Wall clock time and date at job start Tue Mar 31 2020 05:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99964 * 2 1 4 4 H 1.48501 * 109.47185 * 240.00391 * 3 2 1 5 5 H 1.48506 * 109.47047 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46910 * 120.00094 * 3 2 1 7 7 C 1.37877 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99461 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00361 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47123 * 180.02562 * 9 7 2 11 11 C 1.46500 * 120.00474 * 85.45577 * 10 9 7 12 12 C 1.50700 * 109.47190 * 85.07271 * 11 10 9 13 13 C 1.34519 * 125.78754 * 90.00322 * 12 11 10 14 14 C 1.41377 * 106.83778 * 180.02562 * 13 12 11 15 15 C 1.34516 * 106.84593 * 0.22362 * 14 13 12 16 16 O 1.34304 * 125.79035 * 270.02851 * 12 11 10 17 17 C 1.34783 * 119.99735 * 265.45278 * 10 9 7 18 18 O 1.21285 * 119.99747 * 185.35778 * 17 10 9 19 19 C 1.50700 * 120.00261 * 5.35858 * 17 10 9 20 20 H 1.09005 * 109.63481 * 37.98453 * 19 17 10 21 21 C 1.53022 * 109.64196 * 277.56354 * 19 17 10 22 22 C 1.50071 * 110.14579 * 190.87758 * 21 19 17 23 23 C 1.29441 * 124.07742 * 17.12683 * 22 21 19 24 24 C 1.50073 * 124.07298 * 359.56171 * 23 22 21 25 25 C 1.53005 * 110.15319 * 17.08437 * 24 23 22 26 26 H 0.97001 * 119.99617 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.46999 * 60.00021 * 9 7 2 28 28 H 1.08998 * 109.47301 * 300.00592 * 9 7 2 29 29 H 1.09007 * 109.46455 * 325.08043 * 11 10 9 30 30 H 1.08999 * 109.47252 * 205.07951 * 11 10 9 31 31 H 1.07997 * 126.57573 * 359.97438 * 13 12 11 32 32 H 1.08008 * 126.57803 * 179.97438 * 14 13 12 33 33 H 1.08001 * 125.78954 * 179.77496 * 15 14 13 34 34 H 1.08992 * 109.35818 * 311.08744 * 21 19 17 35 35 H 1.09008 * 109.35785 * 70.80996 * 21 19 17 36 36 H 1.08002 * 117.96299 * 197.15687 * 22 21 19 37 37 H 1.07998 * 117.96269 * 179.53128 * 23 22 21 38 38 H 1.08996 * 109.35713 * 137.30892 * 24 23 22 39 39 H 1.09004 * 109.35346 * 257.03283 * 24 23 22 40 40 H 1.09008 * 109.64675 * 190.89875 * 25 24 23 41 41 H 1.09003 * 109.62603 * 70.28149 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.7556 -4.1041 1.2641 12 6 1.8076 -5.1062 1.8708 13 6 1.8208 -6.4336 1.6530 14 6 0.7654 -6.9843 2.4157 15 6 0.1672 -5.9600 3.0500 16 8 0.8058 -4.8254 2.7202 17 6 2.5707 -4.1849 -1.1641 18 8 3.2819 -5.1674 -1.1587 19 6 2.0981 -3.6041 -2.4720 20 1 2.0935 -2.5159 -2.4091 21 6 0.6859 -4.1077 -2.7780 22 6 0.3064 -3.7575 -4.1870 23 6 1.1547 -3.4157 -5.1031 24 6 2.6354 -3.3129 -4.8816 25 6 3.0301 -4.0557 -3.6035 26 1 -0.4849 0.8401 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 2.8895 -3.2685 1.9512 30 1 3.7185 -4.5804 1.0793 31 1 2.5056 -6.9745 1.0168 32 1 0.4896 -8.0269 2.4742 33 1 -0.6811 -6.0372 3.7139 34 1 0.6534 -5.1900 -2.6534 35 1 -0.0203 -3.6434 -2.0897 36 1 -0.7397 -3.7923 -4.4533 37 1 0.7731 -3.1911 -6.0882 38 1 3.1591 -3.7514 -5.7309 39 1 2.9145 -2.2634 -4.7876 40 1 4.0620 -3.8178 -3.3452 41 1 2.9259 -5.1298 -3.7573 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057682442.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:47 Heat of formation + Delta-G solvation = -30.121644 kcal Electronic energy + Delta-G solvation = -23598.168905 eV Core-core repulsion = 20251.018251 eV Total energy + Delta-G solvation = -3347.150655 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.47605 -41.24875 -38.60708 -36.89697 -34.70375 -33.90738 -32.69556 -31.75695 -31.17466 -29.13379 -27.13351 -25.22792 -24.27514 -23.52908 -22.60261 -21.53267 -20.05792 -18.95015 -18.68733 -18.17231 -17.80939 -17.51033 -16.87928 -16.48703 -16.15047 -15.98962 -15.22453 -14.95308 -14.60531 -14.29281 -14.15845 -14.01857 -13.79918 -13.72297 -13.55241 -13.39005 -13.13735 -13.11542 -12.89716 -12.69976 -12.50682 -12.15751 -11.83672 -11.74095 -11.62953 -11.29778 -10.87095 -10.68221 -10.51509 -9.84073 -9.67272 -9.38934 -8.20054 -6.34706 0.72947 1.43060 1.43606 1.44278 1.51483 1.63079 1.68782 2.16503 2.37181 2.47876 3.10555 3.58888 3.78577 3.83485 3.89360 4.09618 4.15807 4.25491 4.34935 4.39700 4.43472 4.52639 4.55202 4.67704 4.73571 4.84545 4.90139 4.95364 5.01421 5.03392 5.04597 5.17974 5.26376 5.27652 5.39659 5.61200 5.63523 5.74828 5.79570 6.03883 6.08501 6.23655 6.52551 6.78178 7.23974 7.38231 8.86012 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.009768 B = 0.007605 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.725118 B = 3681.050761 C = 5622.539352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.023 3.977 3 Si 0.956 3.044 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.548 4.548 8 H 0.057 0.943 9 C 0.252 3.748 10 N -0.594 5.594 11 C 0.194 3.806 12 C -0.044 4.044 13 C -0.202 4.202 14 C -0.223 4.223 15 C -0.042 4.042 16 O -0.194 6.194 17 C 0.521 3.479 18 O -0.583 6.583 19 C -0.102 4.102 20 H 0.090 0.910 21 C -0.075 4.075 22 C -0.164 4.164 23 C -0.152 4.152 24 C -0.089 4.089 25 C -0.092 4.092 26 H 0.268 0.732 27 H 0.041 0.959 28 H 0.008 0.992 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.144 0.856 32 H 0.175 0.825 33 H 0.239 0.761 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.118 0.882 37 H 0.128 0.872 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.729 -8.710 -3.196 9.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.178 4.178 3 Si 0.781 3.219 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.587 4.587 8 H 0.075 0.925 9 C 0.132 3.868 10 N -0.324 5.324 11 C 0.071 3.929 12 C -0.095 4.095 13 C -0.222 4.222 14 C -0.242 4.242 15 C -0.109 4.109 16 O -0.090 6.090 17 C 0.311 3.689 18 O -0.464 6.464 19 C -0.123 4.123 20 H 0.108 0.892 21 C -0.112 4.112 22 C -0.182 4.182 23 C -0.170 4.170 24 C -0.126 4.126 25 C -0.130 4.130 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.027 0.973 29 H 0.107 0.893 30 H 0.129 0.871 31 H 0.162 0.838 32 H 0.192 0.808 33 H 0.255 0.745 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.136 0.864 37 H 0.145 0.855 38 H 0.116 0.884 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.861 -8.776 -3.083 9.342 hybrid contribution 0.061 0.836 0.403 0.930 sum 0.922 -7.940 -2.680 8.431 Atomic orbital electron populations 1.70021 1.07294 1.28220 1.50175 1.25658 0.95556 1.02312 0.94256 0.85633 0.78434 0.78800 0.78997 1.19326 1.20745 1.19774 1.21629 0.93435 0.91403 1.52226 0.92474 1.19176 0.87478 0.82791 0.97380 1.48296 1.45132 1.34011 1.04938 1.19709 0.93230 0.94874 0.85127 1.23046 0.93449 0.96225 0.96788 1.21809 1.02694 0.93448 1.04229 1.22141 0.98543 1.01671 1.01863 1.24886 1.00347 0.82126 1.03572 1.84074 1.37598 1.36365 1.50975 1.20974 0.79208 0.82478 0.86223 1.90549 1.40420 1.27235 1.88230 1.21329 0.97395 1.01880 0.91703 0.89196 1.20315 0.94134 1.00381 0.96359 1.22023 1.00271 1.02153 0.93711 1.22278 0.95260 0.99866 0.99598 1.20521 0.93872 1.00906 0.97311 1.21373 0.97799 1.00430 0.93354 0.92347 0.94133 0.97343 0.89296 0.87105 0.83774 0.80789 0.74456 0.91289 0.91885 0.86369 0.85456 0.88396 0.90687 0.92005 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.99 13.29 21.45 0.28 -50.71 16 2 C 0.02 1.20 5.46 84.65 0.46 1.67 16 3 Si 0.96 41.71 29.54 68.60 2.03 43.73 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.55 -28.68 8.97 25.60 0.23 -28.45 16 8 H 0.06 2.98 7.81 -2.91 -0.02 2.96 16 9 C 0.25 12.44 4.79 85.63 0.41 12.85 16 10 N -0.59 -25.90 2.44 -830.50 -2.03 -27.93 16 11 C 0.19 7.65 5.97 85.63 0.51 8.16 16 12 C -0.04 -1.67 6.90 24.83 0.17 -1.50 16 13 C -0.20 -6.89 10.81 22.19 0.24 -6.65 16 14 C -0.22 -6.22 10.91 22.19 0.24 -5.98 16 15 C -0.04 -1.17 12.09 66.97 0.81 -0.36 16 16 O -0.19 -7.19 10.65 -2.53 -0.03 -7.22 16 17 C 0.52 21.94 6.80 87.66 0.60 22.54 16 18 O -0.58 -25.59 15.76 -3.05 -0.05 -25.64 16 19 C -0.10 -3.83 1.71 -11.40 -0.02 -3.85 16 20 H 0.09 3.80 6.91 -2.38 -0.02 3.79 16 21 C -0.07 -2.59 5.21 29.66 0.15 -2.44 16 22 C -0.16 -4.74 9.80 27.04 0.27 -4.48 16 23 C -0.15 -3.90 9.80 27.04 0.27 -3.63 16 24 C -0.09 -2.27 6.12 29.65 0.18 -2.09 16 25 C -0.09 -2.89 4.67 30.73 0.14 -2.75 16 26 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 27 H 0.04 2.06 4.62 -2.38 -0.01 2.05 16 28 H 0.01 0.46 8.11 -2.39 -0.02 0.44 16 29 H 0.09 3.51 8.11 -2.38 -0.02 3.49 16 30 H 0.11 4.13 7.36 -2.39 -0.02 4.11 16 31 H 0.14 4.90 8.06 -2.91 -0.02 4.88 16 32 H 0.17 3.61 8.06 -2.91 -0.02 3.59 16 33 H 0.24 4.21 8.06 -2.91 -0.02 4.19 16 34 H 0.07 2.36 8.10 -2.39 -0.02 2.35 16 35 H 0.06 2.44 6.19 -2.38 -0.01 2.42 16 36 H 0.12 3.00 8.06 -2.91 -0.02 2.98 16 37 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 38 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 41 H 0.07 2.09 8.10 -2.39 -0.02 2.07 16 Total: -1.00 -62.56 341.35 5.89 -56.68 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: 1.01 Total: 28.05 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: 4.66 Total: -16.97 kcal Atomic # 7 Polarization: -76.90 SS G_CDS: -1.74 Total: -78.64 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -0.07 Total: -32.85 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Total: -62.56 5.89 -56.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057682442.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.554 kcal (2) G-P(sol) polarization free energy of solvation -62.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds