Wall clock time and date at job start Tue Mar 31 2020 06:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46926 * 2 1 4 4 C 1.52999 * 109.46644 * 119.99843 * 2 1 3 5 5 N 1.46502 * 109.46873 * 174.99983 * 4 2 1 6 6 C 1.36939 * 119.99922 * 179.97438 * 5 4 2 7 7 H 1.08008 * 120.00049 * 0.02562 * 6 5 4 8 8 C 1.38811 * 120.00094 * 179.97438 * 6 5 4 9 9 N 1.31617 * 120.00199 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00270 * 179.97438 * 8 6 5 11 11 H 1.48509 * 109.46996 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47148 * 119.99927 * 10 8 6 13 13 H 1.48499 * 109.47489 * 240.00559 * 10 8 6 14 14 N 1.46496 * 109.47086 * 239.99677 * 2 1 3 15 15 C 1.34779 * 120.00113 * 85.00519 * 14 2 1 16 16 O 1.21571 * 119.99622 * 359.97438 * 15 14 2 17 17 C 1.47691 * 120.00233 * 179.97438 * 15 14 2 18 18 C 1.39985 * 120.38008 * 0.02562 * 17 15 14 19 19 N 1.31383 * 121.15381 * 180.25833 * 18 17 15 20 20 C 1.32547 * 121.79520 * 359.42574 * 19 18 17 21 21 N 1.37577 * 133.56691 * 180.19781 * 20 19 18 22 22 H 0.97003 * 126.24101 * 0.33365 * 21 20 19 23 23 C 1.36162 * 107.52621 * 180.32948 * 21 20 19 24 24 N 1.30059 * 110.11081 * 0.02562 * 23 21 20 25 25 C 1.35769 * 109.43406 * 0.02562 * 24 23 21 26 26 C 1.39491 * 133.74668 * 179.97438 * 25 24 23 27 27 H 1.08991 * 109.47280 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47138 * 300.00511 * 1 2 3 29 29 H 1.09003 * 109.46522 * 59.99839 * 1 2 3 30 30 H 1.08997 * 109.47429 * 294.99794 * 4 2 1 31 31 H 1.09000 * 109.47508 * 55.00282 * 4 2 1 32 32 H 0.96997 * 119.99902 * 0.02562 * 5 4 2 33 33 H 0.97003 * 120.00347 * 179.97438 * 9 8 6 34 34 H 0.97003 * 120.00322 * 265.00081 * 14 2 1 35 35 H 1.08002 * 119.41990 * 359.97339 * 18 17 15 36 36 H 1.08008 * 124.94854 * 180.02562 * 23 21 20 37 37 H 1.08005 * 120.96882 * 0.02571 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1837 -1.4379 2.2074 7 1 3.6466 -1.8431 3.0523 8 6 5.5671 -1.5381 2.1516 9 7 6.2217 -1.0448 1.1218 10 14 6.5000 -2.3716 3.5388 11 1 5.5395 -2.8372 4.5715 12 1 7.2508 -3.5348 3.0016 13 1 7.4509 -1.4062 4.1461 14 7 2.0183 -0.6907 -1.1961 15 6 2.1472 -0.0184 -2.3571 16 8 1.8577 1.1611 -2.4118 17 6 2.6400 -0.7145 -3.5628 18 6 2.9751 -2.0726 -3.5090 19 7 3.4197 -2.7056 -4.5709 20 6 3.5607 -2.0959 -5.7393 21 7 3.9895 -2.5099 -6.9793 22 1 4.2810 -3.4043 -7.2161 23 6 3.9301 -1.4355 -7.8136 24 7 3.4951 -0.3927 -7.1695 25 6 3.2472 -0.7303 -5.8780 26 6 2.7791 -0.0249 -4.7694 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 1.7516 -0.1583 2.1370 31 1 1.6053 -1.7198 1.2952 32 1 3.9823 -0.4622 0.4320 33 1 7.1884 -1.1144 1.0830 34 1 2.2490 -1.6318 -1.1525 35 1 2.8707 -2.6082 -2.5770 36 1 4.2042 -1.4473 -8.8582 37 1 2.5287 1.0231 -4.8427 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754269099.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:40 Heat of formation + Delta-G solvation = 62.791655 kcal Electronic energy + Delta-G solvation = -22120.090834 eV Core-core repulsion = 18705.721610 eV Total energy + Delta-G solvation = -3414.369224 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.53868 -39.84762 -38.01958 -36.16819 -33.84685 -33.66234 -31.89647 -31.15505 -30.22502 -29.34684 -25.71639 -24.61477 -23.94377 -22.65103 -21.98355 -21.02813 -20.23407 -18.84132 -18.09047 -17.26837 -16.77634 -16.29991 -15.90030 -15.47456 -14.83647 -14.58718 -14.38933 -13.94241 -13.70431 -13.48712 -13.31933 -13.10163 -12.72572 -12.35777 -12.21159 -12.11191 -11.61532 -11.34153 -11.27323 -10.91813 -10.84806 -10.46120 -10.04161 -9.93219 -9.75718 -9.31391 -9.07309 -8.93360 -8.80952 -8.67676 -6.97248 -5.78848 -3.08988 0.60729 0.72792 2.29493 2.52931 3.00991 3.30407 3.41981 3.47635 3.49948 3.84543 3.91179 4.18814 4.52475 4.56467 4.74145 4.84694 4.87435 5.16794 5.31864 5.49398 5.53629 5.55794 5.65488 5.91096 5.93068 6.01811 6.09772 6.18472 6.29133 6.40143 6.45987 6.68655 6.81205 6.91015 7.40980 7.63729 7.67919 7.79463 8.38594 8.45017 9.50769 10.06462 10.41680 11.43338 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.015635 B = 0.004177 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.442138 B = 6701.867250 C = 7986.028972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.134 3.866 3 H 0.089 0.911 4 C 0.144 3.856 5 N -0.732 5.732 6 C -0.243 4.243 7 H 0.072 0.928 8 C -0.011 4.011 9 N -0.930 5.930 10 Si 0.906 3.094 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 N -0.704 5.704 15 C 0.570 3.430 16 O -0.541 6.541 17 C -0.192 4.192 18 C 0.183 3.817 19 N -0.485 5.485 20 C 0.256 3.744 21 N -0.589 5.589 22 H 0.430 0.570 23 C 0.272 3.728 24 N -0.480 5.480 25 C -0.011 4.011 26 C 0.046 3.954 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.035 0.965 31 H 0.026 0.974 32 H 0.386 0.614 33 H 0.255 0.745 34 H 0.403 0.597 35 H 0.173 0.827 36 H 0.226 0.774 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.525 -3.720 -16.348 18.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.029 3.971 3 H 0.108 0.892 4 C 0.015 3.985 5 N -0.378 5.378 6 C -0.374 4.374 7 H 0.089 0.911 8 C -0.207 4.207 9 N -0.578 5.578 10 Si 0.738 3.262 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 N -0.355 5.355 15 C 0.356 3.644 16 O -0.420 6.420 17 C -0.200 4.200 18 C 0.014 3.986 19 N -0.197 5.197 20 C 0.019 3.981 21 N -0.204 5.204 22 H 0.270 0.730 23 C -0.017 4.017 24 N -0.199 5.199 25 C -0.130 4.130 26 C 0.019 3.981 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.220 0.780 33 H 0.065 0.935 34 H 0.239 0.761 35 H 0.190 0.810 36 H 0.242 0.758 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -8.609 -2.965 -16.519 18.862 hybrid contribution 1.138 -1.271 0.606 1.810 sum -7.471 -4.237 -15.913 18.083 Atomic orbital electron populations 1.22106 0.95329 1.01958 1.02266 1.21297 0.93447 0.98120 0.84222 0.89244 1.20999 0.86871 0.97033 0.93549 1.42379 0.99733 1.70322 1.25317 1.19256 0.89421 1.29509 0.99230 0.91052 1.24748 0.96457 1.01512 0.98022 1.69677 1.07202 1.50730 1.30186 0.86133 0.79935 0.78733 0.81446 1.20533 1.21895 1.21877 1.45887 1.66132 1.14342 1.09111 1.17736 0.77635 0.86307 0.82713 1.90762 1.50907 1.15264 1.85038 1.20729 1.08205 0.95774 0.95269 1.22836 0.90069 0.90514 0.95204 1.66420 1.16921 1.39424 0.96938 1.19169 0.99551 0.91807 0.87552 1.42852 1.56031 1.14125 1.07371 0.73045 1.25495 0.97723 0.80653 0.97795 1.70478 1.18379 1.27592 1.03474 1.19543 1.07313 0.92649 0.93529 1.20840 0.89136 1.00424 0.87725 0.92499 0.91547 0.92337 0.94730 0.95669 0.77977 0.93529 0.76114 0.81003 0.75774 0.82685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.48 37.16 0.35 -1.73 16 2 C 0.13 2.18 2.73 -67.93 -0.19 1.99 16 3 H 0.09 1.66 7.58 -51.93 -0.39 1.26 16 4 C 0.14 2.70 5.82 -4.04 -0.02 2.68 16 5 N -0.73 -17.78 5.43 -59.91 -0.33 -18.11 16 6 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 7 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 8 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 9 N -0.93 -27.84 13.06 55.49 0.72 -27.12 16 10 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 N -0.70 -11.04 4.47 -54.80 -0.24 -11.28 16 15 C 0.57 9.49 7.74 -12.40 -0.10 9.40 16 16 O -0.54 -10.48 16.06 5.30 0.09 -10.40 16 17 C -0.19 -2.86 5.89 -104.85 -0.62 -3.48 16 18 C 0.18 2.54 10.69 -17.09 -0.18 2.36 16 19 N -0.48 -6.88 10.36 -11.96 -0.12 -7.01 16 20 C 0.26 3.37 8.45 -155.64 -1.31 2.05 16 21 N -0.59 -5.07 6.20 -13.22 -0.08 -5.15 16 22 H 0.43 2.22 8.96 -40.82 -0.37 1.86 16 23 C 0.27 2.13 12.97 -89.71 -1.16 0.97 16 24 N -0.48 -5.99 11.29 -12.02 -0.14 -6.12 16 25 C -0.01 -0.16 7.23 -84.69 -0.61 -0.77 16 26 C 0.05 0.69 9.75 -38.58 -0.38 0.31 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.39 10.06 7.33 -40.82 -0.30 9.76 16 33 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.40 5.82 6.64 -40.82 -0.27 5.55 16 35 H 0.17 2.06 6.39 -52.49 -0.34 1.73 16 36 H 0.23 0.49 8.06 -52.48 -0.42 0.06 16 37 H 0.16 2.23 7.72 -52.48 -0.41 1.83 16 LS Contribution 323.52 15.07 4.88 4.88 Total: -1.00 -35.63 323.52 -8.87 -44.50 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -4.15 Total: 12.11 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: -4.47 Total: 6.62 kcal Atomic # 7 Polarization: -74.60 SS G_CDS: -0.19 Total: -74.79 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.63 -8.87 -44.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754269099.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.288 kcal (2) G-P(sol) polarization free energy of solvation -35.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds