Wall clock time and date at job start Tue Mar 31 2020 06:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38402 * 119.82806 * 2 1 4 4 C 1.37885 * 120.17407 * 180.28065 * 3 2 1 5 5 C 1.39851 * 119.82281 * 359.43610 * 4 3 2 6 6 C 1.47168 * 120.17582 * 180.29957 * 5 4 3 7 7 O 1.21262 * 119.99476 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00520 * 180.02562 * 6 5 4 9 9 C 1.52998 * 109.47015 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.47012 * 180.02562 * 9 8 6 11 11 O 1.21282 * 120.00029 * 359.97438 * 10 9 8 12 12 N 1.34783 * 120.00205 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99950 * 359.97438 * 12 10 9 14 14 C 1.46500 * 119.99993 * 179.97438 * 12 10 9 15 15 C 1.50701 * 109.47373 * 89.99702 * 14 12 10 16 16 H 1.07998 * 119.99702 * 0.02562 * 15 14 12 17 17 C 1.37877 * 120.00187 * 179.97438 * 15 14 12 18 18 N 1.31516 * 119.99900 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99941 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46878 * 90.00101 * 19 17 15 21 21 H 1.48496 * 109.46982 * 209.99926 * 19 17 15 22 22 H 1.48497 * 109.47265 * 330.00259 * 19 17 15 23 23 C 1.39853 * 119.65985 * 0.28751 * 5 4 3 24 24 C 1.37892 * 119.82327 * 359.97438 * 23 5 4 25 25 H 1.08999 * 109.47370 * 270.27837 * 1 2 3 26 26 H 1.09002 * 109.46875 * 30.28498 * 1 2 3 27 27 H 1.09007 * 109.47167 * 150.27884 * 1 2 3 28 28 H 1.07998 * 119.91183 * 359.97438 * 3 2 1 29 29 H 1.08002 * 120.09199 * 179.72215 * 4 3 2 30 30 H 1.08994 * 109.47311 * 300.00700 * 8 6 5 31 31 H 1.09003 * 109.46942 * 60.00429 * 8 6 5 32 32 H 1.09002 * 109.47272 * 300.00076 * 9 8 6 33 33 H 1.08995 * 109.47284 * 59.99996 * 9 8 6 34 34 H 1.09006 * 109.46918 * 90.00131 * 13 12 10 35 35 H 1.08992 * 109.47578 * 210.00237 * 13 12 10 36 36 H 1.09003 * 109.46815 * 330.00907 * 13 12 10 37 37 H 1.08995 * 109.47117 * 209.99812 * 14 12 10 38 38 H 1.08998 * 109.46863 * 329.99757 * 14 12 10 39 39 H 0.96995 * 119.99455 * 180.02562 * 18 17 15 40 40 H 1.08001 * 120.09350 * 180.02562 * 23 5 4 41 41 H 1.07999 * 119.91308 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2007 0.0000 4 6 3.5742 1.2090 -0.0058 5 6 4.2770 0.0000 0.0002 6 6 5.7487 -0.0002 0.0007 7 8 6.3550 1.0500 -0.0037 8 6 6.5022 -1.3052 0.0066 9 6 8.0064 -1.0256 0.0065 10 6 8.7599 -2.3307 0.0118 11 8 8.1535 -3.3810 0.0157 12 7 10.1077 -2.3308 0.0131 13 6 10.8403 -1.0621 0.0089 14 6 10.8402 -3.5995 0.0188 15 6 11.0928 -4.0402 -1.4000 16 1 10.7430 -3.4354 -2.2236 17 6 11.7712 -5.2148 -1.6467 18 7 11.9920 -5.5991 -2.8849 19 14 12.3780 -6.2598 -0.2221 20 1 11.3265 -7.2373 0.1577 21 1 13.6063 -6.9876 -0.6302 22 1 12.6832 -5.3852 0.9385 23 6 3.5742 -1.2091 0.0060 24 6 2.1953 -1.2008 0.0063 25 1 -0.3634 0.0050 1.0276 26 1 -0.3633 0.8874 -0.5183 27 1 -0.3634 -0.8925 -0.5095 28 1 1.6511 2.1335 -0.0004 29 1 4.1100 2.1467 -0.0104 30 1 6.2385 -1.8730 0.8988 31 1 6.2392 -1.8806 -0.8811 32 1 8.2704 -0.4577 -0.8856 33 1 8.2691 -0.4504 0.8943 34 1 11.0209 -0.7435 1.0356 35 1 11.7931 -1.1943 -0.5034 36 1 10.2516 -0.3044 -0.5083 37 1 11.7921 -3.4672 0.5331 38 1 10.2505 -4.3571 0.5350 39 1 12.4690 -6.4257 -3.0584 40 1 4.1099 -2.1469 0.0110 41 1 1.6511 -2.1336 0.0112 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060617595.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:17 Heat of formation + Delta-G solvation = -77.608233 kcal Electronic energy + Delta-G solvation = -21776.656466 eV Core-core repulsion = 18427.446638 eV Total energy + Delta-G solvation = -3349.209828 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 3.19 seconds Orbital eigenvalues (eV) -41.30440 -40.53423 -39.35024 -36.67911 -34.76612 -34.24851 -33.57714 -31.95542 -30.61025 -28.85921 -27.44372 -26.45296 -24.15283 -23.59823 -22.77134 -20.61304 -19.95831 -19.15500 -18.41920 -17.58632 -17.06986 -16.97117 -16.51228 -16.19614 -16.13497 -15.67466 -15.27569 -14.84355 -14.67009 -14.63322 -14.44645 -14.28322 -14.01642 -13.65207 -13.57300 -13.31326 -13.00582 -12.91870 -12.82109 -12.71589 -12.54870 -12.39171 -12.20910 -12.00508 -11.92210 -11.75114 -10.84020 -10.79277 -10.67658 -9.97124 -9.69037 -9.40832 -8.34430 -6.39897 -0.36002 0.41627 1.33327 1.37101 1.37388 1.46015 1.76782 2.27005 2.31220 2.80046 2.98025 3.00489 3.61629 3.84922 3.91451 3.96188 4.03302 4.07571 4.24032 4.37401 4.41794 4.49581 4.62054 4.64952 4.78140 4.79045 4.81855 4.84196 4.85710 4.93851 4.96972 4.97587 5.09074 5.23440 5.34019 5.41396 5.44953 5.58747 5.60158 5.95505 6.22908 6.44647 6.61268 6.67297 7.20217 7.38636 8.82670 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028125 B = 0.002847 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.314637 B = 9833.280801 C =10423.265001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.055 4.055 3 C -0.140 4.140 4 C -0.070 4.070 5 C -0.197 4.197 6 C 0.408 3.592 7 O -0.483 6.483 8 C -0.147 4.147 9 C -0.116 4.116 10 C 0.498 3.502 11 O -0.590 6.590 12 N -0.609 5.609 13 C 0.076 3.924 14 C 0.222 3.778 15 C -0.537 4.537 16 H 0.026 0.974 17 C 0.009 3.991 18 N -0.946 5.946 19 Si 0.951 3.049 20 H -0.274 1.274 21 H -0.275 1.275 22 H -0.238 1.238 23 C -0.072 4.072 24 C -0.142 4.142 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.150 0.850 29 H 0.130 0.870 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.050 0.950 38 H 0.022 0.978 39 H 0.269 0.731 40 H 0.141 0.859 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.624 14.482 9.874 27.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.056 4.056 3 C -0.158 4.158 4 C -0.088 4.088 5 C -0.197 4.197 6 C 0.288 3.712 7 O -0.360 6.360 8 C -0.184 4.184 9 C -0.156 4.156 10 C 0.287 3.713 11 O -0.471 6.471 12 N -0.340 5.340 13 C -0.066 4.066 14 C 0.100 3.900 15 C -0.576 4.576 16 H 0.045 0.955 17 C -0.189 4.189 18 N -0.586 5.586 19 Si 0.773 3.227 20 H -0.199 1.199 21 H -0.200 1.200 22 H -0.161 1.161 23 C -0.090 4.090 24 C -0.159 4.159 25 H 0.104 0.896 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.167 0.833 29 H 0.148 0.852 30 H 0.132 0.868 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.133 0.867 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.068 0.932 38 H 0.040 0.960 39 H 0.078 0.922 40 H 0.159 0.841 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -20.497 14.376 9.773 26.876 hybrid contribution 0.710 -0.857 -0.208 1.132 sum -19.787 13.520 9.565 25.803 Atomic orbital electron populations 1.20955 0.88717 1.04208 1.03658 1.20622 0.98003 0.92793 0.94141 1.21308 0.93326 0.99138 1.02017 1.21539 0.95001 0.97451 0.94812 1.20478 0.94125 0.95398 1.09747 1.22589 0.88946 0.89951 0.69670 1.90487 1.71705 1.35594 1.38261 1.21744 0.93614 0.96719 1.06340 1.21416 0.94252 0.93851 1.06079 1.21220 0.82461 0.91861 0.75712 1.90619 1.68521 1.35645 1.52311 1.47982 1.06041 1.08526 1.71464 1.21966 0.97654 0.83977 1.02973 1.19362 0.92180 0.83167 0.95342 1.21559 1.36158 1.07462 0.92391 0.95513 1.25892 0.95630 0.98577 0.98780 1.70056 1.42810 1.24255 1.21504 0.85670 0.78105 0.79185 0.79719 1.19943 1.20039 1.16133 1.21732 0.95174 0.97450 0.94629 1.21375 0.93696 0.99128 1.01738 0.89587 0.90150 0.90257 0.83252 0.85174 0.86811 0.87883 0.88098 0.86711 0.90167 0.91478 0.89669 0.93198 0.95971 0.92236 0.84095 0.83320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 10.00 71.23 0.71 -0.20 16 2 C -0.06 -0.77 5.89 -19.79 -0.12 -0.88 16 3 C -0.14 -2.12 9.68 22.23 0.22 -1.91 16 4 C -0.07 -1.39 9.60 22.58 0.22 -1.17 16 5 C -0.20 -4.34 5.87 -20.15 -0.12 -4.46 16 6 C 0.41 10.31 7.12 28.03 0.20 10.51 16 7 O -0.48 -14.17 15.98 -2.97 -0.05 -14.22 16 8 C -0.15 -3.85 3.60 29.85 0.11 -3.74 16 9 C -0.12 -3.40 3.54 29.85 0.11 -3.30 16 10 C 0.50 20.17 7.67 87.66 0.67 20.84 16 11 O -0.59 -28.69 15.56 -3.04 -0.05 -28.74 16 12 N -0.61 -25.24 2.86 -851.14 -2.43 -27.67 16 13 C 0.08 2.30 10.24 127.77 1.31 3.61 16 14 C 0.22 10.94 4.23 85.63 0.36 11.30 16 15 C -0.54 -32.05 9.94 25.60 0.25 -31.79 16 16 H 0.03 1.79 8.06 -2.91 -0.02 1.76 16 17 C 0.01 0.54 5.47 84.65 0.46 1.00 16 18 N -0.95 -60.37 13.96 21.45 0.30 -60.07 16 19 Si 0.95 44.64 27.47 68.60 1.88 46.52 16 20 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.24 -10.03 6.54 99.48 0.65 -9.38 16 23 C -0.07 -1.36 9.47 22.58 0.21 -1.15 16 24 C -0.14 -2.18 9.68 22.23 0.22 -1.96 16 25 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.08 0.46 8.08 -2.39 -0.02 0.44 16 27 H 0.08 0.49 8.08 -2.38 -0.02 0.47 16 28 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 29 H 0.13 2.56 7.65 -2.91 -0.02 2.54 16 30 H 0.11 2.81 8.04 -2.39 -0.02 2.79 16 31 H 0.10 2.83 8.05 -2.39 -0.02 2.81 16 32 H 0.10 2.86 7.36 -2.39 -0.02 2.84 16 33 H 0.11 2.85 8.06 -2.39 -0.02 2.84 16 34 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.07 2.14 8.07 -2.39 -0.02 2.12 16 36 H 0.08 2.17 6.44 -2.39 -0.02 2.16 16 37 H 0.05 2.25 7.13 -2.39 -0.02 2.24 16 38 H 0.02 1.16 6.85 -2.39 -0.02 1.14 16 39 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 40 H 0.14 2.47 7.05 -2.91 -0.02 2.45 16 41 H 0.15 1.62 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -78.97 348.21 5.43 -73.54 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.96 Total: 13.94 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 4.81 Total: -3.31 kcal Atomic # 7 Polarization: -85.61 SS G_CDS: -2.13 Total: -87.74 kcal Atomic # 8 Polarization: -42.86 SS G_CDS: -0.09 Total: -42.96 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.52 kcal Total: -78.97 5.43 -73.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060617595.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.065 kcal (2) G-P(sol) polarization free energy of solvation -78.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.19 seconds