Wall clock time and date at job start Tue Mar 31 2020 05:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00235 * 2 1 4 4 H 1.48496 * 109.47259 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46973 * 299.99911 * 3 2 1 6 6 H 1.48505 * 109.47314 * 59.99720 * 3 2 1 7 7 C 1.37871 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00241 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47219 * 180.02562 * 9 7 2 11 11 N 1.46495 * 109.47307 * 180.02562 * 10 9 7 12 12 C 1.34776 * 120.00510 * 179.97438 * 11 10 9 13 13 O 1.21287 * 119.99592 * 359.97438 * 12 11 10 14 14 C 1.50691 * 120.00424 * 180.02562 * 12 11 10 15 15 C 1.50705 * 109.89666 * 275.51867 * 14 12 11 16 16 C 1.38232 * 120.00103 * 269.20411 * 15 14 12 17 17 C 1.38234 * 120.00004 * 179.76245 * 16 15 14 18 18 C 1.38237 * 119.99739 * 0.51576 * 17 16 15 19 19 C 1.38233 * 120.00095 * 359.73907 * 18 17 16 20 20 C 1.38233 * 120.00069 * 0.02562 * 19 18 17 21 21 C 1.54383 * 109.83304 * 154.58616 * 14 12 11 22 22 C 1.55566 * 102.27674 * 261.84122 * 21 14 12 23 23 C 1.54944 * 100.82489 * 325.88222 * 22 21 14 24 24 O 1.43235 * 109.83446 * 36.45273 * 14 12 11 25 25 H 0.97001 * 119.99518 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47437 * 60.00229 * 9 7 2 27 27 H 1.08996 * 109.47536 * 299.99714 * 9 7 2 28 28 H 1.08993 * 109.47347 * 60.00064 * 10 9 7 29 29 H 1.09004 * 109.46931 * 300.00161 * 10 9 7 30 30 H 0.97003 * 120.00143 * 359.97438 * 11 10 9 31 31 H 1.08003 * 119.99685 * 0.02562 * 16 15 14 32 32 H 1.07998 * 120.00372 * 180.23004 * 17 16 15 33 33 H 1.08004 * 119.99404 * 179.72243 * 18 17 16 34 34 H 1.08004 * 120.00127 * 179.97438 * 19 18 17 35 35 H 1.08005 * 120.00098 * 179.97438 * 20 19 18 36 36 H 1.09007 * 110.84628 * 20.03551 * 21 14 12 37 37 H 1.09002 * 110.85103 * 143.44492 * 21 14 12 38 38 H 1.08997 * 111.22347 * 207.97660 * 22 21 14 39 39 H 1.09003 * 111.13190 * 83.74257 * 22 21 14 40 40 H 1.09002 * 110.30953 * 277.47426 * 23 22 21 41 41 H 1.09000 * 110.30834 * 155.40499 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5127 -4.9308 0.0012 12 6 2.1865 -6.0981 0.0016 13 8 3.3993 -6.0981 0.0020 14 6 1.4330 -7.4031 0.0004 15 6 1.0569 -7.7795 1.4104 16 6 1.9088 -8.5617 2.1675 17 6 1.5661 -8.9029 3.4625 18 6 0.3666 -8.4707 3.9967 19 6 -0.4877 -7.6929 3.2378 20 6 -0.1427 -7.3476 1.9444 21 6 2.3077 -8.5124 -0.6222 22 6 1.7787 -8.5695 -2.0840 23 6 0.2790 -8.2486 -1.8635 24 8 0.2523 -7.2818 -0.8014 25 1 -0.4849 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8711 -3.6040 0.8922 29 1 2.8725 -3.6047 -0.8877 30 1 0.5427 -4.9308 0.0005 31 1 2.8441 -8.9028 1.7487 32 1 2.2333 -9.5110 4.0554 33 1 0.0969 -8.7411 5.0070 34 1 -1.4250 -7.3555 3.6550 35 1 -0.8104 -6.7402 1.3513 36 1 3.3612 -8.2330 -0.6016 37 1 2.1503 -9.4627 -0.1121 38 1 1.9091 -9.5633 -2.5123 39 1 2.2557 -7.8107 -2.7045 40 1 -0.2612 -9.1486 -1.5695 41 1 -0.1550 -7.8269 -2.7701 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935338607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:54 Heat of formation + Delta-G solvation = -66.250894 kcal Electronic energy + Delta-G solvation = -23032.221103 eV Core-core repulsion = 19683.503766 eV Total energy + Delta-G solvation = -3348.717336 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.91023 -38.65418 -38.08374 -34.91907 -32.89388 -32.60230 -32.00951 -30.82641 -29.64102 -28.19683 -25.07060 -23.68598 -22.98168 -21.93873 -21.43518 -20.79738 -19.61601 -17.80517 -17.34803 -16.39536 -16.03240 -15.74127 -15.21965 -14.80910 -14.76420 -14.55412 -14.35794 -13.99862 -13.61270 -13.41087 -13.24387 -12.82918 -12.61069 -12.30426 -12.07217 -11.95981 -11.41590 -11.35329 -11.17262 -11.03652 -11.00445 -10.91205 -10.61376 -10.40143 -10.30519 -9.68427 -9.39073 -9.19213 -8.94603 -8.69417 -8.50971 -8.31914 -6.06788 -4.09556 1.21909 1.37311 2.90405 3.29791 3.37097 3.41938 3.48981 3.56316 3.84437 4.33781 4.43465 4.48607 4.77617 4.88273 4.91384 4.99279 5.06658 5.12636 5.25942 5.30193 5.42136 5.50898 5.55697 5.58713 5.60826 5.85370 5.88132 5.96406 6.00157 6.35081 6.36887 6.39888 6.43538 6.46924 6.74709 6.79372 6.92405 6.97510 7.55419 7.65505 7.91375 8.05379 8.29954 8.63191 8.96569 9.55083 11.04860 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017349 B = 0.004029 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.548312 B = 6947.237107 C = 7649.897016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.120 3.880 11 N -0.704 5.704 12 C 0.516 3.484 13 O -0.546 6.546 14 C 0.134 3.866 15 C -0.092 4.092 16 C -0.104 4.104 17 C -0.124 4.124 18 C -0.117 4.117 19 C -0.122 4.122 20 C -0.088 4.088 21 C -0.139 4.139 22 C -0.156 4.156 23 C 0.051 3.949 24 O -0.360 6.360 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.403 0.597 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.200 -21.538 1.630 21.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.002 4.002 11 N -0.352 5.352 12 C 0.299 3.701 13 O -0.425 6.425 14 C 0.092 3.908 15 C -0.093 4.093 16 C -0.122 4.122 17 C -0.142 4.142 18 C -0.135 4.135 19 C -0.140 4.140 20 C -0.106 4.106 21 C -0.176 4.176 22 C -0.194 4.194 23 C -0.026 4.026 24 O -0.279 6.279 25 H 0.071 0.929 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.237 0.763 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.123 0.877 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.649 -21.224 1.659 21.299 hybrid contribution -0.001 0.866 0.005 0.866 sum -0.651 -20.358 1.664 20.436 Atomic orbital electron populations 1.69975 1.06074 1.26706 1.50484 1.24993 0.94883 0.99373 0.95028 0.86467 0.80166 0.83394 0.77603 1.19600 1.20936 1.20944 1.21087 0.93246 0.90380 1.51180 0.92234 1.19325 0.94186 0.91037 0.97930 1.21769 0.96119 0.81606 1.00726 1.46248 1.10974 1.06145 1.71857 1.20236 0.87775 0.85237 0.76842 1.90659 1.13416 1.87159 1.51259 1.20956 0.85934 0.94307 0.89645 1.19725 0.95898 0.99260 0.94383 1.21039 0.99188 0.97554 0.94418 1.21088 0.97074 1.00805 0.95258 1.21194 0.94562 0.98015 0.99733 1.21178 0.99992 0.98560 0.94260 1.21052 0.95990 0.98440 0.95158 1.23248 1.01950 0.97474 0.94955 1.23333 0.95761 1.03240 0.97055 1.23445 0.96353 0.92347 0.90410 1.88435 1.39751 1.57460 1.42302 0.92925 0.95853 0.95917 0.92539 0.92534 0.76308 0.85646 0.85948 0.86103 0.85777 0.85188 0.87713 0.89546 0.89505 0.89994 0.91873 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.12 2.67 5.61 -4.04 -0.02 2.65 16 11 N -0.70 -13.50 5.47 -60.30 -0.33 -13.83 16 12 C 0.52 9.42 6.74 -10.99 -0.07 9.34 16 13 O -0.55 -11.41 15.56 5.55 0.09 -11.32 16 14 C 0.13 1.92 0.98 -92.20 -0.09 1.83 16 15 C -0.09 -1.26 4.81 -104.62 -0.50 -1.76 16 16 C -0.10 -1.28 8.75 -39.58 -0.35 -1.63 16 17 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 18 C -0.12 -1.25 10.05 -39.58 -0.40 -1.64 16 19 C -0.12 -1.41 10.05 -39.59 -0.40 -1.81 16 20 C -0.09 -1.17 9.36 -39.58 -0.37 -1.54 16 21 C -0.14 -1.62 5.00 -24.64 -0.12 -1.75 16 22 C -0.16 -1.55 7.18 -24.34 -0.17 -1.72 16 23 C 0.05 0.52 7.77 38.18 0.30 0.82 16 24 O -0.36 -4.91 9.10 -35.23 -0.32 -5.23 16 25 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.40 7.20 7.97 -40.82 -0.33 6.88 16 31 H 0.13 1.40 6.82 -52.48 -0.36 1.04 16 32 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 34 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 35 H 0.13 1.70 7.54 -52.48 -0.40 1.30 16 36 H 0.10 1.37 6.76 -51.93 -0.35 1.02 16 37 H 0.09 0.84 6.85 -51.93 -0.36 0.49 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 341.56 15.07 5.15 5.15 Total: -1.00 -32.29 341.56 -8.83 -41.13 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -5.98 Total: 5.45 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -3.15 Total: -12.22 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.41 Total: -39.54 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.23 Total: -16.56 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.29 -8.83 -41.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935338607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.125 kcal (2) G-P(sol) polarization free energy of solvation -32.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds