Wall clock time and date at job start Tue Mar 31 2020 05:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35240 * 126.07515 * 2 1 4 4 C 1.40398 * 107.86636 * 179.97438 * 3 2 1 5 5 N 1.40201 * 125.96716 * 180.02562 * 4 3 2 6 6 C 1.34771 * 120.00182 * 0.02562 * 5 4 3 7 7 O 1.21591 * 120.00093 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99948 * 180.02562 * 6 5 4 9 9 C 1.47588 * 134.49251 * 179.97438 * 8 6 5 10 10 C 1.53946 * 86.11448 * 155.35477 * 9 8 6 11 11 C 1.47206 * 113.73976 * 137.95454 * 10 9 8 12 12 N 9.92872 * 141.53446 * 356.98656 * 2 1 3 13 13 C 1.47814 * 134.45942 * 359.85953 * 8 6 5 14 14 N 1.31202 * 108.05947 * 0.26744 * 4 3 2 15 15 N 1.34963 * 126.06613 * 179.97438 * 2 1 3 16 16 C 1.46508 * 125.98043 * 0.02562 * 15 2 1 17 17 C 1.50693 * 109.47179 * 89.99540 * 16 15 2 18 18 H 1.08005 * 120.00072 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00064 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99852 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00284 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47023 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47291 * 120.00662 * 21 19 17 24 24 H 1.48499 * 109.47038 * 240.00723 * 21 19 17 25 25 H 1.09001 * 109.47401 * 90.01767 * 1 2 3 26 26 H 1.08998 * 109.47090 * 210.02200 * 1 2 3 27 27 H 1.09007 * 109.46854 * 330.01695 * 1 2 3 28 28 H 1.07995 * 126.06186 * 359.97438 * 3 2 1 29 29 H 0.97005 * 119.99597 * 180.02562 * 5 4 3 30 30 H 1.08999 * 113.76895 * 41.05627 * 9 8 6 31 31 H 1.08994 * 113.87219 * 269.66993 * 9 8 6 32 32 H 1.09002 * 113.74429 * 269.15065 * 10 9 8 33 33 H 1.09000 * 113.76391 * 90.37880 * 13 8 6 34 34 H 1.09001 * 113.83494 * 318.92589 * 13 8 6 35 35 H 1.08999 * 109.46993 * 210.00384 * 16 15 2 36 36 H 1.09004 * 109.46600 * 330.00014 * 16 15 2 37 37 H 0.96999 * 120.00365 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6544 0.0006 5 7 4.7738 1.4749 0.0013 6 6 4.6371 2.8157 0.0020 7 8 3.5279 3.3137 0.0015 8 7 5.7300 3.6045 0.0021 9 6 5.9524 5.0635 0.0023 10 6 7.3167 4.7499 0.6428 11 6 8.4254 5.5501 0.0976 12 7 9.2810 6.1676 -0.3247 13 6 7.1869 3.3550 0.0043 14 7 3.6337 -0.6577 -0.0049 15 7 2.3016 -1.0910 0.0005 16 6 1.8500 -2.4847 0.0006 17 6 1.6955 -2.9628 -1.4201 18 1 1.9125 -2.2954 -2.2411 19 6 1.2783 -4.2525 -1.6720 20 7 1.0146 -5.0654 -0.6723 21 14 1.0875 -4.8455 -3.4331 22 1 1.4443 -3.7470 -4.3666 23 1 1.9871 -6.0039 -3.6656 24 1 -0.3200 -5.2569 -3.6671 25 1 -0.3634 -0.0003 -1.0277 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3633 0.8902 0.5136 28 1 1.9721 2.1210 -0.0004 29 1 5.6588 1.0776 0.0013 30 1 5.2750 5.6111 0.6575 31 1 6.0247 5.4988 -0.9943 32 1 7.2975 4.7375 1.7326 33 1 7.6221 3.2858 -0.9926 34 1 7.4933 2.5408 0.6610 35 1 2.5844 -3.1045 0.5149 36 1 0.8911 -2.5558 0.5141 37 1 0.7207 -5.9726 -0.8494 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660339624.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:23 Heat of formation + Delta-G solvation = 99.302809 kcal Electronic energy + Delta-G solvation = -21629.774086 eV Core-core repulsion = 18216.988105 eV Total energy + Delta-G solvation = -3412.785981 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.30445 -41.41899 -39.46459 -37.11169 -36.25135 -35.26439 -33.11334 -32.61818 -31.00987 -28.48305 -27.84006 -27.26141 -25.39941 -24.44087 -22.14608 -21.20455 -20.34387 -19.22081 -18.78757 -18.46814 -17.77495 -17.18114 -16.62304 -16.48630 -15.93868 -15.75289 -15.46895 -15.17799 -14.67374 -14.51787 -14.27048 -14.03402 -13.76583 -13.66616 -13.51414 -13.48992 -13.19454 -13.11745 -12.84840 -12.73002 -12.65851 -12.24327 -12.06655 -11.89016 -11.53495 -11.32629 -11.08697 -10.71718 -9.91025 -9.51863 -9.03446 -8.30638 -6.48125 0.95336 1.06484 1.38060 1.40005 1.52359 1.60525 1.68363 1.78249 1.92249 2.35604 2.39820 2.75418 2.98779 3.02915 3.42130 3.73857 3.91216 4.20023 4.26092 4.30405 4.49515 4.55736 4.59541 4.75314 4.75737 4.88669 4.93121 5.02164 5.05504 5.10804 5.19297 5.35245 5.56305 5.83781 5.96248 6.01796 6.30011 6.54771 6.63944 6.71100 7.11917 7.22795 7.41925 8.75074 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.028181 B = 0.002960 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.345211 B = 9456.453920 C = 9958.482885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.087 3.913 3 C -0.297 4.297 4 C 0.293 3.707 5 N -0.632 5.632 6 C 0.738 3.262 7 O -0.599 6.599 8 N -0.661 5.661 9 C 0.143 3.857 10 C -0.007 4.007 11 C 0.248 3.752 12 N -0.481 5.481 13 C 0.112 3.888 14 N -0.359 5.359 15 N -0.344 5.344 16 C 0.275 3.725 17 C -0.550 4.550 18 H 0.048 0.952 19 C 0.023 3.977 20 N -0.918 5.918 21 Si 0.971 3.029 22 H -0.274 1.274 23 H -0.275 1.275 24 H -0.268 1.268 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.106 0.894 28 H 0.166 0.834 29 H 0.420 0.580 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.181 0.819 33 H 0.104 0.896 34 H 0.123 0.877 35 H 0.025 0.975 36 H 0.052 0.948 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.184 17.509 4.043 20.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.043 4.043 3 C -0.328 4.328 4 C 0.037 3.963 5 N -0.283 5.283 6 C 0.441 3.559 7 O -0.476 6.476 8 N -0.401 5.401 9 C 0.020 3.980 10 C -0.028 4.028 11 C -0.070 4.070 12 N -0.157 5.157 13 C -0.011 4.011 14 N -0.189 5.189 15 N -0.127 5.127 16 C 0.156 3.844 17 C -0.589 4.589 18 H 0.067 0.933 19 C -0.178 4.178 20 N -0.557 5.557 21 Si 0.795 3.205 22 H -0.199 1.199 23 H -0.200 1.200 24 H -0.193 1.193 25 H 0.101 0.899 26 H 0.087 0.913 27 H 0.124 0.876 28 H 0.184 0.816 29 H 0.258 0.742 30 H 0.128 0.872 31 H 0.116 0.884 32 H 0.198 0.802 33 H 0.122 0.878 34 H 0.142 0.858 35 H 0.043 0.957 36 H 0.070 0.930 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.147 17.354 3.463 20.399 hybrid contribution -0.326 -0.504 -0.749 0.960 sum 9.821 16.850 2.714 19.692 Atomic orbital electron populations 1.20467 0.85445 1.04211 1.03880 1.21730 0.96623 0.86481 0.99513 1.21387 0.89966 0.99815 1.21624 1.18933 0.88032 0.88887 1.00408 1.41282 1.06987 1.03660 1.76416 1.15128 0.83631 0.79731 0.77425 1.90859 1.24568 1.73870 1.58332 1.48907 1.04902 1.08773 1.77526 1.23259 0.92607 0.79714 1.02436 1.20873 0.86026 0.92057 1.03889 1.28919 0.93354 0.92735 0.92027 1.81365 1.12529 1.11041 1.10808 1.23611 0.77264 0.97140 1.03087 1.77166 1.00001 1.09717 1.32062 1.48764 1.01714 1.07462 1.54749 1.19238 0.94956 0.72468 0.97694 1.21465 1.47286 0.98278 0.91839 0.93321 1.25715 0.94035 0.95982 1.02108 1.70004 1.45237 1.07542 1.32868 0.85318 0.78432 0.78068 0.78708 1.19890 1.20014 1.19271 0.89923 0.91286 0.87557 0.81648 0.74239 0.87242 0.88387 0.80174 0.87759 0.85847 0.95674 0.92984 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.71 10.11 71.24 0.72 -1.99 16 2 C 0.09 3.62 6.92 41.39 0.29 3.91 16 3 C -0.30 -11.97 9.52 22.10 0.21 -11.76 16 4 C 0.29 11.58 8.11 133.31 1.08 12.67 16 5 N -0.63 -18.09 5.45 -321.24 -1.75 -19.84 16 6 C 0.74 19.34 8.73 179.06 1.56 20.90 16 7 O -0.60 -20.43 14.20 -4.00 -0.06 -20.49 16 8 N -0.66 -9.48 3.61 -854.49 -3.09 -12.57 16 9 C 0.14 1.12 8.37 86.48 0.72 1.84 16 10 C -0.01 -0.02 4.37 -11.93 -0.05 -0.07 16 11 C 0.25 2.34 15.10 89.44 1.35 3.69 16 12 N -0.48 -8.46 18.54 20.01 0.37 -8.09 16 13 C 0.11 0.58 7.99 86.44 0.69 1.28 16 14 N -0.36 -16.50 12.59 -54.44 -0.69 -17.18 16 15 N -0.34 -16.49 3.59 -338.44 -1.22 -17.70 16 16 C 0.28 14.42 5.99 85.63 0.51 14.93 16 17 C -0.55 -30.66 9.39 25.60 0.24 -30.42 16 18 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 19 C 0.02 1.22 5.46 84.65 0.46 1.68 16 20 N -0.92 -51.46 13.29 21.45 0.28 -51.17 16 21 Si 0.97 42.83 29.54 68.60 2.03 44.86 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 25 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 26 H 0.07 2.32 7.07 -2.39 -0.02 2.31 16 27 H 0.11 2.77 8.14 -2.38 -0.02 2.75 16 28 H 0.17 6.49 5.91 -2.91 -0.02 6.48 16 29 H 0.42 9.22 8.43 -92.70 -0.78 8.44 16 30 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.10 0.70 8.08 -2.39 -0.02 0.69 16 32 H 0.18 -0.46 8.14 -2.39 -0.02 -0.48 16 33 H 0.10 0.45 8.08 -2.39 -0.02 0.43 16 34 H 0.12 0.16 8.14 -2.39 -0.02 0.15 16 35 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.05 2.70 7.04 -2.39 -0.02 2.68 16 37 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -78.10 331.79 4.01 -74.08 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.34 Total: 11.44 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: 7.79 Total: 16.66 kcal Atomic # 7 Polarization: -120.47 SS G_CDS: -6.08 Total: -126.56 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.06 Total: -20.49 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -78.10 4.01 -74.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660339624.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.385 kcal (2) G-P(sol) polarization free energy of solvation -78.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds