.98656 * 2 1 3 13 13 C 1.47814 * 134.45942 * 359.85953 * 8 6 5 14 14 N 1.31202 * 108.05947 * 0.26744 * 4 3 2 15 15 N 1.34963 * 126.06613 * 179.97438 * 2 1 3 16 16 C 1.46508 * 125.98043 * 0.02562 * 15 2 1 17 17 C 1.50693 * 109.47179 * 89.99540 * 16 15 2 18 18 H 1.08005 * 120.00072 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00064 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99852 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00284 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47023 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47291 * 120.00662 * 21 19 17 24 24 H 1.48499 * 109.47038 * 240.00723 * 21 19 17 25 25 H 1.09001 * 109.47401 * 90.01767 * 1 2 3 26 26 H 1.08998 * 109.47090 * 210.02200 * 1 2 3 27 27 H 1.09007 * 109.46854 * 330.01695 * 1 2 3 28 28 H 1.07995 * 126.06186 * 359.97438 * 3 2 1 29 29 H 0.97005 * 119.99597 * 180.02562 * 5 4 3 30 30 H 1.08999 * 113.76895 * 41.05627 * 9 8 6 31 31 H 1.08994 * 113.87219 * 269.66993 * 9 8 6 32 32 H 1.09002 * 113.74429 * 269.15065 * 10 9 8 33 33 H 1.09000 * 113.76391 * 90.37880 * 13 8 6 34 34 H 1.09001 * 113.83494 * 318.92589 * 13 8 6 35 35 H 1.08999 * 109.46993 * 210.00384 * 16 15 2 36 36 H 1.09004 * 109.46600 * 330.00014 * 16 15 2 37 37 H 0.96999 * 120.00365 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6544 0.0006 5 7 4.7738 1.4749 0.0013 6 6 4.6371 2.8157 0.0020 7 8 3.5279 3.3137 0.0015 8 7 5.7300 3.6045 0.0021 9 6 5.9524 5.0635 0.0023 10 6 7.3167 4.7499 0.6428 11 6 8.4254 5.5501 0.0976 12 7 9.2810 6.1676 -0.3247 13 6 7.1869 3.3550 0.0043 14 7 3.6337 -0.6577 -0.0049 15 7 2.3016 -1.0910 0.0005 16 6 1.8500 -2.4847 0.0006 17 6 1.6955 -2.9628 -1.4201 18 1 1.9125 -2.2954 -2.2411 19 6 1.2783 -4.2525 -1.6720 20 7 1.0146 -5.0654 -0.6723 21 14 1.0875 -4.8455 -3.4331 22 1 1.4443 -3.7470 -4.3666 23 1 1.9871 -6.0039 -3.6656 24 1 -0.3200 -5.2569 -3.6671 25 1 -0.3634 -0.0003 -1.0277 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3633 0.8902 0.5136 28 1 1.9721 2.1210 -0.0004 29 1 5.6588 1.0776 0.0013 30 1 5.2750 5.6111 0.6575 31 1 6.0247 5.4988 -0.9943 32 1 7.2975 4.7375 1.7326 33 1 7.6221 3.2858 -0.9926 34 1 7.4933 2.5408 0.6610 35 1 2.5844 -3.1045 0.5149 36 1 0.8911 -2.5558 0.5141 37 1 0.7207 -5.9726 -0.8494 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660339624.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:23 Heat of formation + Delta-G solvation = 122.737233 kcal Electronic energy + Delta-G solvation = -21628.757894 eV Core-core repulsion = 18216.988105 eV Total energy + Delta-G solvation = -3411.769789 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.06678 -40.34447 -38.50262 -36.47307 -34.82329 -33.39172 -31.61586 -30.98821 -30.06816 -26.93842 -26.58310 -26.31315 -24.32379 -22.84231 -20.90858 -19.77334 -19.23610 -18.59023 -17.67294 -16.69411 -16.52188 -15.70536 -15.53511 -15.16573 -14.75924 -14.45585 -14.36115 -14.06724 -13.72178 -13.52035 -13.12060 -12.94809 -12.61816 -12.48907 -12.38143 -12.28832 -12.13019 -11.68150 -11.47093 -11.39863 -11.10128 -10.85585 -10.45695 -10.27570 -10.06723 -9.71163 -9.53768 -9.14641 -8.65331 -7.93920 -7.43343 -6.26183 -4.33564 1.92067 2.10402 2.26080 2.58594 3.00475 3.18238 3.19772 3.27772 3.34228 3.44900 3.80351 3.81934 3.96510 4.25928 4.31273 4.55003 4.80937 4.88437 5.02685 5.07698 5.17269 5.41675 5.45332 5.69804 5.91948 6.11753 6.21846 6.44859 6.57788 6.65172 6.88435 7.01028 7.04179 7.11812 7.48476 7.66873 7.83090 7.88687 8.05300 8.48038 8.65435 8.75131 9.32822 10.81087 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.028181 B = 0.002960 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.345211 B = 9456.453920 C = 9958.482885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.092 3.908 3 C -0.289 4.289 4 C 0.281 3.719 5 N -0.639 5.639 6 C 0.742 3.258 7 O -0.557 6.557 8 N -0.664 5.664 9 C 0.150 3.850 10 C -0.032 4.032 11 C 0.214 3.786 12 N -0.421 5.421 13 C 0.115 3.885 14 N -0.322 5.322 15 N -0.318 5.318 16 C 0.258 3.742 17 C -0.534 4.534 18 H 0.065 0.935 19 C 0.065 3.935 20 N -0.892 5.892 21 Si 0.906 3.094 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.281 1.281 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.160 0.840 29 H 0.406 0.594 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.149 0.851 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.653 16.523 4.246 19.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.039 4.039 3 C -0.320 4.320 4 C 0.027 3.973 5 N -0.288 5.288 6 C 0.444 3.556 7 O -0.432 6.432 8 N -0.406 5.406 9 C 0.026 3.974 10 C -0.054 4.054 11 C -0.105 4.105 12 N -0.097 5.097 13 C -0.010 4.010 14 N -0.153 5.153 15 N -0.100 5.100 16 C 0.141 3.859 17 C -0.573 4.573 18 H 0.083 0.917 19 C -0.138 4.138 20 N -0.530 5.530 21 Si 0.733 3.267 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.206 1.206 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.177 0.823 29 H 0.241 0.759 30 H 0.119 0.881 31 H 0.110 0.890 32 H 0.166 0.834 33 H 0.113 0.887 34 H 0.118 0.882 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.546 16.321 3.656 19.258 hybrid contribution -0.244 -0.338 -0.847 0.944 sum 9.302 15.983 2.809 18.705 Atomic orbital electron populations 1.20336 0.87880 1.02826 1.03179 1.21059 0.94914 0.87132 1.00837 1.21214 0.89651 0.99805 1.21355 1.18638 0.86423 0.89265 1.02928 1.41275 1.07702 1.03415 1.76415 1.14965 0.82821 0.80126 0.77682 1.90904 1.22374 1.73341 1.56538 1.48867 1.04421 1.07693 1.79612 1.22964 0.91516 0.81489 1.01444 1.20881 0.88383 0.93598 1.02548 1.28671 0.94091 0.94010 0.93726 1.81313 1.10481 1.09074 1.08794 1.23265 0.80293 0.95743 1.01673 1.77250 0.99998 1.08232 1.29801 1.48981 1.00860 1.07775 1.52392 1.19691 0.95976 0.71326 0.98931 1.21362 1.46598 0.97914 0.91420 0.91711 1.24929 0.94709 0.96094 0.98098 1.69926 1.45046 1.07082 1.30947 0.86308 0.77870 0.78795 0.83758 1.19584 1.20680 1.20642 0.90425 0.90865 0.90795 0.82257 0.75926 0.88075 0.89009 0.83385 0.88709 0.88227 0.93012 0.92758 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.41 10.11 36.01 0.36 -1.05 16 2 C 0.09 1.91 6.92 -82.28 -0.57 1.34 16 3 C -0.29 -5.85 9.52 -39.84 -0.38 -6.23 16 4 C 0.28 5.57 8.11 -154.36 -1.25 4.32 16 5 N -0.64 -9.49 5.45 -15.51 -0.08 -9.58 16 6 C 0.74 10.27 8.73 -86.92 -0.76 9.52 16 7 O -0.56 -9.75 14.20 5.29 0.08 -9.68 16 8 N -0.66 -5.63 3.61 -184.06 -0.66 -6.30 16 9 C 0.15 0.80 8.37 -2.96 -0.02 0.78 16 10 C -0.03 -0.11 4.37 -92.47 -0.40 -0.51 16 11 C 0.21 1.29 15.10 -20.74 -0.31 0.97 16 12 N -0.42 -4.00 18.54 42.17 0.78 -3.22 16 13 C 0.11 0.50 7.99 -2.83 -0.02 0.48 16 14 N -0.32 -7.28 12.59 31.44 0.40 -6.88 16 15 N -0.32 -7.42 3.59 -58.32 -0.21 -7.63 16 16 C 0.26 6.54 5.99 -5.19 -0.03 6.51 16 17 C -0.53 -14.58 9.39 -34.44 -0.32 -14.90 16 18 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -24.85 13.29 55.43 0.74 -24.11 16 21 Si 0.91 20.95 29.54 -169.99 -5.02 15.93 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 25 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 26 H 0.07 1.23 7.07 -51.93 -0.37 0.87 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.16 3.16 5.91 -52.49 -0.31 2.85 16 29 H 0.41 4.78 8.43 -40.82 -0.34 4.43 16 30 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.45 8.08 -51.93 -0.42 0.03 16 32 H 0.15 0.18 8.14 -51.93 -0.42 -0.25 16 33 H 0.09 0.36 8.08 -51.93 -0.42 -0.06 16 34 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.05 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.05 1.36 7.04 -51.93 -0.37 0.99 16 37 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 331.79 15.07 5.00 5.00 Total: -1.00 -35.07 331.79 -7.11 -42.18 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -4.31 Total: 1.40 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -3.81 Total: 2.88 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: 0.96 Total: -57.72 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.08 Total: -9.68 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.07 -7.11 -42.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660339624.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.921 kcal (2) G-P(sol) polarization free energy of solvation -35.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds