Wall clock time and date at job start Tue Mar 31 2020 06:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00122 * 2 1 4 4 H 1.48506 * 109.47132 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47636 * 119.99456 * 3 2 1 6 6 H 1.48505 * 109.46926 * 239.99980 * 3 2 1 7 7 C 1.37882 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00073 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99946 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.46920 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47052 * 179.97438 * 10 9 7 12 12 O 1.21287 * 120.00421 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00224 * 179.97438 * 11 10 9 14 14 C 1.39920 * 120.00290 * 175.37784 * 13 11 10 15 15 C 1.38876 * 120.07452 * 214.81292 * 14 13 11 16 16 C 1.38110 * 119.93072 * 179.72364 * 15 14 13 17 17 C 1.38276 * 120.06914 * 0.56975 * 16 15 14 18 18 C 1.50702 * 119.92956 * 179.70377 * 17 16 15 19 19 H 1.08997 * 110.80645 * 183.60650 * 18 17 16 20 20 C 1.54810 * 110.90842 * 59.97852 * 18 17 16 21 21 C 1.54101 * 104.18847 * 220.92608 * 20 18 17 22 22 O 1.43742 * 107.29295 * 357.96649 * 21 20 18 23 23 C 1.44379 * 106.97719 * 26.51630 * 22 21 20 24 24 C 1.38280 * 120.14292 * 359.68105 * 17 16 15 25 25 C 1.38105 * 120.07019 * 0.04882 * 24 17 16 26 26 H 0.97003 * 120.00534 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46724 * 299.99141 * 9 7 2 28 28 H 1.08996 * 109.47579 * 59.99350 * 9 7 2 29 29 H 1.08994 * 109.47459 * 299.99803 * 10 9 7 30 30 H 1.09001 * 109.47695 * 60.00014 * 10 9 7 31 31 H 0.97002 * 119.99615 * 355.38056 * 13 11 10 32 32 H 1.07998 * 120.03008 * 359.97076 * 15 14 13 33 33 H 1.07997 * 119.96352 * 180.30118 * 16 15 14 34 34 H 1.08998 * 110.48652 * 339.60002 * 20 18 17 35 35 H 1.09000 * 110.48622 * 102.24719 * 20 18 17 36 36 H 1.08994 * 109.88356 * 117.39484 * 21 20 18 37 37 H 1.09005 * 109.87556 * 238.54324 * 21 20 18 38 38 H 1.08994 * 110.61824 * 201.43404 * 23 22 21 39 39 H 1.08998 * 110.61636 * 78.43938 * 23 22 21 40 40 H 1.08001 * 119.96501 * 180.02562 * 24 17 16 41 41 H 1.08006 * 120.03471 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9672 0.0012 12 8 0.2788 -4.9673 0.0011 13 7 2.1655 -6.1344 0.0008 14 6 1.4694 -7.3442 0.0990 15 6 2.0247 -8.4124 0.7913 16 6 1.3325 -9.6033 0.8913 17 6 0.0931 -9.7366 0.2929 18 6 -0.6565 -11.0397 0.3983 19 1 -1.5815 -11.0019 -0.1771 20 6 -0.9406 -11.3955 1.8780 21 6 -0.6828 -12.9128 1.9578 22 8 -0.3404 -13.3582 0.6347 23 6 0.2306 -12.2265 -0.0565 24 6 -0.4603 -8.6766 -0.4016 25 6 0.2243 -7.4813 -0.5005 26 1 -0.4851 -0.8400 0.0004 27 1 0.6241 -2.5567 0.8904 28 1 0.6246 -2.5571 -0.8896 29 1 2.8718 -3.6044 -0.8894 30 1 2.8719 -3.6044 0.8905 31 1 3.1331 -6.1357 -0.0676 32 1 2.9950 -8.3105 1.2545 33 1 1.7616 -10.4327 1.4337 34 1 -0.2593 -10.8577 2.5372 35 1 -1.9763 -11.1706 2.1324 36 1 0.1421 -13.1132 2.6414 37 1 -1.5827 -13.4241 2.2997 38 1 0.1652 -12.3631 -1.1359 39 1 1.2652 -12.0718 0.2498 40 1 -1.4288 -8.7837 -0.8675 41 1 -0.2083 -6.6539 -1.0435 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294297708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:29 Heat of formation + Delta-G solvation = -97.488410 kcal Electronic energy + Delta-G solvation = -21781.024590 eV Core-core repulsion = 18430.952693 eV Total energy + Delta-G solvation = -3350.071897 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.70926 -40.71761 -39.22644 -36.26289 -35.89330 -33.77855 -32.80378 -31.97181 -30.77176 -29.00236 -27.17475 -24.93953 -23.95982 -23.61450 -22.99973 -21.64103 -21.05221 -19.07384 -18.82452 -17.94996 -17.49074 -17.30490 -16.79077 -16.10398 -15.90216 -15.71980 -15.59014 -15.39215 -14.75875 -14.59483 -14.42327 -14.21688 -14.18863 -13.91254 -13.60915 -13.44202 -12.70919 -12.62636 -12.51228 -12.19746 -12.16216 -12.11714 -12.05387 -11.87943 -11.60822 -11.23609 -10.93678 -10.70352 -10.63752 -10.56416 -9.92148 -9.05842 -8.70819 -6.43119 0.18644 0.39964 1.50872 1.54087 1.63863 1.82181 2.02104 2.59311 2.71743 2.99604 3.15537 3.64758 3.67297 3.77596 3.95620 3.99893 4.02956 4.14194 4.26697 4.30061 4.33758 4.35174 4.42277 4.56854 4.61173 4.78704 4.85072 4.87230 4.87553 5.03188 5.04782 5.12198 5.24189 5.27618 5.33188 5.36122 5.49576 5.61625 5.89288 5.91106 6.01977 6.15687 6.38610 6.50175 7.10322 7.42910 8.69113 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.052439 B = 0.002401 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.821852 B =11658.117148 C =11865.921471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.046 4.046 3 Si 1.124 2.876 4 H -0.289 1.289 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.619 4.619 8 H 0.069 0.931 9 C 0.026 3.974 10 C -0.111 4.111 11 C 0.511 3.489 12 O -0.566 6.566 13 N -0.662 5.662 14 C 0.127 3.873 15 C -0.137 4.137 16 C -0.093 4.093 17 C -0.090 4.090 18 C -0.077 4.077 19 H 0.092 0.908 20 C -0.148 4.148 21 C 0.044 3.956 22 O -0.401 6.401 23 C 0.054 3.946 24 C -0.103 4.103 25 C -0.147 4.147 26 H 0.251 0.749 27 H -0.020 1.020 28 H -0.020 1.020 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.429 0.571 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.131 0.869 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.376 -26.587 2.675 27.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.243 4.243 3 Si 0.944 3.056 4 H -0.215 1.215 5 H -0.188 1.188 6 H -0.188 1.188 7 C -0.657 4.657 8 H 0.087 0.913 9 C -0.012 4.012 10 C -0.150 4.150 11 C 0.301 3.699 12 O -0.443 6.443 13 N -0.309 5.309 14 C 0.033 3.967 15 C -0.157 4.157 16 C -0.111 4.111 17 C -0.091 4.091 18 C -0.096 4.096 19 H 0.111 0.889 20 C -0.186 4.186 21 C -0.033 4.033 22 O -0.321 6.321 23 C -0.022 4.022 24 C -0.122 4.122 25 C -0.167 4.167 26 H 0.061 0.939 27 H -0.002 1.002 28 H -0.001 1.001 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.268 0.732 32 H 0.172 0.828 33 H 0.171 0.829 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.094 0.906 40 H 0.149 0.851 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.335 -25.118 2.606 25.810 hybrid contribution -0.121 -1.079 -0.120 1.093 sum 5.213 -26.197 2.485 26.826 Atomic orbital electron populations 1.70900 1.08399 1.29750 1.48698 1.27676 0.96509 1.07507 0.92613 0.82870 0.73986 0.70333 0.78393 1.21467 1.18804 1.18824 1.22497 0.95291 0.92609 1.55262 0.91267 1.18869 0.94383 0.93828 0.94079 1.21535 0.99082 0.88966 1.05433 1.21541 0.88039 0.86524 0.73803 1.90659 1.16419 1.87954 1.49308 1.43485 1.11546 1.03256 1.72618 1.18102 0.93945 0.86550 0.98151 1.21168 1.02403 0.92513 0.99572 1.21045 0.93800 0.97395 0.98882 1.19675 0.95558 0.94751 0.99079 1.21639 0.98849 0.91512 0.97550 0.88942 1.23079 1.03781 0.96139 0.95554 1.23312 1.01415 0.93834 0.84690 1.88855 1.81988 1.34700 1.26508 1.23769 0.96771 0.83347 0.98312 1.21070 0.99986 0.91910 0.99229 1.21264 0.96086 0.98277 1.01068 0.93929 1.00215 1.00145 0.87209 0.87226 0.73205 0.82774 0.82906 0.89773 0.89871 0.91099 0.88971 0.88311 0.90634 0.85113 0.87613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.14 13.65 21.45 0.29 -60.84 16 2 C -0.05 -2.74 5.46 84.66 0.46 -2.28 16 3 Si 1.12 49.90 29.90 68.60 2.05 51.95 16 4 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 5 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 6 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 7 C -0.62 -35.19 9.11 25.60 0.23 -34.95 16 8 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 9 C 0.03 1.42 3.57 29.85 0.11 1.52 16 10 C -0.11 -4.29 5.64 29.85 0.17 -4.12 16 11 C 0.51 19.25 7.67 87.66 0.67 19.93 16 12 O -0.57 -26.83 13.42 -3.05 -0.04 -26.87 16 13 N -0.66 -17.87 5.34 -303.50 -1.62 -19.49 16 14 C 0.13 3.40 6.30 38.16 0.24 3.64 16 15 C -0.14 -2.62 9.97 22.39 0.22 -2.40 16 16 C -0.09 -1.54 8.19 22.25 0.18 -1.36 16 17 C -0.09 -1.69 4.95 -19.84 -0.10 -1.78 16 18 C -0.08 -1.15 3.34 -10.24 -0.03 -1.18 16 19 H 0.09 1.39 7.95 -2.39 -0.02 1.37 16 20 C -0.15 -1.89 6.50 31.58 0.21 -1.69 16 21 C 0.04 0.54 7.70 72.35 0.56 1.10 16 22 O -0.40 -6.97 11.52 -148.98 -1.72 -8.68 16 23 C 0.05 0.76 7.10 72.67 0.52 1.28 16 24 C -0.10 -2.51 9.68 22.25 0.22 -2.29 16 25 C -0.15 -4.49 8.70 22.39 0.19 -4.30 16 26 H 0.25 16.99 7.22 -92.71 -0.67 16.32 16 27 H -0.02 -1.25 7.97 -2.39 -0.02 -1.27 16 28 H -0.02 -1.21 7.97 -2.39 -0.02 -1.22 16 29 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 30 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 31 H 0.43 7.82 8.82 -92.71 -0.82 7.00 16 32 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 33 H 0.15 1.63 7.23 -2.91 -0.02 1.61 16 34 H 0.08 1.03 7.21 -2.39 -0.02 1.01 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.08 0.89 6.69 -2.39 -0.02 0.88 16 40 H 0.13 2.82 7.98 -2.91 -0.02 2.79 16 41 H 0.11 3.97 6.22 -2.91 -0.02 3.95 16 Total: -1.00 -78.76 338.94 3.13 -75.63 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.32 Total: 17.18 kcal Atomic # 6 Polarization: -32.72 SS G_CDS: 3.84 Total: -28.87 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -1.33 Total: -80.33 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -1.76 Total: -35.56 kcal Atomic # 14 Polarization: 49.90 SS G_CDS: 2.05 Total: 51.95 kcal Total: -78.76 3.13 -75.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294297708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.862 kcal (2) G-P(sol) polarization free energy of solvation -78.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds