Wall clock time and date at job start Tue Mar 31 2020 05:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35683 * 117.00236 * 2 1 4 4 C 1.38603 * 120.16023 * 0.29692 * 3 2 1 5 5 C 1.38132 * 120.10917 * 180.30537 * 4 3 2 6 6 C 1.38569 * 120.43214 * 359.66868 * 5 4 3 7 7 C 1.50707 * 119.83920 * 180.02562 * 6 5 4 8 8 C 1.37746 * 120.32206 * 0.03226 * 6 5 4 9 9 C 1.39920 * 119.88265 * 359.97438 * 8 6 5 10 10 C 1.46946 * 120.21740 * 180.02562 * 9 8 6 11 11 C 1.35005 * 119.99384 * 0.02562 * 10 9 8 12 12 C 1.46246 * 119.99401 * 180.02562 * 11 10 9 13 13 O 1.21718 * 120.00406 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99734 * 180.02562 * 12 11 10 15 15 C 1.46504 * 119.99858 * 359.97438 * 14 12 11 16 16 C 1.46496 * 120.00258 * 179.97438 * 14 12 11 17 17 C 1.50703 * 109.47468 * 89.99360 * 16 14 12 18 18 H 1.07997 * 119.99356 * 0.02562 * 17 16 14 19 19 C 1.37872 * 120.00292 * 180.02562 * 17 16 14 20 20 N 1.31518 * 119.99761 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00372 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47159 * 59.99669 * 21 19 17 23 23 H 1.48496 * 109.47506 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47108 * 299.99974 * 21 19 17 25 25 H 1.09000 * 109.47546 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46980 * 300.00474 * 1 2 3 27 27 H 1.08998 * 109.47101 * 60.00377 * 1 2 3 28 28 H 1.07999 * 119.94629 * 359.97438 * 4 3 2 29 29 H 1.07998 * 119.78229 * 179.70368 * 5 4 3 30 30 H 1.09000 * 109.47120 * 269.98538 * 7 6 5 31 31 H 1.09002 * 109.46869 * 29.97785 * 7 6 5 32 32 H 1.08990 * 109.47344 * 149.98148 * 7 6 5 33 33 H 1.08004 * 120.06093 * 179.97438 * 8 6 5 34 34 H 1.07995 * 120.00212 * 179.72376 * 10 9 8 35 35 H 1.07999 * 120.00374 * 359.97438 * 11 10 9 36 36 H 1.09002 * 109.46944 * 90.00712 * 15 14 12 37 37 H 1.09001 * 109.47272 * 209.99997 * 15 14 12 38 38 H 1.08996 * 109.47264 * 330.00264 * 15 14 12 39 39 H 1.09002 * 109.47392 * 210.00154 * 16 14 12 40 40 H 1.09004 * 109.47079 * 329.99531 * 16 14 12 41 41 H 0.97009 * 119.99866 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2934 2.3735 0.0062 5 6 1.9217 3.6037 -0.0002 6 6 3.3049 3.6853 -0.0059 7 6 3.9764 5.0345 -0.0122 8 6 4.0692 2.5394 -0.0059 9 6 3.4468 1.2863 0.0003 10 6 4.2550 0.0590 0.0009 11 6 5.6027 0.1385 -0.0041 12 6 6.4071 -1.0829 -0.0042 13 8 5.8615 -2.1710 0.0008 14 7 7.7525 -1.0037 -0.0087 15 6 8.4091 0.3060 -0.0141 16 6 8.5583 -2.2271 -0.0081 17 6 8.8300 -2.6504 -1.4287 18 1 8.4416 -2.0662 -2.2498 19 6 9.5744 -3.7833 -1.6801 20 7 10.0478 -4.4944 -0.6801 21 14 9.9118 -4.3076 -3.4409 22 1 10.6506 -3.2293 -4.1456 23 1 10.7285 -5.5478 -3.4404 24 1 8.6249 -4.5622 -4.1368 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.2148 2.3190 0.0106 29 1 1.3308 4.5077 -0.0001 30 1 4.1344 5.3569 -1.0414 31 1 3.3433 5.7578 0.5018 32 1 4.9368 4.9648 0.4982 33 1 5.1471 2.6080 -0.0108 34 1 3.7710 -0.9063 0.0103 35 1 6.0868 1.1039 -0.0090 36 1 8.5754 0.6333 1.0122 37 1 9.3659 0.2306 -0.5308 38 1 7.7747 1.0283 -0.5277 39 1 9.5031 -2.0397 0.5022 40 1 8.0166 -3.0187 0.5096 41 1 10.5719 -5.2913 -0.8570 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061110421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:45 Heat of formation + Delta-G solvation = -31.486263 kcal Electronic energy + Delta-G solvation = -22024.586220 eV Core-core repulsion = 18677.376391 eV Total energy + Delta-G solvation = -3347.209829 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.41747 -38.82645 -37.87471 -34.82977 -34.11523 -32.54244 -31.99606 -29.90401 -28.07122 -27.73120 -26.18377 -25.78676 -24.36902 -22.73208 -21.43351 -20.05564 -18.34705 -17.97486 -16.80292 -16.44769 -16.13105 -15.94151 -15.31636 -14.86695 -14.63777 -14.31053 -14.17655 -13.90337 -13.90102 -13.61497 -12.85019 -12.63004 -12.40770 -12.32597 -12.20347 -12.09700 -12.03319 -11.75032 -11.23013 -11.13111 -11.04574 -11.02653 -10.83831 -10.49217 -10.19289 -10.10175 -9.58375 -8.89195 -8.68923 -8.37954 -7.89897 -7.51675 -5.98722 -4.03410 0.63069 1.21339 2.19431 3.07073 3.35994 3.39966 3.43706 3.60237 4.03781 4.19491 4.48889 4.52545 4.57952 4.67613 4.81733 4.91727 5.02765 5.06921 5.21914 5.28929 5.33066 5.35228 5.40443 5.42451 5.57469 5.69566 5.77585 5.90069 5.93968 6.00638 6.06859 6.27253 6.37969 6.52245 6.60206 6.76438 7.15935 7.21693 7.51661 7.62127 7.98138 8.29636 8.50721 8.96384 9.18883 9.61428 11.09238 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020140 B = 0.003348 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.928165 B = 8362.083423 C = 9106.732222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.307 6.307 3 C 0.140 3.860 4 C -0.208 4.208 5 C -0.077 4.077 6 C -0.126 4.126 7 C -0.109 4.109 8 C -0.069 4.069 9 C -0.086 4.086 10 C -0.037 4.037 11 C -0.196 4.196 12 C 0.533 3.467 13 O -0.544 6.544 14 N -0.598 5.598 15 C 0.083 3.917 16 C 0.245 3.755 17 C -0.526 4.526 18 H 0.057 0.943 19 C 0.060 3.940 20 N -0.896 5.896 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.276 1.276 25 H 0.102 0.898 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.129 0.871 29 H 0.124 0.876 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.124 0.876 36 H 0.044 0.956 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.032 0.968 40 H 0.044 0.956 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.650 19.596 2.654 25.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.219 6.219 3 C 0.094 3.906 4 C -0.227 4.227 5 C -0.095 4.095 6 C -0.126 4.126 7 C -0.166 4.166 8 C -0.087 4.087 9 C -0.087 4.087 10 C -0.056 4.056 11 C -0.217 4.217 12 C 0.322 3.678 13 O -0.424 6.424 14 N -0.329 5.329 15 C -0.061 4.061 16 C 0.126 3.874 17 C -0.565 4.565 18 H 0.075 0.925 19 C -0.141 4.141 20 N -0.535 5.535 21 Si 0.726 3.274 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.202 1.202 25 H 0.120 0.880 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.147 0.853 29 H 0.142 0.858 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.152 0.848 34 H 0.156 0.844 35 H 0.142 0.858 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.050 0.950 40 H 0.062 0.938 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.689 18.641 2.707 25.166 hybrid contribution 0.016 -0.111 -1.015 1.022 sum -16.673 18.530 1.691 24.984 Atomic orbital electron populations 1.23097 0.78311 1.04248 1.01172 1.86095 1.21332 1.26560 1.87945 1.19176 0.91492 0.84416 0.95480 1.21137 0.99968 0.92142 1.09422 1.20880 0.93930 0.96899 0.97815 1.19734 0.93549 0.95541 1.03773 1.20728 1.00475 0.93123 1.02273 1.21182 1.00083 0.90254 0.97203 1.18432 0.89725 0.93907 1.06653 1.22105 0.93290 0.96882 0.93358 1.23245 0.94653 0.98579 1.05225 1.18106 0.82620 0.88907 0.78155 1.90779 1.71534 1.29524 1.50567 1.48052 1.05550 1.08423 1.70897 1.21667 0.98859 0.85164 1.00384 1.19288 0.89748 0.80930 0.97476 1.21420 1.32736 1.09977 0.92330 0.92489 1.24938 0.95706 0.96060 0.97442 1.69932 1.35909 1.16907 1.30757 0.86549 0.78279 0.77846 0.84693 1.20263 1.21186 1.20165 0.87991 0.92651 0.92633 0.85292 0.85836 0.91331 0.91754 0.91444 0.84767 0.84407 0.85823 0.93747 0.90797 0.92381 0.94975 0.93771 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.90 9.68 -18.75 -0.18 -4.09 16 3 C 0.14 1.78 6.70 -38.64 -0.26 1.52 16 4 C -0.21 -2.07 9.03 -39.49 -0.36 -2.42 16 5 C -0.08 -0.70 9.68 -39.50 -0.38 -1.09 16 6 C -0.13 -1.22 5.87 -104.68 -0.61 -1.84 16 7 C -0.11 -0.77 10.00 36.01 0.36 -0.41 16 8 C -0.07 -0.80 9.05 -39.13 -0.35 -1.15 16 9 C -0.09 -1.19 5.88 -104.93 -0.62 -1.81 16 10 C -0.04 -0.60 9.21 -37.21 -0.34 -0.95 16 11 C -0.20 -3.37 8.61 -37.52 -0.32 -3.69 16 12 C 0.53 12.10 7.60 -13.04 -0.10 12.01 16 13 O -0.54 -14.76 15.81 5.17 0.08 -14.68 16 14 N -0.60 -13.51 2.86 -184.67 -0.53 -14.03 16 15 C 0.08 1.39 10.15 59.85 0.61 1.99 16 16 C 0.24 6.69 5.16 -5.19 -0.03 6.66 16 17 C -0.53 -15.46 9.39 -34.44 -0.32 -15.78 16 18 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 20 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 21 Si 0.90 22.41 29.54 -169.99 -5.02 17.38 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 25 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.35 7.65 -51.93 -0.40 -0.05 16 27 H 0.06 0.36 7.68 -51.93 -0.40 -0.04 16 28 H 0.13 0.95 6.30 -52.49 -0.33 0.62 16 29 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 32 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 33 H 0.13 1.35 6.17 -52.48 -0.32 1.03 16 34 H 0.14 2.54 7.10 -52.49 -0.37 2.17 16 35 H 0.12 1.68 4.22 -52.49 -0.22 1.46 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 38 H 0.06 0.79 6.09 -51.93 -0.32 0.47 16 39 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 40 H 0.04 1.35 7.42 -51.93 -0.39 0.97 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 347.62 15.07 5.24 5.24 Total: -1.00 -35.78 347.62 -7.17 -42.95 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -5.66 Total: -2.16 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -1.84 Total: -4.08 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.21 Total: -40.58 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.10 Total: -18.76 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.78 -7.17 -42.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061110421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.467 kcal (2) G-P(sol) polarization free energy of solvation -35.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds