Wall clock time and date at job start Tue Mar 31 2020 05:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99785 * 2 1 4 4 H 1.48494 * 109.47345 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47100 * 299.99926 * 3 2 1 6 6 H 1.48502 * 109.47199 * 59.99433 * 3 2 1 7 7 C 1.37875 * 120.00741 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00619 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99494 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47118 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00087 * 275.80191 * 10 9 7 12 12 C 1.50706 * 109.47096 * 267.65702 * 11 10 9 13 13 C 1.34507 * 125.78607 * 89.71451 * 12 11 10 14 14 C 1.41384 * 106.83923 * 179.89069 * 13 12 11 15 15 C 1.34520 * 106.83935 * 0.37303 * 14 13 12 16 16 O 1.34302 * 125.78728 * 270.02575 * 12 11 10 17 17 C 1.34781 * 120.00148 * 96.07440 * 10 9 7 18 18 O 1.21281 * 120.00195 * 175.18679 * 17 10 9 19 19 C 1.50699 * 119.99573 * 355.19076 * 17 10 9 20 20 H 1.09006 * 109.64256 * 315.30804 * 19 17 10 21 21 C 1.53020 * 109.64705 * 75.72883 * 19 17 10 22 22 C 1.50064 * 110.15054 * 169.11576 * 21 19 17 23 23 C 1.29447 * 124.07710 * 342.87802 * 22 21 19 24 24 C 1.50067 * 124.07240 * 0.47994 * 23 22 21 25 25 C 1.53038 * 110.14233 * 342.83817 * 24 23 22 26 26 H 0.96993 * 120.00575 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47280 * 59.99890 * 9 7 2 28 28 H 1.08996 * 109.47511 * 299.99465 * 9 7 2 29 29 H 1.08990 * 109.47193 * 27.65792 * 11 10 9 30 30 H 1.09007 * 109.47167 * 147.65975 * 11 10 9 31 31 H 1.08002 * 126.58281 * 0.02868 * 13 12 11 32 32 H 1.08004 * 126.58057 * 180.12265 * 14 13 12 33 33 H 1.07998 * 125.78566 * 179.74788 * 15 14 13 34 34 H 1.09000 * 109.35872 * 289.33144 * 21 19 17 35 35 H 1.09002 * 109.35546 * 49.04854 * 21 19 17 36 36 H 1.08006 * 117.96179 * 162.84728 * 22 21 19 37 37 H 1.07995 * 117.95992 * 180.46359 * 23 22 21 38 38 H 1.09003 * 109.35137 * 103.06337 * 24 23 22 39 39 H 1.09000 * 109.35795 * 222.77707 * 24 23 22 40 40 H 1.08992 * 109.65520 * 289.77417 * 25 24 23 41 41 H 1.08995 * 109.63270 * 169.13512 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2032 -3.6125 0.0005 11 6 2.7767 -4.0859 -1.2617 12 6 1.9303 -5.2063 -1.8091 13 6 0.8798 -5.0660 -2.6374 14 6 0.3865 -6.3653 -2.8969 15 6 1.1600 -7.2212 -2.2050 16 8 2.0934 -6.5136 -1.5480 17 6 2.5473 -4.2050 1.1612 18 8 3.2666 -5.1815 1.1537 19 6 2.0381 -3.6542 2.4682 20 1 2.1371 -2.5687 2.4718 21 6 0.5678 -4.0372 2.6500 22 6 0.1228 -3.7300 4.0499 23 6 0.9318 -3.5210 5.0386 24 6 2.4276 -3.5465 4.9209 25 6 2.8426 -4.2535 3.6287 26 1 -0.4850 0.8399 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6242 -2.5568 0.8903 29 1 2.8024 -3.2660 -1.9792 30 1 3.7900 -4.4480 -1.0872 31 1 0.4896 -4.1389 -3.0307 32 1 -0.4530 -6.6212 -3.5263 33 1 1.0489 -8.2952 -2.1816 34 1 -0.0424 -3.4728 1.9448 35 1 0.4461 -5.1036 2.4602 36 1 -0.9384 -3.6798 4.2445 37 1 0.5035 -3.3153 6.0084 38 1 2.8066 -2.5245 4.9118 39 1 2.8480 -4.0801 5.7733 40 1 2.6304 -5.3195 3.7096 41 1 3.9075 -4.1009 3.4535 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057682441.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:46 Heat of formation + Delta-G solvation = -13.040062 kcal Electronic energy + Delta-G solvation = -23627.336664 eV Core-core repulsion = 20280.926722 eV Total energy + Delta-G solvation = -3346.409942 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.14640 -39.66936 -37.21837 -35.19752 -32.83579 -32.48222 -31.31575 -30.51417 -29.73878 -27.31443 -25.64106 -23.59243 -22.72526 -22.11828 -21.31037 -20.20390 -18.49279 -17.55220 -17.09912 -16.54514 -16.20382 -15.96696 -15.53707 -14.93707 -14.52063 -14.43316 -13.91698 -13.40877 -13.23868 -12.82999 -12.73253 -12.44417 -12.40397 -12.34110 -12.12157 -11.94294 -11.82630 -11.42034 -11.21883 -10.96331 -10.75842 -10.55101 -10.31907 -10.15969 -9.97923 -9.76845 -9.55210 -8.99809 -8.70161 -8.54045 -8.14102 -7.82610 -6.21346 -4.28521 2.06186 2.59980 2.93168 3.19677 3.24621 3.29063 3.32705 3.53962 4.01372 4.31261 4.99252 5.06104 5.11931 5.12714 5.27515 5.37000 5.40244 5.54615 5.63100 5.65865 5.79731 5.88107 5.91941 6.06627 6.12816 6.13818 6.19236 6.27594 6.30687 6.34472 6.45373 6.53122 6.69506 6.78536 6.86077 6.95113 7.17060 7.29059 7.47105 7.56485 7.72576 8.01742 8.28983 8.75796 8.98002 9.39395 10.85383 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.009904 B = 0.007521 C = 0.004970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2826.344186 B = 3722.083254 C = 5632.056518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.539 4.539 8 H 0.062 0.938 9 C 0.227 3.773 10 N -0.592 5.592 11 C 0.196 3.804 12 C -0.012 4.012 13 C -0.205 4.205 14 C -0.217 4.217 15 C -0.054 4.054 16 O -0.165 6.165 17 C 0.522 3.478 18 O -0.564 6.564 19 C -0.102 4.102 20 H 0.111 0.889 21 C -0.086 4.086 22 C -0.140 4.140 23 C -0.165 4.165 24 C -0.089 4.089 25 C -0.096 4.096 26 H 0.265 0.735 27 H 0.035 0.965 28 H 0.054 0.946 29 H 0.113 0.887 30 H 0.085 0.915 31 H 0.148 0.852 32 H 0.143 0.857 33 H 0.195 0.805 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.293 -8.125 1.948 8.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.578 4.578 8 H 0.081 0.919 9 C 0.108 3.892 10 N -0.322 5.322 11 C 0.072 3.928 12 C -0.064 4.064 13 C -0.225 4.225 14 C -0.236 4.236 15 C -0.123 4.123 16 O -0.060 6.060 17 C 0.310 3.690 18 O -0.443 6.443 19 C -0.123 4.123 20 H 0.129 0.871 21 C -0.123 4.123 22 C -0.158 4.158 23 C -0.183 4.183 24 C -0.126 4.126 25 C -0.134 4.134 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.131 0.869 30 H 0.104 0.896 31 H 0.166 0.834 32 H 0.161 0.839 33 H 0.212 0.788 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.728 -8.594 2.136 8.886 hybrid contribution -0.148 1.114 -0.266 1.155 sum 0.580 -7.481 1.869 7.733 Atomic orbital electron populations 1.69921 1.05969 1.27218 1.49582 1.24921 0.94830 0.99220 0.94694 0.86490 0.80180 0.83360 0.77766 1.19633 1.20874 1.20826 1.21526 0.93686 0.90415 1.52185 0.91935 1.19730 0.87666 0.82395 0.99385 1.48310 1.45487 1.34360 1.04046 1.19696 0.94931 0.90821 0.87308 1.23266 1.00387 0.82738 1.00025 1.21662 0.98516 0.98700 1.03627 1.21779 1.03371 0.93060 1.05395 1.23949 0.92116 0.97734 0.98468 1.84121 1.46969 1.18026 1.56855 1.20595 0.80045 0.82603 0.85746 1.90607 1.39154 1.26772 1.87817 1.21307 0.95809 1.03252 0.91934 0.87109 1.20554 0.94851 1.01407 0.95481 1.22003 0.99134 1.00135 0.94573 1.21979 0.95509 1.02424 0.98349 1.20461 0.93349 1.01004 0.97807 1.21391 0.99512 0.99795 0.92710 0.92556 0.94738 0.92846 0.86950 0.89630 0.83412 0.83950 0.78802 0.88941 0.91255 0.87998 0.88364 0.90832 0.91397 0.91558 0.91463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.76 13.29 55.43 0.74 -23.02 16 2 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 20.05 29.54 -169.99 -5.02 15.03 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.54 -13.48 9.17 -34.44 -0.32 -13.80 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.23 5.21 4.79 -5.19 -0.02 5.18 16 10 N -0.59 -12.35 2.45 -176.43 -0.43 -12.78 16 11 C 0.20 3.71 5.89 -5.19 -0.03 3.68 16 12 C -0.01 -0.23 6.89 -35.62 -0.25 -0.47 16 13 C -0.21 -3.49 10.81 -39.70 -0.43 -3.92 16 14 C -0.22 -3.22 10.91 -39.70 -0.43 -3.65 16 15 C -0.05 -0.80 12.09 29.42 0.36 -0.44 16 16 O -0.16 -3.04 10.65 5.71 0.06 -2.98 16 17 C 0.52 10.91 6.87 -10.98 -0.08 10.84 16 18 O -0.56 -12.81 15.79 5.56 0.09 -12.73 16 19 C -0.10 -1.90 1.72 -91.56 -0.16 -2.05 16 20 H 0.11 2.25 7.40 -51.93 -0.38 1.86 16 21 C -0.09 -1.49 5.14 -28.18 -0.14 -1.64 16 22 C -0.14 -2.14 9.80 -35.90 -0.35 -2.49 16 23 C -0.16 -2.32 9.80 -35.90 -0.35 -2.68 16 24 C -0.09 -1.24 6.12 -28.17 -0.17 -1.41 16 25 C -0.10 -1.57 4.62 -26.51 -0.12 -1.69 16 26 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 27 H 0.03 0.84 8.11 -51.93 -0.42 0.42 16 28 H 0.05 1.25 4.06 -51.93 -0.21 1.04 16 29 H 0.11 1.99 8.05 -51.93 -0.42 1.57 16 30 H 0.09 1.60 7.57 -51.92 -0.39 1.21 16 31 H 0.15 2.41 8.06 -52.49 -0.42 1.99 16 32 H 0.14 1.71 8.06 -52.48 -0.42 1.29 16 33 H 0.20 2.02 8.06 -52.49 -0.42 1.59 16 34 H 0.09 1.74 5.63 -51.93 -0.29 1.44 16 35 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 36 H 0.10 1.39 8.06 -52.48 -0.42 0.97 16 37 H 0.10 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.07 1.11 8.12 -51.93 -0.42 0.68 16 41 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 LS Contribution 340.98 15.07 5.14 5.14 Total: -1.00 -29.01 340.98 -7.92 -36.92 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -5.89 Total: 7.35 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -2.60 Total: -12.93 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.30 Total: -35.81 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: 0.15 Total: -15.71 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.01 -7.92 -36.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057682441.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.883 kcal (2) G-P(sol) polarization free energy of solvation -29.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds