Wall clock time and date at job start Tue Mar 31 2020 06:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00122 * 2 1 4 4 H 1.48506 * 109.47132 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47636 * 119.99456 * 3 2 1 6 6 H 1.48505 * 109.46926 * 239.99980 * 3 2 1 7 7 C 1.37882 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00073 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99946 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.46920 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47052 * 179.97438 * 10 9 7 12 12 O 1.21287 * 120.00421 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00224 * 179.97438 * 11 10 9 14 14 C 1.39920 * 120.00290 * 175.37784 * 13 11 10 15 15 C 1.38876 * 120.07452 * 214.81292 * 14 13 11 16 16 C 1.38110 * 119.93072 * 179.72364 * 15 14 13 17 17 C 1.38276 * 120.06914 * 0.56975 * 16 15 14 18 18 C 1.50702 * 119.92956 * 179.70377 * 17 16 15 19 19 H 1.08997 * 110.80645 * 183.60650 * 18 17 16 20 20 C 1.54810 * 110.90842 * 59.97852 * 18 17 16 21 21 C 1.54101 * 104.18847 * 220.92608 * 20 18 17 22 22 O 1.43742 * 107.29295 * 357.96649 * 21 20 18 23 23 C 1.44379 * 106.97719 * 26.51630 * 22 21 20 24 24 C 1.38280 * 120.14292 * 359.68105 * 17 16 15 25 25 C 1.38105 * 120.07019 * 0.04882 * 24 17 16 26 26 H 0.97003 * 120.00534 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46724 * 299.99141 * 9 7 2 28 28 H 1.08996 * 109.47579 * 59.99350 * 9 7 2 29 29 H 1.08994 * 109.47459 * 299.99803 * 10 9 7 30 30 H 1.09001 * 109.47695 * 60.00014 * 10 9 7 31 31 H 0.97002 * 119.99615 * 355.38056 * 13 11 10 32 32 H 1.07998 * 120.03008 * 359.97076 * 15 14 13 33 33 H 1.07997 * 119.96352 * 180.30118 * 16 15 14 34 34 H 1.08998 * 110.48652 * 339.60002 * 20 18 17 35 35 H 1.09000 * 110.48622 * 102.24719 * 20 18 17 36 36 H 1.08994 * 109.88356 * 117.39484 * 21 20 18 37 37 H 1.09005 * 109.87556 * 238.54324 * 21 20 18 38 38 H 1.08994 * 110.61824 * 201.43404 * 23 22 21 39 39 H 1.08998 * 110.61636 * 78.43938 * 23 22 21 40 40 H 1.08001 * 119.96501 * 180.02562 * 24 17 16 41 41 H 1.08006 * 120.03471 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9672 0.0012 12 8 0.2788 -4.9673 0.0011 13 7 2.1655 -6.1344 0.0008 14 6 1.4694 -7.3442 0.0990 15 6 2.0247 -8.4124 0.7913 16 6 1.3325 -9.6033 0.8913 17 6 0.0931 -9.7366 0.2929 18 6 -0.6565 -11.0397 0.3983 19 1 -1.5815 -11.0019 -0.1771 20 6 -0.9406 -11.3955 1.8780 21 6 -0.6828 -12.9128 1.9578 22 8 -0.3404 -13.3582 0.6347 23 6 0.2306 -12.2265 -0.0565 24 6 -0.4603 -8.6766 -0.4016 25 6 0.2243 -7.4813 -0.5005 26 1 -0.4851 -0.8400 0.0004 27 1 0.6241 -2.5567 0.8904 28 1 0.6246 -2.5571 -0.8896 29 1 2.8718 -3.6044 -0.8894 30 1 2.8719 -3.6044 0.8905 31 1 3.1331 -6.1357 -0.0676 32 1 2.9950 -8.3105 1.2545 33 1 1.7616 -10.4327 1.4337 34 1 -0.2593 -10.8577 2.5372 35 1 -1.9763 -11.1706 2.1324 36 1 0.1421 -13.1132 2.6414 37 1 -1.5827 -13.4241 2.2997 38 1 0.1652 -12.3631 -1.1359 39 1 1.2652 -12.0718 0.2498 40 1 -1.4288 -8.7837 -0.8675 41 1 -0.2083 -6.6539 -1.0435 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294297708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:30 Heat of formation + Delta-G solvation = -75.140379 kcal Electronic energy + Delta-G solvation = -21780.055507 eV Core-core repulsion = 18430.952693 eV Total energy + Delta-G solvation = -3349.102813 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.61983 -39.77985 -38.20501 -35.02381 -33.87337 -32.80561 -31.07020 -31.00930 -30.00834 -28.01520 -25.35055 -23.77938 -22.83603 -22.61738 -21.82029 -20.55129 -19.85586 -17.73138 -17.20902 -16.89087 -16.57843 -16.13646 -15.54988 -15.22610 -15.02509 -14.37055 -14.22031 -13.81943 -13.71866 -13.54350 -13.47710 -13.12677 -12.79473 -12.57383 -12.26405 -11.88542 -11.77879 -11.54815 -11.41826 -11.32548 -10.93485 -10.86986 -10.20337 -10.19551 -10.15577 -10.00849 -9.99053 -9.42435 -8.97007 -8.60102 -8.33837 -8.02860 -6.36689 -4.07555 1.16614 1.33135 2.90207 3.22936 3.42697 3.44739 3.56486 3.63710 3.71035 4.30945 4.37755 4.53707 4.62326 4.72696 4.75590 4.86041 4.91218 5.04697 5.20847 5.30092 5.34286 5.39720 5.40977 5.44435 5.53842 5.61312 5.63002 5.77608 5.93510 5.97666 5.98690 6.18507 6.33870 6.48793 6.49835 6.54105 6.63215 7.01995 7.43183 7.48124 7.54636 8.12130 8.40774 8.46626 8.86271 9.66170 11.04211 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.052439 B = 0.002401 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.821852 B =11658.117148 C =11865.921471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.015 3.985 3 Si 1.070 2.930 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.610 4.610 8 H 0.050 0.950 9 C 0.024 3.976 10 C -0.122 4.122 11 C 0.509 3.491 12 O -0.516 6.516 13 N -0.686 5.686 14 C 0.155 3.845 15 C -0.149 4.149 16 C -0.098 4.098 17 C -0.102 4.102 18 C -0.077 4.077 19 H 0.092 0.908 20 C -0.150 4.150 21 C 0.046 3.954 22 O -0.380 6.380 23 C 0.054 3.946 24 C -0.093 4.093 25 C -0.120 4.120 26 H 0.272 0.728 27 H 0.015 0.985 28 H 0.015 0.985 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.409 0.591 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.065 0.935 40 H 0.124 0.876 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.524 -24.888 1.724 25.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.189 4.189 3 Si 0.899 3.101 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.649 4.649 8 H 0.068 0.932 9 C -0.014 4.014 10 C -0.162 4.162 11 C 0.299 3.701 12 O -0.390 6.390 13 N -0.332 5.332 14 C 0.060 3.940 15 C -0.169 4.169 16 C -0.117 4.117 17 C -0.103 4.103 18 C -0.095 4.095 19 H 0.111 0.889 20 C -0.188 4.188 21 C -0.031 4.031 22 O -0.299 6.299 23 C -0.023 4.023 24 C -0.112 4.112 25 C -0.140 4.140 26 H 0.083 0.917 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.245 0.755 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.142 0.858 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.424 -23.348 1.656 23.531 hybrid contribution 0.805 -1.443 0.169 1.661 sum 3.229 -24.791 1.824 25.067 Atomic orbital electron populations 1.70741 1.06918 1.30996 1.45832 1.25866 0.96562 1.02741 0.93743 0.83529 0.74858 0.75316 0.76445 1.20734 1.21440 1.21436 1.22007 0.94186 0.91916 1.56752 0.93190 1.19032 0.93795 0.91107 0.97422 1.21767 1.00544 0.90745 1.03119 1.21833 0.88813 0.85506 0.73939 1.90659 1.14392 1.87238 1.46672 1.43910 1.10748 1.04350 1.74159 1.17907 0.93748 0.86025 0.96271 1.20873 1.01474 0.93510 1.01057 1.20664 0.94360 0.96961 0.99692 1.19469 0.95381 0.94774 1.00665 1.21631 0.98881 0.92409 0.96620 0.88938 1.23083 1.03416 0.95870 0.96429 1.23186 1.00432 0.94110 0.85348 1.88870 1.81707 1.33923 1.25419 1.23713 0.96514 0.84054 0.98003 1.20948 0.99560 0.92130 0.98555 1.21383 0.94820 0.98151 0.99673 0.91739 0.96641 0.96633 0.89632 0.89640 0.75523 0.85747 0.86048 0.90107 0.90179 0.92352 0.89849 0.88738 0.91692 0.85841 0.84075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.48 13.65 55.43 0.76 -27.73 16 2 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 3 Si 1.07 25.15 29.90 -169.99 -5.08 20.07 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 6 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.61 -17.27 9.11 -34.44 -0.31 -17.58 16 8 H 0.05 1.34 7.74 -52.49 -0.41 0.94 16 9 C 0.02 0.63 3.57 -27.89 -0.10 0.53 16 10 C -0.12 -2.38 5.64 -27.89 -0.16 -2.54 16 11 C 0.51 9.40 7.67 -10.98 -0.08 9.31 16 12 O -0.52 -11.47 13.42 5.55 0.07 -11.40 16 13 N -0.69 -9.56 5.34 -9.86 -0.05 -9.61 16 14 C 0.16 2.15 6.30 -83.69 -0.53 1.62 16 15 C -0.15 -1.64 9.97 -39.39 -0.39 -2.04 16 16 C -0.10 -0.98 8.19 -39.61 -0.32 -1.30 16 17 C -0.10 -1.05 4.95 -104.59 -0.52 -1.57 16 18 C -0.08 -0.65 3.34 -89.76 -0.30 -0.95 16 19 H 0.09 0.76 7.95 -51.93 -0.41 0.35 16 20 C -0.15 -1.15 6.50 -25.20 -0.16 -1.31 16 21 C 0.05 0.35 7.70 37.73 0.29 0.64 16 22 O -0.38 -3.74 11.52 -35.23 -0.41 -4.15 16 23 C 0.05 0.44 7.10 38.21 0.27 0.71 16 24 C -0.09 -1.12 9.68 -39.61 -0.38 -1.51 16 25 C -0.12 -1.77 8.70 -39.39 -0.34 -2.11 16 26 H 0.27 8.63 7.22 -40.82 -0.29 8.33 16 27 H 0.02 0.44 7.97 -51.93 -0.41 0.02 16 28 H 0.02 0.43 7.97 -51.93 -0.41 0.02 16 29 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 30 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 31 H 0.41 4.22 8.82 -40.82 -0.36 3.86 16 32 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.12 0.95 7.23 -52.49 -0.38 0.57 16 34 H 0.08 0.62 7.21 -51.93 -0.37 0.25 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.50 6.69 -51.93 -0.35 0.15 16 40 H 0.12 1.28 7.98 -52.49 -0.42 0.86 16 41 H 0.14 2.40 6.22 -52.48 -0.33 2.07 16 LS Contribution 338.94 15.07 5.11 5.11 Total: -1.00 -34.26 338.94 -8.65 -42.91 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.90 Total: 2.53 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -3.14 Total: -17.74 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.70 Total: -37.34 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.33 Total: -15.54 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.08 Total: 20.07 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.26 -8.65 -42.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294297708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.228 kcal (2) G-P(sol) polarization free energy of solvation -34.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds