Wall clock time and date at job start Tue Mar 31 2020 05:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99964 * 2 1 4 4 H 1.48501 * 109.47185 * 240.00391 * 3 2 1 5 5 H 1.48506 * 109.47047 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46910 * 120.00094 * 3 2 1 7 7 C 1.37877 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99461 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00361 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47123 * 180.02562 * 9 7 2 11 11 C 1.46500 * 120.00474 * 85.45577 * 10 9 7 12 12 C 1.50700 * 109.47190 * 85.07271 * 11 10 9 13 13 C 1.34519 * 125.78754 * 90.00322 * 12 11 10 14 14 C 1.41377 * 106.83778 * 180.02562 * 13 12 11 15 15 C 1.34516 * 106.84593 * 0.22362 * 14 13 12 16 16 O 1.34304 * 125.79035 * 270.02851 * 12 11 10 17 17 C 1.34783 * 119.99735 * 265.45278 * 10 9 7 18 18 O 1.21285 * 119.99747 * 185.35778 * 17 10 9 19 19 C 1.50700 * 120.00261 * 5.35858 * 17 10 9 20 20 H 1.09005 * 109.63481 * 37.98453 * 19 17 10 21 21 C 1.53022 * 109.64196 * 277.56354 * 19 17 10 22 22 C 1.50071 * 110.14579 * 190.87758 * 21 19 17 23 23 C 1.29441 * 124.07742 * 17.12683 * 22 21 19 24 24 C 1.50073 * 124.07298 * 359.56171 * 23 22 21 25 25 C 1.53005 * 110.15319 * 17.08437 * 24 23 22 26 26 H 0.97001 * 119.99617 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.46999 * 60.00021 * 9 7 2 28 28 H 1.08998 * 109.47301 * 300.00592 * 9 7 2 29 29 H 1.09007 * 109.46455 * 325.08043 * 11 10 9 30 30 H 1.08999 * 109.47252 * 205.07951 * 11 10 9 31 31 H 1.07997 * 126.57573 * 359.97438 * 13 12 11 32 32 H 1.08008 * 126.57803 * 179.97438 * 14 13 12 33 33 H 1.08001 * 125.78954 * 179.77496 * 15 14 13 34 34 H 1.08992 * 109.35818 * 311.08744 * 21 19 17 35 35 H 1.09008 * 109.35785 * 70.80996 * 21 19 17 36 36 H 1.08002 * 117.96299 * 197.15687 * 22 21 19 37 37 H 1.07998 * 117.96269 * 179.53128 * 23 22 21 38 38 H 1.08996 * 109.35713 * 137.30892 * 24 23 22 39 39 H 1.09004 * 109.35346 * 257.03283 * 24 23 22 40 40 H 1.09008 * 109.64675 * 190.89875 * 25 24 23 41 41 H 1.09003 * 109.62603 * 70.28149 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.7556 -4.1041 1.2641 12 6 1.8076 -5.1062 1.8708 13 6 1.8208 -6.4336 1.6530 14 6 0.7654 -6.9843 2.4157 15 6 0.1672 -5.9600 3.0500 16 8 0.8058 -4.8254 2.7202 17 6 2.5707 -4.1849 -1.1641 18 8 3.2819 -5.1674 -1.1587 19 6 2.0981 -3.6041 -2.4720 20 1 2.0935 -2.5159 -2.4091 21 6 0.6859 -4.1077 -2.7780 22 6 0.3064 -3.7575 -4.1870 23 6 1.1547 -3.4157 -5.1031 24 6 2.6354 -3.3129 -4.8816 25 6 3.0301 -4.0557 -3.6035 26 1 -0.4849 0.8401 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 2.8895 -3.2685 1.9512 30 1 3.7185 -4.5804 1.0793 31 1 2.5056 -6.9745 1.0168 32 1 0.4896 -8.0269 2.4742 33 1 -0.6811 -6.0372 3.7139 34 1 0.6534 -5.1900 -2.6534 35 1 -0.0203 -3.6434 -2.0897 36 1 -0.7397 -3.7923 -4.4533 37 1 0.7731 -3.1911 -6.0882 38 1 3.1591 -3.7514 -5.7309 39 1 2.9145 -2.2634 -4.7876 40 1 4.0620 -3.8178 -3.3452 41 1 2.9259 -5.1298 -3.7573 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057682442.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:48 Heat of formation + Delta-G solvation = -15.952125 kcal Electronic energy + Delta-G solvation = -23597.554469 eV Core-core repulsion = 20251.018251 eV Total energy + Delta-G solvation = -3346.536218 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.15655 -39.67890 -37.24738 -35.15537 -32.86826 -32.47527 -31.29683 -30.51520 -29.77927 -27.26802 -25.67715 -23.53494 -22.75944 -22.15530 -21.31290 -20.18947 -18.49895 -17.54528 -17.12282 -16.55876 -16.19593 -15.99244 -15.52750 -14.90946 -14.51166 -14.44908 -13.82771 -13.53857 -13.23121 -12.84344 -12.59597 -12.42968 -12.41959 -12.32366 -12.30153 -11.94145 -11.74483 -11.50483 -11.15102 -11.01538 -10.73447 -10.56229 -10.33769 -10.14922 -9.99563 -9.79884 -9.56912 -9.02420 -8.69872 -8.54419 -8.14563 -7.83218 -6.18768 -4.26309 2.05624 2.58809 2.92892 3.21165 3.23731 3.29035 3.31299 3.52454 4.00397 4.32774 4.98866 5.06376 5.11940 5.14533 5.27484 5.36257 5.38793 5.53812 5.62149 5.66285 5.79763 5.88098 5.91769 6.05216 6.11949 6.12929 6.19161 6.28471 6.31466 6.34929 6.45161 6.51798 6.68949 6.78897 6.86158 6.93986 7.17759 7.27651 7.46464 7.55075 7.74404 8.03610 8.28174 8.76350 8.95263 9.41172 10.88098 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.009768 B = 0.007605 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.725118 B = 3681.050761 C = 5622.539352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.896 3.104 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.541 4.541 8 H 0.061 0.939 9 C 0.232 3.768 10 N -0.591 5.591 11 C 0.195 3.805 12 C -0.014 4.014 13 C -0.201 4.201 14 C -0.220 4.220 15 C -0.049 4.049 16 O -0.168 6.168 17 C 0.525 3.475 18 O -0.570 6.570 19 C -0.104 4.104 20 H 0.113 0.887 21 C -0.081 4.081 22 C -0.142 4.142 23 C -0.162 4.162 24 C -0.090 4.090 25 C -0.096 4.096 26 H 0.266 0.734 27 H 0.048 0.952 28 H 0.036 0.964 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.146 0.854 32 H 0.142 0.858 33 H 0.197 0.803 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.727 -8.352 -2.284 8.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.579 4.579 8 H 0.079 0.921 9 C 0.113 3.887 10 N -0.321 5.321 11 C 0.071 3.929 12 C -0.065 4.065 13 C -0.221 4.221 14 C -0.239 4.239 15 C -0.117 4.117 16 O -0.063 6.063 17 C 0.314 3.686 18 O -0.451 6.451 19 C -0.125 4.125 20 H 0.131 0.869 21 C -0.118 4.118 22 C -0.160 4.160 23 C -0.180 4.180 24 C -0.127 4.127 25 C -0.134 4.134 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.164 0.836 32 H 0.160 0.840 33 H 0.214 0.786 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.843 -8.404 -2.174 8.721 hybrid contribution 0.072 0.811 0.063 0.817 sum 0.915 -7.592 -2.111 7.933 Atomic orbital electron populations 1.69918 1.05989 1.27401 1.49335 1.24928 0.94837 0.99213 0.94670 0.86588 0.79583 0.82670 0.78825 1.20052 1.21153 1.20132 1.21429 0.93564 0.90435 1.52494 0.92050 1.19602 0.87558 0.82374 0.99157 1.48317 1.45464 1.34480 1.03790 1.19696 0.92588 0.94683 0.85936 1.23228 0.92331 0.95934 0.95035 1.21639 1.02228 0.93811 1.04448 1.21780 0.99536 0.99988 1.02620 1.23959 1.00283 0.83332 1.04133 1.84096 1.37179 1.34452 1.50607 1.20575 0.79585 0.82681 0.85736 1.90571 1.39813 1.26693 1.88000 1.21339 0.95816 1.03551 0.91832 0.86869 1.20429 0.95616 1.00796 0.94981 1.21987 0.98951 1.00209 0.94865 1.21983 0.95450 1.01920 0.98695 1.20459 0.93467 1.01020 0.97727 1.21384 0.98686 1.00238 0.93071 0.92457 0.93431 0.94616 0.88711 0.87742 0.83588 0.84011 0.78634 0.91105 0.89674 0.88015 0.88343 0.91356 0.90767 0.91557 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.28 13.29 55.43 0.74 -23.54 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -13.79 8.97 -34.44 -0.31 -14.10 16 8 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 9 C 0.23 5.49 4.79 -5.20 -0.02 5.46 16 10 N -0.59 -12.37 2.44 -176.43 -0.43 -12.80 16 11 C 0.19 3.69 5.97 -5.19 -0.03 3.66 16 12 C -0.01 -0.25 6.90 -35.62 -0.25 -0.50 16 13 C -0.20 -3.45 10.81 -39.70 -0.43 -3.88 16 14 C -0.22 -3.26 10.91 -39.70 -0.43 -3.70 16 15 C -0.05 -0.72 12.09 29.42 0.36 -0.36 16 16 O -0.17 -3.09 10.65 5.70 0.06 -3.03 16 17 C 0.53 10.75 6.80 -10.98 -0.07 10.68 16 18 O -0.57 -12.32 15.76 5.55 0.09 -12.24 16 19 C -0.10 -1.92 1.71 -91.56 -0.16 -2.08 16 20 H 0.11 2.32 6.91 -51.93 -0.36 1.96 16 21 C -0.08 -1.38 5.21 -28.18 -0.15 -1.53 16 22 C -0.14 -2.14 9.80 -35.90 -0.35 -2.49 16 23 C -0.16 -2.28 9.80 -35.90 -0.35 -2.63 16 24 C -0.09 -1.24 6.12 -28.18 -0.17 -1.41 16 25 C -0.10 -1.54 4.67 -26.53 -0.12 -1.67 16 26 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 27 H 0.05 1.15 4.62 -51.93 -0.24 0.91 16 28 H 0.04 0.92 8.11 -51.93 -0.42 0.50 16 29 H 0.09 1.77 8.11 -51.92 -0.42 1.35 16 30 H 0.10 1.87 7.36 -51.93 -0.38 1.49 16 31 H 0.15 2.47 8.06 -52.49 -0.42 2.05 16 32 H 0.14 1.69 8.06 -52.48 -0.42 1.27 16 33 H 0.20 2.04 8.06 -52.49 -0.42 1.62 16 34 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 35 H 0.08 1.57 6.19 -51.92 -0.32 1.25 16 36 H 0.10 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.10 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 1.08 8.14 -51.92 -0.42 0.65 16 41 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 LS Contribution 341.35 15.07 5.14 5.14 Total: -1.00 -28.84 341.35 -7.93 -36.77 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -5.91 Total: 7.28 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -2.59 Total: -12.90 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.31 Total: -36.35 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: 0.15 Total: -15.27 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.84 -7.93 -36.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057682442.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.819 kcal (2) G-P(sol) polarization free energy of solvation -28.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds