Wall clock time and date at job start Tue Mar 31 2020 06:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46504 * 119.99525 * 2 1 4 4 C 1.53007 * 109.46559 * 269.99918 * 3 2 1 5 5 N 1.46508 * 109.46558 * 180.02562 * 4 3 2 6 6 C 1.36934 * 119.99587 * 179.97438 * 5 4 3 7 7 H 1.08005 * 120.00113 * 0.02562 * 6 5 4 8 8 C 1.38815 * 119.99910 * 179.97438 * 6 5 4 9 9 N 1.31621 * 120.00066 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00013 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47369 * 60.00317 * 10 8 6 12 12 H 1.48498 * 109.46854 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.46980 * 300.00080 * 10 8 6 14 14 C 1.34773 * 120.00488 * 179.97438 * 2 1 3 15 15 O 1.21572 * 120.00320 * 184.86904 * 14 2 1 16 16 C 1.47717 * 119.99750 * 4.86713 * 14 2 1 17 17 C 1.40260 * 119.88232 * 140.35532 * 16 14 2 18 18 C 1.36159 * 120.56066 * 179.97438 * 17 16 14 19 19 C 1.39905 * 119.97424 * 0.02562 * 18 17 16 20 20 N 1.34758 * 134.59092 * 180.02562 * 19 18 17 21 21 N 1.28649 * 109.29099 * 179.97438 * 20 19 18 22 22 N 1.28809 * 111.79116 * 359.97438 * 21 20 19 23 23 H 0.96999 * 125.94086 * 179.97438 * 22 21 20 24 24 C 1.37367 * 108.11634 * 359.78822 * 22 21 20 25 25 C 1.38621 * 134.88371 * 179.55303 * 24 22 21 26 26 H 1.09002 * 109.47097 * 265.91607 * 1 2 3 27 27 H 1.08998 * 109.47545 * 25.91892 * 1 2 3 28 28 H 1.09001 * 109.46712 * 145.92604 * 1 2 3 29 29 H 1.09000 * 109.47496 * 29.99454 * 3 2 1 30 30 H 1.08996 * 109.47175 * 149.99971 * 3 2 1 31 31 H 1.08992 * 109.47008 * 299.99645 * 4 3 2 32 32 H 1.08996 * 109.47334 * 60.00150 * 4 3 2 33 33 H 0.96993 * 119.99999 * 359.97438 * 5 4 3 34 34 H 0.96992 * 120.00007 * 179.97438 * 9 8 6 35 35 H 1.08001 * 119.71872 * 0.02562 * 17 16 14 36 36 H 1.07993 * 120.01204 * 180.02562 * 18 17 16 37 37 H 1.08005 * 120.24700 * 0.63560 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4426 5 7 3.1853 2.9790 -1.4426 6 6 3.5282 3.5715 -2.6286 7 1 3.2578 3.1040 -3.5639 8 6 4.2222 4.7737 -2.6286 9 7 4.5511 5.3438 -1.4888 10 14 4.6892 5.5825 -4.2464 11 1 3.4599 5.8780 -5.0252 12 1 5.4197 6.8466 -3.9751 13 1 5.5600 4.6654 -5.0250 14 6 2.1390 -1.1671 0.0005 15 8 3.3514 -1.1689 0.0899 16 6 1.4045 -2.4442 -0.1074 17 6 1.9235 -3.4847 -0.8917 18 6 1.2582 -4.6677 -1.0005 19 6 0.0460 -4.8524 -0.3271 20 7 -0.8353 -5.8669 -0.2263 21 7 -1.8076 -5.5110 0.5372 22 7 -1.6565 -4.3091 0.9751 23 1 -2.2659 -3.8368 1.5636 24 6 -0.4800 -3.8142 0.4672 25 6 0.2000 -2.6106 0.5695 26 1 -0.3633 -0.0732 1.0251 27 1 -0.3634 0.9243 -0.4492 28 1 -0.3633 -0.8513 -0.5758 29 1 1.6083 2.0285 0.5137 30 1 3.1498 1.1386 0.5138 31 1 3.0415 0.9508 -1.9563 32 1 1.5000 1.8406 -1.9564 33 1 3.4277 3.3990 -0.6026 34 1 5.0364 6.1836 -1.4889 35 1 2.8592 -3.3467 -1.4131 36 1 1.6662 -5.4631 -1.6065 37 1 -0.1999 -1.8094 1.1734 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753259855.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:59 Heat of formation + Delta-G solvation = 106.497952 kcal Electronic energy + Delta-G solvation = -21861.699500 eV Core-core repulsion = 18449.225523 eV Total energy + Delta-G solvation = -3412.473977 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.59996 -40.33817 -37.76279 -36.09314 -34.59102 -34.14787 -31.79111 -31.05227 -30.71846 -28.23311 -26.91298 -25.02908 -24.07352 -23.24922 -22.85091 -21.63443 -20.04521 -18.83416 -18.18191 -17.30853 -17.04313 -16.64800 -15.98275 -15.68078 -15.17797 -14.87085 -14.39776 -14.31413 -13.59551 -13.35804 -13.25129 -13.11444 -12.88123 -12.61657 -12.54339 -12.34087 -12.11498 -11.60248 -11.33776 -11.14048 -11.03874 -10.92316 -10.70404 -10.17141 -10.01824 -9.74622 -9.37875 -8.89210 -8.81975 -8.66397 -6.96276 -5.78050 -3.07696 -0.03419 0.80672 1.76343 2.05536 2.59598 2.86543 3.30721 3.44022 3.48299 3.49514 3.57241 4.12735 4.18868 4.49339 4.56150 4.59696 4.70316 4.92740 4.98581 5.11663 5.34510 5.44758 5.47776 5.51327 5.59847 5.73294 5.76204 5.89440 5.96477 6.04591 6.17199 6.33884 6.44517 6.67261 6.82301 7.29615 7.68048 7.83979 8.05469 8.40326 9.51326 10.06597 10.41618 11.44754 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.036067 B = 0.002848 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.155070 B = 9827.979607 C =10016.085736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.603 5.603 3 C 0.106 3.894 4 C 0.143 3.857 5 N -0.730 5.730 6 C -0.240 4.240 7 H 0.070 0.930 8 C -0.013 4.013 9 N -0.934 5.934 10 Si 0.909 3.091 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.555 3.445 15 O -0.517 6.517 16 C -0.082 4.082 17 C -0.069 4.069 18 C -0.053 4.053 19 C 0.024 3.976 20 N -0.251 5.251 21 N -0.011 5.011 22 N -0.415 5.415 23 H 0.453 0.547 24 C 0.019 3.981 25 C -0.076 4.076 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.023 0.977 32 H 0.019 0.981 33 H 0.384 0.616 34 H 0.256 0.744 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.213 -18.316 6.758 24.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.335 5.335 3 C -0.016 4.016 4 C 0.014 3.986 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.088 0.912 8 C -0.209 4.209 9 N -0.582 5.582 10 Si 0.740 3.260 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.342 3.658 15 O -0.393 6.393 16 C -0.089 4.089 17 C -0.090 4.090 18 C -0.075 4.075 19 C -0.101 4.101 20 N -0.127 5.127 21 N 0.007 4.993 22 N -0.143 5.143 23 H 0.300 0.700 24 C -0.100 4.100 25 C -0.099 4.099 26 H 0.075 0.925 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.041 0.959 32 H 0.037 0.963 33 H 0.218 0.782 34 H 0.066 0.934 35 H 0.167 0.833 36 H 0.164 0.836 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -14.386 -19.552 6.588 25.152 hybrid contribution 0.379 1.921 -0.159 1.964 sum -14.006 -17.632 6.429 23.418 Atomic orbital electron populations 1.22176 0.79904 1.04185 1.01156 1.47710 1.06917 1.06250 1.72666 1.21807 0.97699 0.82637 0.99462 1.20911 0.95220 0.89546 0.92934 1.42193 1.67086 1.21591 1.06632 1.19156 1.29643 1.02415 0.85922 0.91215 1.24753 1.01166 0.98015 0.96955 1.69646 1.44893 1.19629 1.24032 0.86235 0.78147 0.78666 0.82946 1.21247 1.21624 1.21176 1.18129 0.87136 0.83187 0.77353 1.90862 1.13143 1.86797 1.48504 1.19877 0.94236 0.95484 0.99300 1.20864 1.00091 0.90937 0.97141 1.19980 0.91165 0.98001 0.98375 1.20099 0.98029 0.90934 1.01060 1.75391 0.99766 1.23647 1.13937 1.77982 1.18625 0.95625 1.07101 1.44859 1.18332 1.11979 1.39176 0.69960 1.19625 0.90368 0.98093 1.01956 1.20519 0.93794 0.94593 1.00963 0.92454 0.90054 0.90750 0.90120 0.89250 0.95905 0.96347 0.78223 0.93388 0.83311 0.83555 0.83508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.57 8.88 59.85 0.53 1.10 16 2 N -0.60 -7.75 2.87 -182.73 -0.53 -8.28 16 3 C 0.11 1.70 5.54 -4.04 -0.02 1.68 16 4 C 0.14 2.89 6.58 -4.03 -0.03 2.87 16 5 N -0.73 -18.65 5.60 -59.90 -0.34 -18.99 16 6 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 7 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 8 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 9 N -0.93 -28.27 13.06 55.49 0.72 -27.54 16 10 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 14 C 0.56 7.78 7.33 -12.39 -0.09 7.69 16 15 O -0.52 -9.44 16.46 5.30 0.09 -9.36 16 16 C -0.08 -0.88 5.23 -104.92 -0.55 -1.42 16 17 C -0.07 -0.69 9.54 -39.57 -0.38 -1.07 16 18 C -0.05 -0.49 10.03 -39.71 -0.40 -0.89 16 19 C 0.02 0.25 7.36 -84.95 -0.63 -0.37 16 20 N -0.25 -2.91 12.42 32.09 0.40 -2.51 16 21 N -0.01 -0.11 13.28 60.35 0.80 0.69 16 22 N -0.41 -2.84 7.08 32.31 0.23 -2.61 16 23 H 0.45 1.15 8.96 -190.24 -1.71 -0.56 16 24 C 0.02 0.17 7.40 -84.24 -0.62 -0.46 16 25 C -0.08 -0.62 7.57 -39.10 -0.30 -0.91 16 26 H 0.06 0.33 6.91 -51.93 -0.36 -0.03 16 27 H 0.08 0.68 8.04 -51.93 -0.42 0.26 16 28 H 0.07 0.54 5.80 -51.93 -0.30 0.23 16 29 H 0.08 1.17 8.07 -51.93 -0.42 0.75 16 30 H 0.09 1.61 7.36 -51.93 -0.38 1.23 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.38 10.17 7.67 -40.82 -0.31 9.86 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.15 1.44 8.05 -52.49 -0.42 1.02 16 36 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.15 0.82 5.33 -52.48 -0.28 0.54 16 LS Contribution 319.28 15.07 4.81 4.81 Total: -1.00 -35.81 319.28 -6.97 -42.78 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.41 Total: 2.74 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -2.72 Total: 0.80 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: 1.29 Total: -59.24 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.81 -6.97 -42.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753259855.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.277 kcal (2) G-P(sol) polarization free energy of solvation -35.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds