Wall clock time and date at job start Tue Mar 31 2020 06:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46926 * 2 1 4 4 C 1.52999 * 109.46644 * 119.99843 * 2 1 3 5 5 N 1.46502 * 109.46873 * 174.99983 * 4 2 1 6 6 C 1.36939 * 119.99922 * 179.97438 * 5 4 2 7 7 H 1.08008 * 120.00049 * 0.02562 * 6 5 4 8 8 C 1.38811 * 120.00094 * 179.97438 * 6 5 4 9 9 N 1.31617 * 120.00199 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00270 * 179.97438 * 8 6 5 11 11 H 1.48509 * 109.46996 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47148 * 119.99927 * 10 8 6 13 13 H 1.48499 * 109.47489 * 240.00559 * 10 8 6 14 14 N 1.46496 * 109.47086 * 239.99677 * 2 1 3 15 15 C 1.34779 * 120.00113 * 85.00519 * 14 2 1 16 16 O 1.21571 * 119.99622 * 359.97438 * 15 14 2 17 17 C 1.47691 * 120.00233 * 179.97438 * 15 14 2 18 18 C 1.39985 * 120.38008 * 0.02562 * 17 15 14 19 19 N 1.31383 * 121.15381 * 180.25833 * 18 17 15 20 20 C 1.32547 * 121.79520 * 359.42574 * 19 18 17 21 21 N 1.37577 * 133.56691 * 180.19781 * 20 19 18 22 22 H 0.97003 * 126.24101 * 0.33365 * 21 20 19 23 23 C 1.36162 * 107.52621 * 180.32948 * 21 20 19 24 24 N 1.30059 * 110.11081 * 0.02562 * 23 21 20 25 25 C 1.35769 * 109.43406 * 0.02562 * 24 23 21 26 26 C 1.39491 * 133.74668 * 179.97438 * 25 24 23 27 27 H 1.08991 * 109.47280 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47138 * 300.00511 * 1 2 3 29 29 H 1.09003 * 109.46522 * 59.99839 * 1 2 3 30 30 H 1.08997 * 109.47429 * 294.99794 * 4 2 1 31 31 H 1.09000 * 109.47508 * 55.00282 * 4 2 1 32 32 H 0.96997 * 119.99902 * 0.02562 * 5 4 2 33 33 H 0.97003 * 120.00347 * 179.97438 * 9 8 6 34 34 H 0.97003 * 120.00322 * 265.00081 * 14 2 1 35 35 H 1.08002 * 119.41990 * 359.97339 * 18 17 15 36 36 H 1.08008 * 124.94854 * 180.02562 * 23 21 20 37 37 H 1.08005 * 120.96882 * 0.02571 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1837 -1.4379 2.2074 7 1 3.6466 -1.8431 3.0523 8 6 5.5671 -1.5381 2.1516 9 7 6.2217 -1.0448 1.1218 10 14 6.5000 -2.3716 3.5388 11 1 5.5395 -2.8372 4.5715 12 1 7.2508 -3.5348 3.0016 13 1 7.4509 -1.4062 4.1461 14 7 2.0183 -0.6907 -1.1961 15 6 2.1472 -0.0184 -2.3571 16 8 1.8577 1.1611 -2.4118 17 6 2.6400 -0.7145 -3.5628 18 6 2.9751 -2.0726 -3.5090 19 7 3.4197 -2.7056 -4.5709 20 6 3.5607 -2.0959 -5.7393 21 7 3.9895 -2.5099 -6.9793 22 1 4.2810 -3.4043 -7.2161 23 6 3.9301 -1.4355 -7.8136 24 7 3.4951 -0.3927 -7.1695 25 6 3.2472 -0.7303 -5.8780 26 6 2.7791 -0.0249 -4.7694 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 1.7516 -0.1583 2.1370 31 1 1.6053 -1.7198 1.2952 32 1 3.9823 -0.4622 0.4320 33 1 7.1884 -1.1144 1.0830 34 1 2.2490 -1.6318 -1.1525 35 1 2.8707 -2.6082 -2.5770 36 1 4.2042 -1.4473 -8.8582 37 1 2.5287 1.0231 -4.8427 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754269099.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:40 Heat of formation + Delta-G solvation = 36.813610 kcal Electronic energy + Delta-G solvation = -22121.217327 eV Core-core repulsion = 18705.721610 eV Total energy + Delta-G solvation = -3415.495716 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.43836 -41.10804 -39.10342 -37.67198 -35.47790 -34.77487 -33.31499 -32.42234 -31.68436 -30.45735 -27.39502 -25.73131 -24.94976 -24.43228 -22.91502 -22.28067 -21.53240 -19.76713 -19.39695 -18.91935 -18.00757 -17.43543 -16.84957 -16.78375 -16.55521 -15.92020 -15.53388 -15.22846 -15.17488 -14.93118 -14.66421 -14.21917 -13.90938 -13.79225 -13.59172 -13.45114 -13.04136 -12.80607 -12.61604 -12.30136 -12.21010 -12.07941 -11.86546 -11.66944 -11.24021 -10.94900 -10.39517 -10.21866 -9.93549 -9.72426 -8.98423 -7.92058 -5.21393 -0.45203 -0.28900 1.49812 1.50491 1.50586 1.60334 1.67262 1.82718 2.08318 2.58159 2.71843 3.03300 3.31992 3.42991 3.58219 3.65635 3.73048 3.85711 4.06049 4.16622 4.26335 4.35193 4.55147 4.66697 4.81581 4.84011 4.89891 4.93096 4.99218 5.16146 5.30003 5.35578 5.53857 5.56849 6.11959 6.28536 6.49566 6.58587 6.68986 7.15301 7.36244 8.10367 8.33400 9.31128 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.015635 B = 0.004177 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.442138 B = 6701.867250 C = 7986.028972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.139 3.861 3 H 0.063 0.937 4 C 0.145 3.855 5 N -0.745 5.745 6 C -0.240 4.240 7 H 0.081 0.919 8 C -0.074 4.074 9 N -0.969 5.969 10 Si 0.971 3.029 11 H -0.263 1.263 12 H -0.295 1.295 13 H -0.299 1.299 14 N -0.698 5.698 15 C 0.571 3.429 16 O -0.576 6.576 17 C -0.200 4.200 18 C 0.176 3.824 19 N -0.492 5.492 20 C 0.242 3.758 21 N -0.574 5.574 22 H 0.448 0.552 23 C 0.307 3.693 24 N -0.525 5.525 25 C -0.024 4.024 26 C 0.031 3.969 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.052 0.948 30 H 0.041 0.959 31 H 0.045 0.955 32 H 0.374 0.626 33 H 0.249 0.751 34 H 0.409 0.591 35 H 0.186 0.814 36 H 0.286 0.714 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.008 -5.435 -17.235 20.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.035 3.965 3 H 0.081 0.919 4 C 0.018 3.982 5 N -0.388 5.388 6 C -0.372 4.372 7 H 0.099 0.901 8 C -0.266 4.266 9 N -0.620 5.620 10 Si 0.800 3.200 11 H -0.187 1.187 12 H -0.222 1.222 13 H -0.227 1.227 14 N -0.349 5.349 15 C 0.358 3.642 16 O -0.457 6.457 17 C -0.208 4.208 18 C 0.007 3.993 19 N -0.205 5.205 20 C 0.004 3.996 21 N -0.190 5.190 22 H 0.292 0.708 23 C 0.020 3.980 24 N -0.245 5.245 25 C -0.143 4.143 26 C 0.004 3.996 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.206 0.794 33 H 0.057 0.943 34 H 0.247 0.753 35 H 0.203 0.797 36 H 0.301 0.699 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.136 -4.736 -17.388 20.205 hybrid contribution 1.258 -0.742 0.733 1.634 sum -7.878 -5.477 -16.655 19.221 Atomic orbital electron populations 1.22015 0.92392 1.03347 1.02780 1.21187 0.95547 0.96311 0.83484 0.91894 1.21165 0.83926 0.98271 0.94843 1.42573 1.01938 1.69962 1.24331 1.19682 0.89803 1.28050 0.99627 0.90096 1.25524 0.97580 1.03111 1.00376 1.69840 1.06887 1.52953 1.32321 0.85111 0.78546 0.77256 0.79047 1.18730 1.22206 1.22669 1.45835 1.65767 1.14553 1.08719 1.17983 0.77015 0.85916 0.83315 1.90732 1.52595 1.16708 1.85632 1.20558 1.09367 0.96268 0.94590 1.22979 0.90296 0.90111 0.95886 1.66463 1.17081 1.39519 0.97399 1.19461 0.99784 0.91816 0.88578 1.42955 1.54996 1.15406 1.05654 0.70845 1.26753 0.93269 0.78804 0.99193 1.70502 1.21223 1.29843 1.02929 1.19691 1.07194 0.93161 0.94223 1.20862 0.90031 1.00323 0.88428 0.90624 0.89947 0.92917 0.94134 0.93700 0.79423 0.94263 0.75335 0.79721 0.69860 0.83485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.48 71.98 0.68 -2.98 16 2 C 0.14 4.52 2.73 44.99 0.12 4.65 16 3 H 0.06 2.40 7.58 -2.39 -0.02 2.38 16 4 C 0.14 5.28 5.82 86.38 0.50 5.78 16 5 N -0.74 -36.12 5.43 -343.45 -1.87 -37.99 16 6 C -0.24 -12.87 9.99 84.03 0.84 -12.03 16 7 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 8 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 9 N -0.97 -59.06 13.06 21.65 0.28 -58.78 16 10 Si 0.97 45.46 29.55 68.60 2.03 47.49 16 11 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 12 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 13 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 14 N -0.70 -22.17 4.47 -445.55 -1.99 -24.16 16 15 C 0.57 19.77 7.74 86.74 0.67 20.44 16 16 O -0.58 -23.41 16.06 -3.94 -0.06 -23.47 16 17 C -0.20 -6.21 5.89 -20.01 -0.12 -6.33 16 18 C 0.18 4.96 10.69 85.18 0.91 5.88 16 19 N -0.49 -13.78 10.36 -191.77 -1.99 -15.77 16 20 C 0.24 6.13 8.45 133.91 1.13 7.27 16 21 N -0.57 -8.29 6.20 -195.74 -1.21 -9.50 16 22 H 0.45 3.13 8.96 -92.71 -0.83 2.30 16 23 C 0.31 3.77 12.97 180.03 2.33 6.10 16 24 N -0.53 -12.36 11.29 -191.94 -2.17 -14.53 16 25 C -0.02 -0.67 7.23 39.46 0.29 -0.38 16 26 C 0.03 0.97 9.75 22.92 0.22 1.19 16 27 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.37 19.87 7.33 -92.71 -0.68 19.19 16 33 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 34 H 0.41 11.83 6.64 -92.71 -0.62 11.22 16 35 H 0.19 4.47 6.39 -2.91 -0.02 4.45 16 36 H 0.29 -0.41 8.06 -2.91 -0.02 -0.43 16 37 H 0.15 4.60 7.72 -2.91 -0.02 4.58 16 Total: -1.00 -78.78 323.52 0.10 -78.69 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: -0.98 Total: 32.12 kcal Atomic # 6 Polarization: 17.85 SS G_CDS: 8.05 Total: 25.90 kcal Atomic # 7 Polarization: -151.79 SS G_CDS: -8.94 Total: -160.73 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.06 Total: -23.47 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -78.78 0.10 -78.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754269099.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.501 kcal (2) G-P(sol) polarization free energy of solvation -78.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds