Wall clock time and date at job start Tue Mar 31 2020 06:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30648 * 1 3 3 Si 1.86797 * 120.00015 * 2 1 4 4 H 1.48497 * 109.47228 * 239.99786 * 3 2 1 5 5 H 1.48500 * 109.47430 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47117 * 120.00067 * 3 2 1 7 7 C 1.40229 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00518 * 188.59166 * 7 2 1 9 9 C 1.41115 * 119.99889 * 8.32304 * 7 2 1 10 10 C 1.40881 * 120.10053 * 208.01230 * 9 7 2 11 11 C 1.36324 * 119.88941 * 179.71343 * 10 9 7 12 12 C 1.40017 * 120.10421 * 0.54205 * 11 10 9 13 13 C 1.47645 * 119.89303 * 179.73668 * 12 11 10 14 14 O 1.21582 * 119.99367 * 196.95037 * 13 12 11 15 15 N 1.34776 * 119.99976 * 16.95202 * 13 12 11 16 16 C 1.47420 * 125.65046 * 4.04299 * 15 13 12 17 17 C 1.54907 * 104.83541 * 155.83101 * 16 15 13 18 18 C 1.55164 * 101.57766 * 37.00922 * 17 16 15 19 19 C 1.47023 * 125.64453 * 183.73224 * 15 13 12 20 20 H 1.09005 * 109.88078 * 300.51169 * 19 15 13 21 21 C 1.52994 * 109.88521 * 61.67967 * 19 15 13 22 22 C 1.53003 * 109.46943 * 301.92702 * 21 19 15 23 23 O 1.42902 * 109.46745 * 187.33039 * 22 21 19 24 24 C 1.40009 * 120.21075 * 359.75336 * 12 11 10 25 25 C 1.36324 * 120.10564 * 359.96126 * 24 12 11 26 26 H 0.96991 * 119.99914 * 0.02562 * 1 2 3 27 27 H 1.08004 * 120.05979 * 359.97438 * 10 9 7 28 28 H 1.07994 * 119.94546 * 180.29570 * 11 10 9 29 29 H 1.09001 * 110.36559 * 274.67312 * 16 15 13 30 30 H 1.09004 * 110.36905 * 36.88492 * 16 15 13 31 31 H 1.09001 * 111.00812 * 155.08079 * 17 16 15 32 32 H 1.08994 * 111.00582 * 278.93838 * 17 16 15 33 33 H 1.08998 * 110.71790 * 82.86567 * 18 17 16 34 34 H 1.09001 * 110.71481 * 205.95627 * 18 17 16 35 35 H 1.08998 * 109.47007 * 61.92538 * 21 19 15 36 36 H 1.08996 * 109.47521 * 181.92834 * 21 19 15 37 37 H 1.08998 * 109.47208 * 307.33185 * 22 21 19 38 38 H 1.08998 * 109.46945 * 67.33432 * 22 21 19 39 39 H 0.96708 * 113.99850 * 180.02562 * 23 22 21 40 40 H 1.07999 * 119.95270 * 179.97438 * 24 12 11 41 41 H 1.08002 * 120.05444 * 180.02562 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.0943 1.6964 -1.2124 5 1 1.2755 2.7465 0.0006 6 1 3.0943 1.6964 1.2125 7 6 2.0076 -1.2144 0.0005 8 1 3.0785 -1.2197 0.1403 9 6 1.3132 -2.4301 -0.1758 10 6 1.8207 -3.6208 0.3804 11 6 1.1433 -4.7919 0.2124 12 6 -0.0491 -4.8144 -0.5213 13 6 -0.7759 -6.0863 -0.7053 14 8 -1.6203 -6.1835 -1.5747 15 7 -0.5033 -7.1394 0.0903 16 6 0.4301 -7.1353 1.2314 17 6 -0.0567 -8.2867 2.1462 18 6 -0.5047 -9.3448 1.1034 19 6 -1.0926 -8.4808 -0.0320 20 1 -2.1763 -8.4203 0.0689 21 6 -0.7264 -9.0884 -1.3875 22 6 -1.2225 -8.1721 -2.5079 23 8 -1.0343 -8.8171 -3.7691 24 6 -0.5541 -3.6347 -1.0812 25 6 0.1133 -2.4579 -0.9136 26 1 -0.4849 0.8400 -0.0004 27 1 2.7427 -3.6053 0.9427 28 1 1.5290 -5.7043 0.6424 29 1 1.4475 -7.3264 0.8899 30 1 0.3804 -6.1827 1.7588 31 1 0.7576 -8.6666 2.7631 32 1 -0.8961 -7.9670 2.7635 33 1 0.3488 -9.9235 0.7502 34 1 -1.2668 -10.0013 1.5232 35 1 0.3562 -9.1945 -1.4575 36 1 -1.1945 -10.0679 -1.4851 37 1 -2.2819 -7.9610 -2.3623 38 1 -0.6601 -7.2386 -2.4896 39 1 -1.3271 -8.2923 -4.5268 40 1 -1.4740 -3.6569 -1.6467 41 1 -0.2773 -1.5483 -1.3455 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428627770.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:49 Heat of formation + Delta-G solvation = -40.331863 kcal Electronic energy + Delta-G solvation = -23210.444128 eV Core-core repulsion = 19862.850725 eV Total energy + Delta-G solvation = -3347.593403 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.25800 -37.65827 -36.86960 -36.25806 -33.95780 -32.21942 -31.36713 -29.98710 -29.37825 -27.18578 -25.96979 -23.73704 -22.21032 -21.60407 -20.89769 -20.29744 -18.65970 -17.61349 -17.34178 -16.74208 -16.05216 -15.39497 -14.86107 -14.82906 -14.26249 -13.93751 -13.65021 -13.39289 -13.12964 -13.09093 -12.80427 -12.60374 -12.33348 -12.14299 -11.82752 -11.49698 -11.44287 -11.31826 -11.07479 -11.01670 -10.89354 -10.76864 -10.63334 -10.38277 -9.88273 -9.47908 -9.42079 -9.30028 -8.88556 -8.10356 -7.69081 -7.50335 -6.93745 -4.62494 2.20946 2.92992 2.95275 2.97830 3.01734 3.44749 3.73636 3.79490 4.37434 4.53687 4.56503 4.75622 4.97112 5.22262 5.38181 5.43187 5.52042 5.54310 5.65613 5.73349 5.83488 5.85449 5.89796 5.97318 6.10760 6.12885 6.18165 6.26213 6.42585 6.53906 6.72949 6.82128 6.87197 7.05643 7.12818 7.44811 7.60010 7.81767 7.86603 7.99153 8.04311 8.14869 8.44509 8.64455 8.75465 8.93621 9.95614 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025008 B = 0.003982 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.371718 B = 7029.711271 C = 7718.147963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.071 3.929 3 Si 0.917 3.083 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.445 4.445 8 H 0.082 0.918 9 C 0.127 3.873 10 C -0.233 4.233 11 C -0.074 4.074 12 C -0.274 4.274 13 C 0.578 3.422 14 O -0.556 6.556 15 N -0.619 5.619 16 C 0.099 3.901 17 C -0.137 4.137 18 C -0.126 4.126 19 C 0.140 3.860 20 H 0.072 0.928 21 C -0.124 4.124 22 C 0.066 3.934 23 O -0.597 6.597 24 C -0.041 4.041 25 C -0.176 4.176 26 H 0.286 0.714 27 H 0.096 0.904 28 H 0.112 0.888 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.084 0.916 39 H 0.375 0.625 40 H 0.098 0.902 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.189 -10.742 3.000 11.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.149 4.149 3 Si 0.741 3.259 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.473 4.473 8 H 0.100 0.900 9 C 0.123 3.877 10 C -0.253 4.253 11 C -0.092 4.092 12 C -0.279 4.279 13 C 0.376 3.624 14 O -0.439 6.439 15 N -0.354 5.354 16 C -0.024 4.024 17 C -0.175 4.175 18 C -0.164 4.164 19 C 0.036 3.964 20 H 0.090 0.910 21 C -0.163 4.163 22 C -0.010 4.010 23 O -0.403 6.403 24 C -0.060 4.060 25 C -0.195 4.195 26 H 0.097 0.903 27 H 0.115 0.885 28 H 0.130 0.870 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.221 0.779 40 H 0.116 0.884 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.245 -11.018 2.905 11.397 hybrid contribution 0.099 1.197 -0.176 1.214 sum -0.145 -9.821 2.728 10.194 Atomic orbital electron populations 1.69699 1.07726 1.29874 1.33239 1.26080 0.94933 1.01773 0.92107 0.86206 0.80007 0.79495 0.80172 1.18595 1.20069 1.18762 1.19797 0.95763 0.90392 1.41357 0.89977 1.17832 0.91249 0.92111 0.86462 1.20749 1.02688 0.93597 1.08261 1.21178 0.94256 0.97658 0.96107 1.18863 1.01162 0.92041 1.15792 1.18280 0.82153 0.82711 0.79207 1.90640 1.35746 1.82886 1.34636 1.48388 1.44965 1.09970 1.32091 1.22667 0.92919 0.99709 0.87099 1.22873 1.01693 0.95652 0.97324 1.22676 1.01262 0.97308 0.95184 1.21442 0.97990 0.82827 0.94119 0.91015 1.21995 1.01607 0.99251 0.93446 1.23439 1.01149 0.94855 0.81586 1.86309 1.87895 1.48929 1.17203 1.20491 0.97653 0.91774 0.96100 1.21165 0.98544 0.96832 1.02952 0.90289 0.88549 0.87029 0.91414 0.89112 0.90007 0.90636 0.90495 0.90336 0.91703 0.91278 0.92862 0.89862 0.77881 0.88374 0.85537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.08 10.67 55.56 0.59 -18.48 16 2 C 0.07 1.67 5.30 -17.31 -0.09 1.57 16 3 Si 0.92 17.46 29.57 -169.99 -5.03 12.44 16 4 H -0.26 -4.95 7.11 56.52 0.40 -4.54 16 5 H -0.28 -5.14 7.11 56.52 0.40 -4.73 16 6 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 7 C -0.44 -11.02 9.06 -37.74 -0.34 -11.36 16 8 H 0.08 1.92 7.86 -52.49 -0.41 1.51 16 9 C 0.13 3.20 5.57 -106.80 -0.60 2.60 16 10 C -0.23 -5.32 9.73 -39.27 -0.38 -5.70 16 11 C -0.07 -1.54 8.04 -39.60 -0.32 -1.86 16 12 C -0.27 -6.14 5.82 -104.73 -0.61 -6.75 16 13 C 0.58 11.89 6.48 -12.42 -0.08 11.81 16 14 O -0.56 -12.25 11.64 5.29 0.06 -12.19 16 15 N -0.62 -10.25 3.07 -164.20 -0.50 -10.75 16 16 C 0.10 1.34 4.92 -2.53 -0.01 1.33 16 17 C -0.14 -1.39 7.08 -24.58 -0.17 -1.57 16 18 C -0.13 -1.28 6.47 -24.90 -0.16 -1.44 16 19 C 0.14 1.95 3.21 -66.96 -0.21 1.74 16 20 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 21 C -0.12 -1.83 5.21 -26.73 -0.14 -1.97 16 22 C 0.07 1.14 5.10 37.16 0.19 1.33 16 23 O -0.60 -9.80 13.66 -35.23 -0.48 -10.28 16 24 C -0.04 -0.98 9.52 -39.61 -0.38 -1.36 16 25 C -0.18 -4.45 8.61 -39.27 -0.34 -4.79 16 26 H 0.29 6.34 8.29 -40.82 -0.34 6.00 16 27 H 0.10 2.02 8.06 -52.48 -0.42 1.60 16 28 H 0.11 1.95 3.81 -52.49 -0.20 1.75 16 29 H 0.07 0.87 7.11 -51.93 -0.37 0.50 16 30 H 0.09 1.34 6.25 -51.93 -0.32 1.02 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.72 7.82 -51.93 -0.41 0.31 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.98 7.12 -51.93 -0.37 0.61 16 38 H 0.08 1.68 4.75 -54.16 -0.26 1.43 16 39 H 0.38 4.74 9.12 45.56 0.42 5.16 16 40 H 0.10 2.31 7.73 -52.49 -0.41 1.90 16 41 H 0.13 3.30 6.07 -52.49 -0.32 2.98 16 LS Contribution 322.84 15.07 4.87 4.87 Total: -1.00 -28.52 322.84 -8.88 -37.39 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -4.74 Total: 13.42 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -3.65 Total: -16.41 kcal Atomic # 7 Polarization: -29.32 SS G_CDS: 0.09 Total: -29.23 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.42 Total: -22.47 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.44 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.52 -8.88 -37.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428627770.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.938 kcal (2) G-P(sol) polarization free energy of solvation -28.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds