Wall clock time and date at job start Tue Mar 31 2020 05:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35683 * 117.00236 * 2 1 4 4 C 1.38603 * 120.16023 * 0.29692 * 3 2 1 5 5 C 1.38132 * 120.10917 * 180.30537 * 4 3 2 6 6 C 1.38569 * 120.43214 * 359.66868 * 5 4 3 7 7 C 1.50707 * 119.83920 * 180.02562 * 6 5 4 8 8 C 1.37746 * 120.32206 * 0.03226 * 6 5 4 9 9 C 1.39920 * 119.88265 * 359.97438 * 8 6 5 10 10 C 1.46946 * 120.21740 * 180.02562 * 9 8 6 11 11 C 1.35005 * 119.99384 * 0.02562 * 10 9 8 12 12 C 1.46246 * 119.99401 * 180.02562 * 11 10 9 13 13 O 1.21718 * 120.00406 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99734 * 180.02562 * 12 11 10 15 15 C 1.46504 * 119.99858 * 359.97438 * 14 12 11 16 16 C 1.46496 * 120.00258 * 179.97438 * 14 12 11 17 17 C 1.50703 * 109.47468 * 89.99360 * 16 14 12 18 18 H 1.07997 * 119.99356 * 0.02562 * 17 16 14 19 19 C 1.37872 * 120.00292 * 180.02562 * 17 16 14 20 20 N 1.31518 * 119.99761 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00372 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47159 * 59.99669 * 21 19 17 23 23 H 1.48496 * 109.47506 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47108 * 299.99974 * 21 19 17 25 25 H 1.09000 * 109.47546 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46980 * 300.00474 * 1 2 3 27 27 H 1.08998 * 109.47101 * 60.00377 * 1 2 3 28 28 H 1.07999 * 119.94629 * 359.97438 * 4 3 2 29 29 H 1.07998 * 119.78229 * 179.70368 * 5 4 3 30 30 H 1.09000 * 109.47120 * 269.98538 * 7 6 5 31 31 H 1.09002 * 109.46869 * 29.97785 * 7 6 5 32 32 H 1.08990 * 109.47344 * 149.98148 * 7 6 5 33 33 H 1.08004 * 120.06093 * 179.97438 * 8 6 5 34 34 H 1.07995 * 120.00212 * 179.72376 * 10 9 8 35 35 H 1.07999 * 120.00374 * 359.97438 * 11 10 9 36 36 H 1.09002 * 109.46944 * 90.00712 * 15 14 12 37 37 H 1.09001 * 109.47272 * 209.99997 * 15 14 12 38 38 H 1.08996 * 109.47264 * 330.00264 * 15 14 12 39 39 H 1.09002 * 109.47392 * 210.00154 * 16 14 12 40 40 H 1.09004 * 109.47079 * 329.99531 * 16 14 12 41 41 H 0.97009 * 119.99866 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2934 2.3735 0.0062 5 6 1.9217 3.6037 -0.0002 6 6 3.3049 3.6853 -0.0059 7 6 3.9764 5.0345 -0.0122 8 6 4.0692 2.5394 -0.0059 9 6 3.4468 1.2863 0.0003 10 6 4.2550 0.0590 0.0009 11 6 5.6027 0.1385 -0.0041 12 6 6.4071 -1.0829 -0.0042 13 8 5.8615 -2.1710 0.0008 14 7 7.7525 -1.0037 -0.0087 15 6 8.4091 0.3060 -0.0141 16 6 8.5583 -2.2271 -0.0081 17 6 8.8300 -2.6504 -1.4287 18 1 8.4416 -2.0662 -2.2498 19 6 9.5744 -3.7833 -1.6801 20 7 10.0478 -4.4944 -0.6801 21 14 9.9118 -4.3076 -3.4409 22 1 10.6506 -3.2293 -4.1456 23 1 10.7285 -5.5478 -3.4404 24 1 8.6249 -4.5622 -4.1368 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.2148 2.3190 0.0106 29 1 1.3308 4.5077 -0.0001 30 1 4.1344 5.3569 -1.0414 31 1 3.3433 5.7578 0.5018 32 1 4.9368 4.9648 0.4982 33 1 5.1471 2.6080 -0.0108 34 1 3.7710 -0.9063 0.0103 35 1 6.0868 1.1039 -0.0090 36 1 8.5754 0.6333 1.0122 37 1 9.3659 0.2306 -0.5308 38 1 7.7747 1.0283 -0.5277 39 1 9.5031 -2.0397 0.5022 40 1 8.0166 -3.0187 0.5096 41 1 10.5719 -5.2913 -0.8570 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061110421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:44 Heat of formation + Delta-G solvation = -54.536522 kcal Electronic energy + Delta-G solvation = -22025.585755 eV Core-core repulsion = 18677.376391 eV Total energy + Delta-G solvation = -3348.209363 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.28452 -40.54833 -38.70199 -36.65613 -35.34105 -34.68658 -32.74100 -31.12299 -29.63804 -28.70993 -27.39529 -26.83425 -25.93175 -24.25569 -22.42475 -21.28642 -19.53451 -19.17025 -18.69727 -18.09817 -17.39183 -16.89355 -16.71671 -16.27094 -16.01692 -15.75650 -15.40152 -14.80670 -14.67894 -14.51297 -14.35671 -14.23704 -13.76895 -13.53211 -13.39692 -13.24163 -13.10664 -12.90442 -12.78059 -12.67433 -12.51523 -12.20798 -12.13366 -11.87914 -11.80510 -11.74435 -11.23864 -10.72050 -10.65396 -9.62847 -9.40410 -8.80260 -8.22960 -6.38927 -0.42422 0.42354 1.02783 1.35471 1.40618 1.48141 2.28315 2.32982 2.44786 2.47363 2.86217 3.05541 3.56573 3.75120 3.92176 4.03443 4.11618 4.22740 4.37657 4.38517 4.39590 4.46243 4.61588 4.69179 4.71944 4.74804 4.90985 4.93146 4.95920 5.00672 5.06109 5.17390 5.25578 5.27249 5.44550 5.53742 5.55494 5.66544 5.84394 5.84999 6.04818 6.41764 6.68203 6.77148 7.26118 7.45823 8.83781 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020140 B = 0.003348 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.928165 B = 8362.083423 C = 9106.732222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.340 6.340 3 C 0.127 3.873 4 C -0.208 4.208 5 C -0.065 4.065 6 C -0.129 4.129 7 C -0.108 4.108 8 C -0.069 4.069 9 C -0.124 4.124 10 C -0.013 4.013 11 C -0.212 4.212 12 C 0.523 3.477 13 O -0.609 6.609 14 N -0.605 5.605 15 C 0.077 3.923 16 C 0.258 3.742 17 C -0.547 4.547 18 H 0.052 0.948 19 C 0.006 3.994 20 N -0.929 5.929 21 Si 0.971 3.029 22 H -0.258 1.258 23 H -0.275 1.275 24 H -0.279 1.279 25 H 0.110 0.890 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.156 0.844 29 H 0.158 0.842 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.147 0.853 34 H 0.105 0.895 35 H 0.166 0.834 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.027 0.973 40 H -0.005 1.005 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.756 23.344 1.613 29.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.254 6.254 3 C 0.081 3.919 4 C -0.227 4.227 5 C -0.083 4.083 6 C -0.130 4.130 7 C -0.165 4.165 8 C -0.087 4.087 9 C -0.125 4.125 10 C -0.033 4.033 11 C -0.232 4.232 12 C 0.315 3.685 13 O -0.493 6.493 14 N -0.335 5.335 15 C -0.065 4.065 16 C 0.137 3.863 17 C -0.585 4.585 18 H 0.071 0.929 19 C -0.192 4.192 20 N -0.568 5.568 21 Si 0.795 3.205 22 H -0.182 1.182 23 H -0.200 1.200 24 H -0.205 1.205 25 H 0.128 0.872 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.173 0.827 29 H 0.176 0.824 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.164 0.836 34 H 0.123 0.877 35 H 0.183 0.817 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.113 0.887 39 H 0.045 0.955 40 H 0.014 0.986 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.780 22.450 1.675 28.687 hybrid contribution 0.163 -1.189 -0.627 1.354 sum -17.617 21.262 1.048 27.632 Atomic orbital electron populations 1.23386 0.76071 1.05461 1.02735 1.86057 1.23870 1.27413 1.88038 1.19457 0.91485 0.85340 0.95636 1.21461 1.01268 0.91413 1.08537 1.21376 0.94115 0.97774 0.95060 1.20112 0.94018 0.96175 1.02649 1.20792 1.00867 0.91684 1.03150 1.21389 1.00974 0.89853 0.96503 1.18422 0.90268 0.93391 1.10401 1.22096 0.93425 0.97226 0.90579 1.22967 0.94101 0.97370 1.08743 1.19015 0.82799 0.90008 0.76692 1.90728 1.72648 1.32298 1.53661 1.48073 1.05653 1.09151 1.70621 1.22002 0.98927 0.82818 1.02760 1.18779 0.89250 0.82104 0.96176 1.21685 1.33185 1.10708 0.92943 0.92948 1.25906 0.95191 0.95844 1.02308 1.70055 1.36285 1.17317 1.33183 0.85425 0.78105 0.78198 0.78822 1.18196 1.20026 1.20483 0.87194 0.90930 0.91043 0.82659 0.82434 0.90485 0.90057 0.90914 0.83557 0.87665 0.81731 0.90909 0.91215 0.88719 0.95456 0.98650 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.37 16 2 O -0.34 -8.75 9.68 -90.01 -0.87 -9.62 16 3 C 0.13 3.09 6.70 22.88 0.15 3.25 16 4 C -0.21 -3.52 9.03 22.33 0.20 -3.32 16 5 C -0.07 -0.92 9.68 22.32 0.22 -0.70 16 6 C -0.13 -2.04 5.87 -19.90 -0.12 -2.16 16 7 C -0.11 -1.05 10.00 71.24 0.71 -0.34 16 8 C -0.07 -1.43 9.05 22.56 0.20 -1.23 16 9 C -0.12 -3.35 5.88 -20.07 -0.12 -3.46 16 10 C -0.01 -0.45 9.21 23.81 0.22 -0.23 16 11 C -0.21 -7.35 8.61 23.61 0.20 -7.15 16 12 C 0.52 24.93 7.60 86.32 0.66 25.59 16 13 O -0.61 -35.68 15.81 -4.41 -0.07 -35.75 16 14 N -0.61 -28.24 2.86 -856.38 -2.45 -30.69 16 15 C 0.08 2.46 10.15 127.77 1.30 3.76 16 16 C 0.26 14.91 5.16 85.63 0.44 15.35 16 17 C -0.55 -33.28 9.39 25.60 0.24 -33.04 16 18 H 0.05 3.16 7.81 -2.91 -0.02 3.13 16 19 C 0.01 0.38 5.46 84.65 0.46 0.85 16 20 N -0.93 -58.19 13.29 21.45 0.28 -57.90 16 21 Si 0.97 46.50 29.54 68.60 2.03 48.53 16 22 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 24 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 25 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.07 0.78 7.65 -2.38 -0.02 0.76 16 27 H 0.07 0.79 7.68 -2.39 -0.02 0.77 16 28 H 0.16 1.70 6.30 -2.91 -0.02 1.69 16 29 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 30 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.08 0.53 8.08 -2.39 -0.02 0.52 16 32 H 0.07 0.65 8.08 -2.39 -0.02 0.63 16 33 H 0.15 2.51 6.17 -2.91 -0.02 2.49 16 34 H 0.11 4.25 7.10 -2.91 -0.02 4.23 16 35 H 0.17 4.16 4.22 -2.91 -0.01 4.15 16 36 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.07 2.29 8.07 -2.39 -0.02 2.27 16 38 H 0.09 2.33 6.09 -2.39 -0.01 2.31 16 39 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16 40 H 0.00 -0.31 7.42 -2.38 -0.02 -0.33 16 41 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 Total: -1.00 -84.06 347.62 5.84 -78.22 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 1.03 Total: 8.70 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 5.88 Total: -1.48 kcal Atomic # 7 Polarization: -86.43 SS G_CDS: -2.16 Total: -88.59 kcal Atomic # 8 Polarization: -44.44 SS G_CDS: -0.94 Total: -45.38 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -84.06 5.84 -78.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061110421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.681 kcal (2) G-P(sol) polarization free energy of solvation -84.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds