Wall clock time and date at job start Tue Mar 31 2020 06:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38290 * 119.96945 * 2 1 4 4 C 1.38244 * 120.10903 * 179.97438 * 3 2 1 5 5 C 1.38167 * 120.05807 * 0.02562 * 4 3 2 6 6 C 1.38713 * 119.94005 * 0.02562 * 5 4 3 7 7 O 1.35909 * 120.05462 * 179.97438 * 6 5 4 8 8 C 1.42893 * 116.99845 * 175.45430 * 7 6 5 9 9 H 1.08998 * 109.47656 * 36.98485 * 8 7 6 10 10 C 1.53006 * 109.46998 * 276.98357 * 8 7 6 11 11 C 1.50707 * 109.46913 * 156.98687 * 8 7 6 12 12 O 1.21286 * 119.99872 * 12.58437 * 11 8 7 13 13 N 1.34779 * 119.99870 * 192.58387 * 11 8 7 14 14 C 1.37097 * 119.99551 * 184.60212 * 13 11 8 15 15 H 1.07999 * 119.99439 * 222.98148 * 14 13 11 16 16 C 1.38946 * 120.00331 * 42.98837 * 14 13 11 17 17 N 1.31405 * 119.99951 * 196.25308 * 16 14 13 18 18 Si 1.86798 * 119.99996 * 16.25116 * 16 14 13 19 19 H 1.48499 * 109.47150 * 264.42209 * 18 16 14 20 20 H 1.48505 * 109.47139 * 24.41834 * 18 16 14 21 21 H 1.48489 * 109.47308 * 144.41956 * 18 16 14 22 22 C 1.46500 * 119.99741 * 4.60583 * 13 11 8 23 23 C 1.53001 * 117.49396 * 184.49734 * 22 13 11 24 24 C 1.52999 * 117.49608 * 115.84072 * 22 13 11 25 25 C 1.38120 * 119.97512 * 180.29674 * 2 1 3 26 26 H 1.09007 * 109.47302 * 90.00173 * 1 2 3 27 27 H 1.08994 * 109.47087 * 210.00152 * 1 2 3 28 28 H 1.09003 * 109.47095 * 330.00022 * 1 2 3 29 29 H 1.07997 * 119.94675 * 359.97438 * 3 2 1 30 30 H 1.08003 * 119.97535 * 180.02562 * 4 3 2 31 31 H 1.07996 * 120.02797 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.46894 * 306.36455 * 10 8 7 33 33 H 1.08993 * 109.46610 * 66.36561 * 10 8 7 34 34 H 1.09004 * 109.46650 * 186.36404 * 10 8 7 35 35 H 0.97000 * 120.00483 * 179.97438 * 17 16 14 36 36 H 1.08999 * 115.55040 * 330.16408 * 22 13 11 37 37 H 1.09000 * 117.50021 * 0.02562 * 23 22 13 38 38 H 1.09000 * 117.49972 * 145.02042 * 23 22 13 39 39 H 1.09007 * 117.49556 * 214.97211 * 24 22 13 40 40 H 1.08994 * 117.50311 * 359.97111 * 24 22 13 41 41 H 1.08000 * 120.02749 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5802 1.2014 0.0005 5 6 4.2752 0.0072 0.0005 6 6 3.5845 -1.1958 -0.0005 7 8 4.2658 -2.3718 -0.0011 8 6 3.4927 -3.5693 0.0987 9 1 2.5658 -3.4514 -0.4626 10 6 3.1674 -3.8454 1.5681 11 6 4.2792 -4.7237 -0.4671 12 8 5.4625 -4.5949 -0.7000 13 7 3.6677 -5.8990 -0.7142 14 6 4.4006 -6.9768 -1.1394 15 1 4.0266 -7.6040 -1.9351 16 6 5.6243 -7.2624 -0.5465 17 7 6.4686 -8.0752 -1.1408 18 14 6.0694 -6.4907 1.0954 19 1 6.8813 -5.2690 0.8643 20 1 4.8276 -6.1291 1.8252 21 1 6.8529 -7.4605 1.9020 22 6 2.2200 -6.0247 -0.5286 23 6 1.6005 -7.4101 -0.7235 24 6 1.3715 -6.3150 -1.7682 25 6 2.1971 -1.1964 -0.0062 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6564 2.1325 -0.0004 30 1 4.1176 2.1382 0.0010 31 1 5.3551 0.0104 0.0005 32 1 4.0894 -3.8512 2.1494 33 1 2.5045 -3.0670 1.9458 34 1 2.6765 -4.8147 1.6556 35 1 7.3231 -8.2744 -0.7271 36 1 1.7870 -5.3832 0.2388 37 1 2.2702 -8.2280 -0.9893 38 1 0.7596 -7.6798 -0.0845 39 1 0.3799 -5.8647 -1.8161 40 1 1.8903 -6.4120 -2.7219 41 1 1.6571 -2.1318 -0.0115 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065894460.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:24 Heat of formation + Delta-G solvation = -22.170930 kcal Electronic energy + Delta-G solvation = -23603.213730 eV Core-core repulsion = 20256.407844 eV Total energy + Delta-G solvation = -3346.805886 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.79060 -40.62660 -38.68270 -37.96471 -35.01695 -34.10178 -33.47775 -32.44997 -30.84962 -27.78837 -27.49542 -25.47528 -23.69159 -23.10085 -22.59756 -22.42020 -21.39500 -19.06368 -18.84692 -18.01118 -17.31577 -17.07983 -16.64861 -16.57455 -16.11230 -15.38832 -15.26634 -15.24716 -14.81816 -14.68047 -14.36643 -14.32265 -14.03116 -13.63211 -13.37685 -13.32310 -13.11079 -12.77179 -12.73417 -12.52962 -12.31973 -12.18806 -12.10980 -11.95825 -11.73501 -11.58987 -11.28428 -10.86648 -10.38461 -9.74812 -9.47578 -9.12275 -8.49546 -6.26366 0.38167 0.48970 1.11355 1.24780 1.42611 1.67445 1.86515 2.34160 2.74517 2.82171 2.91165 3.16043 3.48395 3.66552 3.84473 3.86975 3.98484 4.00915 4.11183 4.19903 4.26355 4.35708 4.44479 4.51736 4.58264 4.73303 4.82401 4.88216 4.89917 4.90501 4.96424 5.02734 5.22159 5.32094 5.39083 5.46120 5.50921 5.62013 5.66550 5.75343 5.91703 6.41429 6.66466 6.79749 7.22236 7.72450 8.58864 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019674 B = 0.005485 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.827649 B = 5103.631292 C = 6013.586969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.048 4.048 3 C -0.164 4.164 4 C -0.074 4.074 5 C -0.186 4.186 6 C 0.108 3.892 7 O -0.321 6.321 8 C 0.080 3.920 9 H 0.120 0.880 10 C -0.173 4.173 11 C 0.447 3.553 12 O -0.581 6.581 13 N -0.441 5.441 14 C -0.331 4.331 15 H 0.075 0.925 16 C 0.044 3.956 17 N -0.909 5.909 18 Si 0.947 3.053 19 H -0.293 1.293 20 H -0.243 1.243 21 H -0.299 1.299 22 C 0.025 3.975 23 C -0.163 4.163 24 C -0.179 4.179 25 C -0.221 4.221 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.152 0.848 30 H 0.154 0.846 31 H 0.117 0.883 32 H 0.048 0.952 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.273 0.727 36 H 0.152 0.848 37 H 0.077 0.923 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.067 0.933 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.220 16.074 6.002 25.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.048 4.048 3 C -0.182 4.182 4 C -0.092 4.092 5 C -0.204 4.204 6 C 0.063 3.937 7 O -0.234 6.234 8 C 0.021 3.979 9 H 0.137 0.863 10 C -0.231 4.231 11 C 0.238 3.762 12 O -0.465 6.465 13 N -0.162 5.162 14 C -0.458 4.458 15 H 0.092 0.908 16 C -0.161 4.161 17 N -0.546 5.546 18 Si 0.776 3.224 19 H -0.221 1.221 20 H -0.166 1.166 21 H -0.228 1.228 22 C -0.079 4.079 23 C -0.201 4.201 24 C -0.217 4.217 25 C -0.239 4.239 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.170 0.830 30 H 0.171 0.829 31 H 0.136 0.864 32 H 0.067 0.933 33 H 0.123 0.877 34 H 0.113 0.887 35 H 0.083 0.917 36 H 0.169 0.831 37 H 0.096 0.904 38 H 0.151 0.849 39 H 0.155 0.845 40 H 0.086 0.914 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -17.279 15.973 5.861 24.249 hybrid contribution 1.384 -0.453 0.196 1.469 sum -15.895 15.520 6.057 23.026 Atomic orbital electron populations 1.20893 0.88507 1.04186 1.03448 1.20121 0.97755 0.91822 0.95134 1.21331 0.93931 0.98603 1.04287 1.21238 0.94829 0.96916 0.96172 1.20654 1.00503 0.90655 1.08623 1.19506 0.92010 0.85462 0.96734 1.86217 1.36441 1.12625 1.88153 1.22198 0.94437 0.82104 0.99178 0.86263 1.22442 1.03036 1.04980 0.92607 1.20790 0.88487 0.84216 0.82734 1.90540 1.18082 1.82551 1.55313 1.43166 1.06459 1.07294 1.59313 1.18582 1.02511 1.06153 1.18573 0.90783 1.25878 0.95510 0.94447 1.00238 1.69790 1.08361 1.37415 1.39060 0.85751 0.79796 0.77059 0.79759 1.22080 1.16619 1.22814 1.22445 0.80282 1.03198 1.01949 1.23224 1.02433 0.91724 1.02686 1.23383 1.01504 1.03481 0.93360 1.21342 0.91932 1.00492 1.10146 0.90033 0.90562 0.89644 0.82984 0.82874 0.86447 0.93298 0.87671 0.88681 0.91744 0.83085 0.90393 0.84906 0.84481 0.91404 0.84087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.01 71.24 0.71 -0.64 16 2 C -0.05 -0.93 5.88 -19.88 -0.12 -1.05 16 3 C -0.16 -2.97 9.70 22.28 0.22 -2.75 16 4 C -0.07 -1.55 10.04 22.25 0.22 -1.33 16 5 C -0.19 -5.38 9.99 22.37 0.22 -5.15 16 6 C 0.11 3.47 6.56 22.50 0.15 3.61 16 7 O -0.32 -13.06 9.37 -73.80 -0.69 -13.76 16 8 C 0.08 2.96 1.83 29.85 0.05 3.01 16 9 H 0.12 3.56 5.26 -2.39 -0.01 3.54 16 10 C -0.17 -5.22 8.62 71.98 0.62 -4.60 16 11 C 0.45 22.10 4.94 87.66 0.43 22.54 16 12 O -0.58 -35.39 12.36 15.68 0.19 -35.20 16 13 N -0.44 -20.87 2.51 -613.13 -1.54 -22.41 16 14 C -0.33 -18.96 8.41 84.04 0.71 -18.26 16 15 H 0.07 4.49 7.41 -2.91 -0.02 4.46 16 16 C 0.04 2.66 4.93 84.93 0.42 3.08 16 17 N -0.91 -58.26 13.96 21.66 0.30 -57.96 16 18 Si 0.95 51.73 24.63 68.60 1.69 53.42 16 19 H -0.29 -17.77 6.43 99.48 0.64 -17.13 16 20 H -0.24 -11.74 6.80 99.48 0.68 -11.07 16 21 H -0.30 -15.73 7.11 99.48 0.71 -15.02 16 22 C 0.02 0.83 5.31 44.99 0.24 1.06 16 23 C -0.16 -4.92 9.80 30.62 0.30 -4.62 16 24 C -0.18 -5.08 10.34 30.62 0.32 -4.76 16 25 C -0.22 -5.47 8.07 22.36 0.18 -5.29 16 26 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.08 0.79 8.09 -2.39 -0.02 0.77 16 28 H 0.08 0.72 8.09 -2.39 -0.02 0.71 16 29 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 30 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 31 H 0.12 3.52 8.06 -2.91 -0.02 3.49 16 32 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.10 2.36 7.40 -2.39 -0.02 2.34 16 34 H 0.09 2.58 6.03 -2.39 -0.01 2.57 16 35 H 0.27 16.61 8.31 -92.71 -0.77 15.84 16 36 H 0.15 3.78 5.23 -2.39 -0.01 3.76 16 37 H 0.08 2.96 6.73 -2.39 -0.02 2.94 16 38 H 0.13 2.84 8.14 -2.39 -0.02 2.83 16 39 H 0.14 2.61 8.14 -2.38 -0.02 2.59 16 40 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.14 3.00 5.68 -2.91 -0.02 2.99 16 Total: -1.00 -82.15 330.68 5.57 -76.59 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.94 Total: 14.45 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: 4.68 Total: -15.14 kcal Atomic # 7 Polarization: -79.13 SS G_CDS: -1.24 Total: -80.37 kcal Atomic # 8 Polarization: -48.46 SS G_CDS: -0.50 Total: -48.96 kcal Atomic # 14 Polarization: 51.73 SS G_CDS: 1.69 Total: 53.42 kcal Total: -82.15 5.57 -76.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065894460.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.418 kcal (2) G-P(sol) polarization free energy of solvation -82.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds