Wall clock time and date at job start Tue Mar 31 2020 06:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38290 * 119.96945 * 2 1 4 4 C 1.38244 * 120.10903 * 179.97438 * 3 2 1 5 5 C 1.38167 * 120.05807 * 0.02562 * 4 3 2 6 6 C 1.38713 * 119.94005 * 0.02562 * 5 4 3 7 7 O 1.35909 * 120.05462 * 179.97438 * 6 5 4 8 8 C 1.42893 * 116.99845 * 175.45430 * 7 6 5 9 9 H 1.08998 * 109.47656 * 36.98485 * 8 7 6 10 10 C 1.53006 * 109.46998 * 276.98357 * 8 7 6 11 11 C 1.50707 * 109.46913 * 156.98687 * 8 7 6 12 12 O 1.21286 * 119.99872 * 12.58437 * 11 8 7 13 13 N 1.34779 * 119.99870 * 192.58387 * 11 8 7 14 14 C 1.37097 * 119.99551 * 184.60212 * 13 11 8 15 15 H 1.07999 * 119.99439 * 222.98148 * 14 13 11 16 16 C 1.38946 * 120.00331 * 42.98837 * 14 13 11 17 17 N 1.31405 * 119.99951 * 196.25308 * 16 14 13 18 18 Si 1.86798 * 119.99996 * 16.25116 * 16 14 13 19 19 H 1.48499 * 109.47150 * 264.42209 * 18 16 14 20 20 H 1.48505 * 109.47139 * 24.41834 * 18 16 14 21 21 H 1.48489 * 109.47308 * 144.41956 * 18 16 14 22 22 C 1.46500 * 119.99741 * 4.60583 * 13 11 8 23 23 C 1.53001 * 117.49396 * 184.49734 * 22 13 11 24 24 C 1.52999 * 117.49608 * 115.84072 * 22 13 11 25 25 C 1.38120 * 119.97512 * 180.29674 * 2 1 3 26 26 H 1.09007 * 109.47302 * 90.00173 * 1 2 3 27 27 H 1.08994 * 109.47087 * 210.00152 * 1 2 3 28 28 H 1.09003 * 109.47095 * 330.00022 * 1 2 3 29 29 H 1.07997 * 119.94675 * 359.97438 * 3 2 1 30 30 H 1.08003 * 119.97535 * 180.02562 * 4 3 2 31 31 H 1.07996 * 120.02797 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.46894 * 306.36455 * 10 8 7 33 33 H 1.08993 * 109.46610 * 66.36561 * 10 8 7 34 34 H 1.09004 * 109.46650 * 186.36404 * 10 8 7 35 35 H 0.97000 * 120.00483 * 179.97438 * 17 16 14 36 36 H 1.08999 * 115.55040 * 330.16408 * 22 13 11 37 37 H 1.09000 * 117.50021 * 0.02562 * 23 22 13 38 38 H 1.09000 * 117.49972 * 145.02042 * 23 22 13 39 39 H 1.09007 * 117.49556 * 214.97211 * 24 22 13 40 40 H 1.08994 * 117.50311 * 359.97111 * 24 22 13 41 41 H 1.08000 * 120.02749 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5802 1.2014 0.0005 5 6 4.2752 0.0072 0.0005 6 6 3.5845 -1.1958 -0.0005 7 8 4.2658 -2.3718 -0.0011 8 6 3.4927 -3.5693 0.0987 9 1 2.5658 -3.4514 -0.4626 10 6 3.1674 -3.8454 1.5681 11 6 4.2792 -4.7237 -0.4671 12 8 5.4625 -4.5949 -0.7000 13 7 3.6677 -5.8990 -0.7142 14 6 4.4006 -6.9768 -1.1394 15 1 4.0266 -7.6040 -1.9351 16 6 5.6243 -7.2624 -0.5465 17 7 6.4686 -8.0752 -1.1408 18 14 6.0694 -6.4907 1.0954 19 1 6.8813 -5.2690 0.8643 20 1 4.8276 -6.1291 1.8252 21 1 6.8529 -7.4605 1.9020 22 6 2.2200 -6.0247 -0.5286 23 6 1.6005 -7.4101 -0.7235 24 6 1.3715 -6.3150 -1.7682 25 6 2.1971 -1.1964 -0.0062 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6564 2.1325 -0.0004 30 1 4.1176 2.1382 0.0010 31 1 5.3551 0.0104 0.0005 32 1 4.0894 -3.8512 2.1494 33 1 2.5045 -3.0670 1.9458 34 1 2.6765 -4.8147 1.6556 35 1 7.3231 -8.2744 -0.7271 36 1 1.7870 -5.3832 0.2388 37 1 2.2702 -8.2280 -0.9893 38 1 0.7596 -7.6798 -0.0845 39 1 0.3799 -5.8647 -1.8161 40 1 1.8903 -6.4120 -2.7219 41 1 1.6571 -2.1318 -0.0115 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065894460.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:24 Heat of formation + Delta-G solvation = -0.816717 kcal Electronic energy + Delta-G solvation = -23602.287742 eV Core-core repulsion = 20256.407844 eV Total energy + Delta-G solvation = -3345.879898 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.40400 -39.13353 -37.45886 -36.33387 -33.04776 -32.89906 -31.95443 -30.90418 -29.80219 -26.97902 -25.59995 -24.00595 -22.36805 -21.84534 -21.42946 -21.11245 -19.64153 -17.76318 -17.13481 -16.33096 -15.94625 -15.54680 -15.43557 -15.02193 -14.71323 -14.14684 -13.85371 -13.68779 -13.30604 -13.27252 -13.16895 -13.04458 -12.46316 -12.41556 -12.21911 -12.08247 -11.58636 -11.49302 -11.37099 -11.11591 -11.03001 -10.91190 -10.59843 -10.29385 -10.14310 -9.99289 -9.76575 -8.81650 -8.63253 -8.51393 -8.03302 -7.58149 -6.25382 -4.04814 1.33277 1.49384 3.16508 3.20129 3.39980 3.60815 3.69916 3.78484 4.34324 4.41217 4.52170 4.70050 4.81625 4.90258 4.99965 5.17478 5.19490 5.23177 5.30548 5.32722 5.36490 5.46157 5.49035 5.57039 5.58825 5.66587 5.69326 5.79972 5.85254 6.06480 6.08762 6.15235 6.28651 6.39764 6.45117 6.54889 6.57076 6.79080 6.83463 7.57015 7.77115 7.90684 8.66196 8.81283 9.33722 9.68526 10.79691 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019674 B = 0.005485 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.827649 B = 5103.631292 C = 6013.586969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.048 4.048 3 C -0.169 4.169 4 C -0.077 4.077 5 C -0.161 4.161 6 C 0.144 3.856 7 O -0.281 6.281 8 C 0.069 3.931 9 H 0.089 0.911 10 C -0.178 4.178 11 C 0.459 3.541 12 O -0.520 6.520 13 N -0.430 5.430 14 C -0.343 4.343 15 H 0.098 0.902 16 C 0.092 3.908 17 N -0.864 5.864 18 Si 0.902 3.098 19 H -0.255 1.255 20 H -0.274 1.274 21 H -0.305 1.305 22 C 0.051 3.949 23 C -0.168 4.168 24 C -0.198 4.198 25 C -0.216 4.216 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.119 0.881 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.274 0.726 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.526 13.530 4.554 19.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.048 4.048 3 C -0.187 4.187 4 C -0.095 4.095 5 C -0.180 4.180 6 C 0.097 3.903 7 O -0.193 6.193 8 C 0.009 3.991 9 H 0.107 0.893 10 C -0.236 4.236 11 C 0.247 3.753 12 O -0.400 6.400 13 N -0.152 5.152 14 C -0.469 4.469 15 H 0.115 0.885 16 C -0.118 4.118 17 N -0.498 5.498 18 Si 0.732 3.268 19 H -0.180 1.180 20 H -0.199 1.199 21 H -0.234 1.234 22 C -0.055 4.055 23 C -0.205 4.205 24 C -0.237 4.237 25 C -0.234 4.234 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.137 0.863 30 H 0.144 0.856 31 H 0.148 0.852 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.115 0.885 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.507 13.438 4.398 18.877 hybrid contribution 0.027 0.173 0.783 0.803 sum -12.480 13.611 5.181 19.179 Atomic orbital electron populations 1.20810 0.91206 1.02711 1.02428 1.19670 0.95829 0.92501 0.96823 1.20861 0.94187 0.97265 1.06424 1.20897 0.94062 0.97049 0.97505 1.20465 1.00613 0.89726 1.07151 1.19182 0.90601 0.86524 0.93946 1.86280 1.34701 1.11391 1.86935 1.22342 0.95039 0.84159 0.97550 0.89321 1.22433 1.03249 1.02959 0.94955 1.19698 0.88708 0.82803 0.84099 1.90580 1.15123 1.81306 1.52946 1.42998 1.04029 1.08448 1.59769 1.18682 1.02452 1.06093 1.19637 0.88472 1.25266 0.95006 0.93728 0.97778 1.69707 1.07660 1.34903 1.37560 0.86483 0.79337 0.79397 0.81582 1.18034 1.19909 1.23420 1.21975 0.83775 1.00745 0.98976 1.23167 1.02082 0.93476 1.01796 1.23323 1.00334 1.04401 0.95622 1.21177 0.93169 0.98951 1.10126 0.91004 0.91505 0.91507 0.86272 0.85598 0.85204 0.90968 0.91469 0.89925 0.91643 0.87212 0.86776 0.89307 0.89343 0.88533 0.85281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.01 36.00 0.36 -0.63 16 2 C -0.05 -0.57 5.88 -104.65 -0.62 -1.18 16 3 C -0.17 -1.89 9.70 -39.56 -0.38 -2.27 16 4 C -0.08 -0.91 10.04 -39.61 -0.40 -1.31 16 5 C -0.16 -2.35 9.99 -39.43 -0.39 -2.75 16 6 C 0.14 2.37 6.56 -39.22 -0.26 2.11 16 7 O -0.28 -5.66 9.37 -39.04 -0.37 -6.03 16 8 C 0.07 1.32 1.83 -27.88 -0.05 1.27 16 9 H 0.09 1.46 5.26 -51.93 -0.27 1.18 16 10 C -0.18 -2.93 8.62 37.16 0.32 -2.61 16 11 C 0.46 11.21 4.94 -10.98 -0.05 11.16 16 12 O -0.52 -15.12 12.36 -14.04 -0.17 -15.30 16 13 N -0.43 -10.20 2.51 -107.73 -0.27 -10.47 16 14 C -0.34 -9.49 8.41 -14.93 -0.13 -9.62 16 15 H 0.10 2.79 7.41 -52.49 -0.39 2.40 16 16 C 0.09 2.69 4.93 -17.47 -0.09 2.60 16 17 N -0.86 -26.30 13.96 55.50 0.77 -25.53 16 18 Si 0.90 24.15 24.63 -169.99 -4.19 19.96 16 19 H -0.25 -7.33 6.43 56.52 0.36 -6.97 16 20 H -0.27 -6.79 6.80 56.52 0.38 -6.41 16 21 H -0.31 -7.98 7.11 56.52 0.40 -7.58 16 22 C 0.05 0.92 5.31 -67.93 -0.36 0.56 16 23 C -0.17 -2.75 9.80 -26.69 -0.26 -3.02 16 24 C -0.20 -3.13 10.34 -26.69 -0.28 -3.40 16 25 C -0.22 -3.00 8.07 -39.44 -0.32 -3.32 16 26 H 0.07 0.57 8.14 -51.92 -0.42 0.14 16 27 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 28 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 29 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 31 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.07 0.89 7.40 -51.93 -0.38 0.51 16 34 H 0.08 1.29 6.03 -51.93 -0.31 0.98 16 35 H 0.27 7.87 8.31 -40.82 -0.34 7.53 16 36 H 0.11 1.66 5.23 -51.93 -0.27 1.39 16 37 H 0.11 2.17 6.73 -51.93 -0.35 1.82 16 38 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.09 1.11 8.14 -51.92 -0.42 0.68 16 40 H 0.10 1.71 8.14 -51.93 -0.42 1.28 16 41 H 0.13 1.65 5.68 -52.49 -0.30 1.35 16 LS Contribution 330.68 15.07 4.98 4.98 Total: -1.00 -34.09 330.68 -7.83 -41.92 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -5.69 Total: 2.85 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -2.90 Total: -12.40 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.50 Total: -36.00 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.54 Total: -21.32 kcal Atomic # 14 Polarization: 24.15 SS G_CDS: -4.19 Total: 19.96 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.09 -7.83 -41.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065894460.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.107 kcal (2) G-P(sol) polarization free energy of solvation -34.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds