Wall clock time and date at job start Tue Mar 31 2020 05:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99785 * 2 1 4 4 H 1.48494 * 109.47345 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47100 * 299.99926 * 3 2 1 6 6 H 1.48502 * 109.47199 * 59.99433 * 3 2 1 7 7 C 1.37875 * 120.00741 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00619 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99494 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47118 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00087 * 275.80191 * 10 9 7 12 12 C 1.50706 * 109.47096 * 267.65702 * 11 10 9 13 13 C 1.34507 * 125.78607 * 89.71451 * 12 11 10 14 14 C 1.41384 * 106.83923 * 179.89069 * 13 12 11 15 15 C 1.34520 * 106.83935 * 0.37303 * 14 13 12 16 16 O 1.34302 * 125.78728 * 270.02575 * 12 11 10 17 17 C 1.34781 * 120.00148 * 96.07440 * 10 9 7 18 18 O 1.21281 * 120.00195 * 175.18679 * 17 10 9 19 19 C 1.50699 * 119.99573 * 355.19076 * 17 10 9 20 20 H 1.09006 * 109.64256 * 315.30804 * 19 17 10 21 21 C 1.53020 * 109.64705 * 75.72883 * 19 17 10 22 22 C 1.50064 * 110.15054 * 169.11576 * 21 19 17 23 23 C 1.29447 * 124.07710 * 342.87802 * 22 21 19 24 24 C 1.50067 * 124.07240 * 0.47994 * 23 22 21 25 25 C 1.53038 * 110.14233 * 342.83817 * 24 23 22 26 26 H 0.96993 * 120.00575 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47280 * 59.99890 * 9 7 2 28 28 H 1.08996 * 109.47511 * 299.99465 * 9 7 2 29 29 H 1.08990 * 109.47193 * 27.65792 * 11 10 9 30 30 H 1.09007 * 109.47167 * 147.65975 * 11 10 9 31 31 H 1.08002 * 126.58281 * 0.02868 * 13 12 11 32 32 H 1.08004 * 126.58057 * 180.12265 * 14 13 12 33 33 H 1.07998 * 125.78566 * 179.74788 * 15 14 13 34 34 H 1.09000 * 109.35872 * 289.33144 * 21 19 17 35 35 H 1.09002 * 109.35546 * 49.04854 * 21 19 17 36 36 H 1.08006 * 117.96179 * 162.84728 * 22 21 19 37 37 H 1.07995 * 117.95992 * 180.46359 * 23 22 21 38 38 H 1.09003 * 109.35137 * 103.06337 * 24 23 22 39 39 H 1.09000 * 109.35795 * 222.77707 * 24 23 22 40 40 H 1.08992 * 109.65520 * 289.77417 * 25 24 23 41 41 H 1.08995 * 109.63270 * 169.13512 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2032 -3.6125 0.0005 11 6 2.7767 -4.0859 -1.2617 12 6 1.9303 -5.2063 -1.8091 13 6 0.8798 -5.0660 -2.6374 14 6 0.3865 -6.3653 -2.8969 15 6 1.1600 -7.2212 -2.2050 16 8 2.0934 -6.5136 -1.5480 17 6 2.5473 -4.2050 1.1612 18 8 3.2666 -5.1815 1.1537 19 6 2.0381 -3.6542 2.4682 20 1 2.1371 -2.5687 2.4718 21 6 0.5678 -4.0372 2.6500 22 6 0.1228 -3.7300 4.0499 23 6 0.9318 -3.5210 5.0386 24 6 2.4276 -3.5465 4.9209 25 6 2.8426 -4.2535 3.6287 26 1 -0.4850 0.8399 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6242 -2.5568 0.8903 29 1 2.8024 -3.2660 -1.9792 30 1 3.7900 -4.4480 -1.0872 31 1 0.4896 -4.1389 -3.0307 32 1 -0.4530 -6.6212 -3.5263 33 1 1.0489 -8.2952 -2.1816 34 1 -0.0424 -3.4728 1.9448 35 1 0.4461 -5.1036 2.4602 36 1 -0.9384 -3.6798 4.2445 37 1 0.5035 -3.3153 6.0084 38 1 2.8066 -2.5245 4.9118 39 1 2.8480 -4.0801 5.7733 40 1 2.6304 -5.3195 3.7096 41 1 3.9075 -4.1009 3.4535 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057682441.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:45 Heat of formation + Delta-G solvation = -27.315407 kcal Electronic energy + Delta-G solvation = -23627.955689 eV Core-core repulsion = 20280.926722 eV Total energy + Delta-G solvation = -3347.028967 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.45913 -41.25141 -38.59345 -36.94100 -34.67709 -33.87015 -32.72192 -31.77153 -31.13004 -29.14487 -27.09876 -25.27252 -24.21934 -23.51334 -22.60557 -21.53119 -20.05864 -18.96342 -18.64862 -18.12523 -17.82351 -17.50621 -16.89181 -16.46322 -16.20137 -15.96213 -15.31688 -14.78582 -14.66158 -14.35133 -14.20761 -13.97859 -13.74633 -13.69333 -13.57179 -13.33063 -13.22260 -13.04154 -12.92639 -12.63647 -12.47495 -12.16278 -11.80653 -11.77461 -11.56708 -11.29124 -10.85363 -10.67352 -10.50489 -9.83372 -9.65328 -9.38478 -8.18841 -6.32375 0.74218 1.41348 1.44130 1.45348 1.54894 1.64158 1.70242 2.18170 2.38201 2.49217 3.12148 3.57979 3.79302 3.83153 3.91139 4.08339 4.15769 4.25822 4.34391 4.40031 4.43130 4.51845 4.55272 4.66340 4.72347 4.85507 4.90970 4.97173 5.00823 5.03214 5.04275 5.19562 5.26300 5.33400 5.38646 5.61838 5.67470 5.77322 5.79945 6.06120 6.09017 6.25461 6.54178 6.80462 7.25906 7.40612 8.87241 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.009904 B = 0.007521 C = 0.004970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2826.344186 B = 3722.083254 C = 5632.056518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.025 3.975 3 Si 0.954 3.046 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.546 4.546 8 H 0.055 0.945 9 C 0.244 3.756 10 N -0.594 5.594 11 C 0.195 3.805 12 C -0.042 4.042 13 C -0.208 4.208 14 C -0.222 4.222 15 C -0.046 4.046 16 O -0.190 6.190 17 C 0.516 3.484 18 O -0.584 6.584 19 C -0.099 4.099 20 H 0.092 0.908 21 C -0.078 4.078 22 C -0.163 4.163 23 C -0.153 4.153 24 C -0.088 4.088 25 C -0.092 4.092 26 H 0.267 0.733 27 H 0.017 0.983 28 H 0.049 0.951 29 H 0.117 0.883 30 H 0.081 0.919 31 H 0.148 0.852 32 H 0.174 0.826 33 H 0.239 0.761 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.118 0.882 37 H 0.128 0.872 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.062 0.938 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.056 -8.483 2.828 8.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.175 4.175 3 Si 0.780 3.220 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.585 4.585 8 H 0.073 0.927 9 C 0.124 3.876 10 N -0.323 5.323 11 C 0.072 3.928 12 C -0.093 4.093 13 C -0.228 4.228 14 C -0.241 4.241 15 C -0.113 4.113 16 O -0.086 6.086 17 C 0.305 3.695 18 O -0.466 6.466 19 C -0.120 4.120 20 H 0.110 0.890 21 C -0.115 4.115 22 C -0.181 4.181 23 C -0.171 4.171 24 C -0.125 4.125 25 C -0.130 4.130 26 H 0.076 0.924 27 H 0.035 0.965 28 H 0.067 0.933 29 H 0.135 0.865 30 H 0.100 0.900 31 H 0.166 0.834 32 H 0.191 0.809 33 H 0.255 0.745 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.136 0.864 37 H 0.146 0.854 38 H 0.096 0.904 39 H 0.115 0.885 40 H 0.080 0.920 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.495 -8.952 3.004 9.456 hybrid contribution -0.077 1.142 -0.595 1.289 sum 0.418 -7.811 2.410 8.185 Atomic orbital electron populations 1.70007 1.07131 1.28049 1.50366 1.25588 0.95515 1.02071 0.94375 0.85567 0.78964 0.79719 0.77799 1.19480 1.20507 1.20417 1.21687 0.93396 0.91442 1.51940 0.92682 1.19394 0.87555 0.82458 0.98219 1.48313 1.45099 1.33875 1.05037 1.19711 0.94889 0.91561 0.86675 1.23056 1.01557 0.82914 1.01770 1.21879 0.97995 0.99982 1.02917 1.22136 1.04296 0.91771 1.05886 1.24873 0.90382 0.99454 0.96608 1.84096 1.48449 1.18123 1.57912 1.21056 0.79638 0.82318 0.86471 1.90580 1.40152 1.27695 1.88173 1.21300 0.97135 1.01917 0.91653 0.89019 1.20415 0.93532 1.00695 0.96903 1.22028 1.00371 1.02255 0.93440 1.22277 0.95419 1.00179 0.99190 1.20523 0.93549 1.01265 0.97183 1.21374 0.98785 0.99681 0.93152 0.92366 0.96475 0.93326 0.86522 0.90048 0.83418 0.80876 0.74532 0.91088 0.91727 0.86407 0.85426 0.90431 0.88492 0.91970 0.92030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.45 13.29 21.45 0.28 -49.16 16 2 C 0.03 1.30 5.46 84.65 0.46 1.76 16 3 Si 0.95 41.08 29.54 68.60 2.03 43.11 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 6 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 7 C -0.55 -27.85 9.17 25.60 0.23 -27.61 16 8 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 9 C 0.24 11.58 4.79 85.63 0.41 11.99 16 10 N -0.59 -25.73 2.45 -830.50 -2.03 -27.77 16 11 C 0.19 7.67 5.89 85.64 0.50 8.17 16 12 C -0.04 -1.57 6.89 24.83 0.17 -1.40 16 13 C -0.21 -7.08 10.81 22.19 0.24 -6.84 16 14 C -0.22 -6.20 10.91 22.19 0.24 -5.96 16 15 C -0.05 -1.26 12.09 66.97 0.81 -0.45 16 16 O -0.19 -6.98 10.65 -2.48 -0.03 -7.01 16 17 C 0.52 22.27 6.87 87.66 0.60 22.87 16 18 O -0.58 -27.25 15.79 -3.03 -0.05 -27.30 16 19 C -0.10 -3.75 1.72 -11.40 -0.02 -3.77 16 20 H 0.09 3.82 7.40 -2.38 -0.02 3.81 16 21 C -0.08 -2.76 5.14 29.66 0.15 -2.61 16 22 C -0.16 -4.78 9.80 27.03 0.27 -4.52 16 23 C -0.15 -3.93 9.80 27.03 0.27 -3.67 16 24 C -0.09 -2.26 6.12 29.66 0.18 -2.08 16 25 C -0.09 -2.96 4.62 30.74 0.14 -2.82 16 26 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 27 H 0.02 0.87 8.11 -2.39 -0.02 0.85 16 28 H 0.05 2.38 4.06 -2.39 -0.01 2.37 16 29 H 0.12 4.34 8.05 -2.39 -0.02 4.32 16 30 H 0.08 3.20 7.57 -2.38 -0.02 3.19 16 31 H 0.15 4.92 8.06 -2.91 -0.02 4.89 16 32 H 0.17 3.66 8.06 -2.91 -0.02 3.63 16 33 H 0.24 4.10 8.06 -2.91 -0.02 4.08 16 34 H 0.07 2.78 5.63 -2.39 -0.01 2.77 16 35 H 0.06 2.28 8.10 -2.39 -0.02 2.26 16 36 H 0.12 3.05 8.06 -2.91 -0.02 3.02 16 37 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 38 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 39 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.06 2.04 8.12 -2.39 -0.02 2.02 16 41 H 0.06 2.03 8.12 -2.39 -0.02 2.01 16 Total: -1.00 -62.54 340.98 5.88 -56.65 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 1.02 Total: 28.41 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: 4.66 Total: -16.94 kcal Atomic # 7 Polarization: -75.18 SS G_CDS: -1.75 Total: -76.93 kcal Atomic # 8 Polarization: -34.24 SS G_CDS: -0.07 Total: -34.31 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -62.54 5.88 -56.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057682441.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.339 kcal (2) G-P(sol) polarization free energy of solvation -62.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds