Wall clock time and date at job start Tue Mar 31 2020 06:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38282 * 119.94620 * 2 1 4 4 C 1.38126 * 120.05690 * 179.97438 * 3 2 1 5 5 C 1.38760 * 119.94348 * 0.04225 * 4 3 2 6 6 O 1.35892 * 120.05672 * 180.25399 * 5 4 3 7 7 C 1.42901 * 116.99906 * 359.72528 * 6 5 4 8 8 C 1.50699 * 109.47036 * 179.97438 * 7 6 5 9 9 O 1.21289 * 120.00118 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00182 * 179.97438 * 8 7 6 11 11 C 1.37093 * 120.00303 * 179.97438 * 10 8 7 12 12 H 1.08008 * 119.99988 * 140.09483 * 11 10 8 13 13 C 1.38948 * 120.00318 * 320.10219 * 11 10 8 14 14 N 1.31417 * 120.00285 * 162.05340 * 13 11 10 15 15 Si 1.86802 * 119.99682 * 342.05165 * 13 11 10 16 16 H 1.48497 * 109.46898 * 93.80906 * 15 13 11 17 17 H 1.48507 * 109.46915 * 213.80491 * 15 13 11 18 18 H 1.48500 * 109.47059 * 333.80539 * 15 13 11 19 19 C 1.46501 * 119.99785 * 0.02562 * 10 8 7 20 20 C 1.52997 * 117.49995 * 182.28205 * 19 10 8 21 21 C 1.52995 * 60.00245 * 252.51257 * 20 19 10 22 22 C 1.38717 * 119.88815 * 359.97438 * 5 4 3 23 23 C 1.50696 * 120.02836 * 180.02562 * 22 5 4 24 24 C 1.38170 * 119.94233 * 359.97438 * 22 5 4 25 25 H 1.09001 * 109.47006 * 269.97661 * 1 2 3 26 26 H 1.09000 * 109.47533 * 29.97497 * 1 2 3 27 27 H 1.09000 * 109.47649 * 149.97888 * 1 2 3 28 28 H 1.07991 * 119.97283 * 0.02562 * 3 2 1 29 29 H 1.07998 * 120.03043 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.47461 * 299.99671 * 7 6 5 31 31 H 1.08997 * 109.47510 * 60.00249 * 7 6 5 32 32 H 0.97001 * 119.99782 * 179.97438 * 14 13 11 33 33 H 1.08998 * 115.55122 * 327.99453 * 19 10 8 34 34 H 1.08997 * 117.50085 * 0.02562 * 20 19 10 35 35 H 1.09002 * 117.50039 * 145.01845 * 20 19 10 36 36 H 1.09001 * 117.49866 * 252.50537 * 21 20 19 37 37 H 1.08996 * 117.51831 * 107.48545 * 21 20 19 38 38 H 1.09000 * 109.47302 * 89.99558 * 23 22 5 39 39 H 1.08997 * 109.47027 * 210.00168 * 23 22 5 40 40 H 1.09000 * 109.46620 * 329.99562 * 23 22 5 41 41 H 1.07999 * 119.97127 * 179.97438 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1982 0.0000 4 6 3.5785 1.2009 0.0005 5 6 4.2734 -0.0002 0.0002 6 8 5.6323 -0.0002 0.0059 7 6 6.2811 1.2730 0.0060 8 6 7.7751 1.0755 0.0134 9 8 8.2387 -0.0453 0.0176 10 7 8.5962 2.1443 0.0142 11 6 9.9553 1.9646 0.0215 12 1 10.5877 2.6034 -0.5774 13 6 10.5193 0.9607 0.7990 14 7 11.7436 0.5499 0.5550 15 14 9.5373 0.1948 2.1914 16 1 8.8503 -1.0262 1.6993 17 1 10.4535 -0.1666 3.3029 18 1 8.5276 1.1685 2.6789 19 6 8.0363 3.4981 0.0086 20 6 9.0197 4.6690 -0.0442 21 6 8.2645 4.3621 1.2505 22 6 3.5786 -1.2008 -0.0002 23 6 4.3301 -2.5070 0.0000 24 6 2.1969 -1.1980 0.0004 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3634 -0.8898 -0.5141 28 1 1.6560 2.1327 0.0004 29 1 4.1172 2.1369 0.0010 30 1 5.9921 1.8282 -0.8863 31 1 5.9846 1.8319 0.8936 32 1 12.1374 -0.1507 1.0981 33 1 7.0883 3.6125 -0.5169 34 1 10.0831 4.4322 -0.0751 35 1 8.7187 5.5541 -0.6047 36 1 7.4667 5.0453 1.5419 37 1 8.8308 3.9232 2.0719 38 1 4.5110 -2.8220 1.0277 39 1 3.7401 -3.2657 -0.5141 40 1 5.2829 -2.3780 -0.5135 41 1 1.6555 -2.1325 -0.0003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065895105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:22 Heat of formation + Delta-G solvation = -6.986081 kcal Electronic energy + Delta-G solvation = -23100.516730 eV Core-core repulsion = 19754.369309 eV Total energy + Delta-G solvation = -3346.147421 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.28772 -39.14502 -37.47972 -36.35727 -33.21984 -32.95439 -31.60682 -31.55190 -28.66625 -27.18084 -26.01140 -24.56407 -22.37706 -21.92281 -21.37993 -20.63308 -19.41961 -17.95083 -17.15480 -16.48844 -15.99033 -15.76338 -15.18357 -14.91175 -14.33017 -14.25440 -14.04116 -13.67363 -13.36763 -13.25596 -13.15173 -12.96766 -12.72041 -12.52307 -12.27173 -11.90272 -11.69692 -11.63361 -11.27299 -11.20127 -10.84497 -10.73020 -10.71097 -10.38600 -10.11099 -10.02355 -9.66910 -8.80209 -8.60966 -8.50830 -7.88043 -7.59917 -6.23259 -4.02474 1.33474 1.44943 3.15070 3.22461 3.46227 3.67616 3.72543 3.76269 4.37073 4.40559 4.59927 4.75197 4.78606 4.89240 5.03849 5.14746 5.24082 5.27405 5.33665 5.38670 5.46160 5.46230 5.48052 5.50193 5.64860 5.67754 5.70680 5.81015 5.86516 5.94208 6.08228 6.17110 6.29801 6.37697 6.53309 6.57064 6.59191 6.77265 6.84763 7.53958 7.76632 7.88121 8.66103 8.79643 9.34537 9.67114 10.79881 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020406 B = 0.004832 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.805133 B = 5793.090069 C = 6765.748796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.131 4.131 3 C -0.086 4.086 4 C -0.206 4.206 5 C 0.130 3.870 6 O -0.283 6.283 7 C 0.049 3.951 8 C 0.444 3.556 9 O -0.518 6.518 10 N -0.428 5.428 11 C -0.349 4.349 12 H 0.101 0.899 13 C 0.090 3.910 14 N -0.863 5.863 15 Si 0.917 3.083 16 H -0.246 1.246 17 H -0.312 1.312 18 H -0.285 1.285 19 C 0.055 3.945 20 C -0.168 4.168 21 C -0.198 4.198 22 C -0.112 4.112 23 C -0.108 4.108 24 C -0.084 4.084 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.121 0.879 29 H 0.128 0.872 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.274 0.726 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.485 3.368 -0.217 19.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.132 4.132 3 C -0.104 4.104 4 C -0.225 4.225 5 C 0.084 3.916 6 O -0.194 6.194 7 C -0.030 4.030 8 C 0.234 3.766 9 O -0.399 6.399 10 N -0.150 5.150 11 C -0.475 4.475 12 H 0.118 0.882 13 C -0.120 4.120 14 N -0.498 5.498 15 Si 0.750 3.250 16 H -0.172 1.172 17 H -0.242 1.242 18 H -0.211 1.211 19 C -0.050 4.050 20 C -0.205 4.205 21 C -0.236 4.236 22 C -0.113 4.113 23 C -0.164 4.164 24 C -0.103 4.103 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.139 0.861 29 H 0.146 0.854 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.116 0.884 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -18.926 2.507 -0.214 19.092 hybrid contribution -0.429 0.164 0.746 0.876 sum -19.355 2.671 0.531 19.545 Atomic orbital electron populations 1.20676 0.91324 1.02351 1.01881 1.19738 0.95937 0.93037 1.04461 1.20744 0.93191 0.97497 0.98995 1.21267 0.95359 0.97110 1.08722 1.19011 0.82895 0.93740 0.95983 1.86203 1.15223 1.30384 1.87620 1.22611 0.93582 0.84611 1.02153 1.19692 0.86388 0.86247 0.84300 1.90564 1.75696 1.22978 1.50691 1.43000 1.05982 1.01261 1.64774 1.18791 0.78774 1.20830 1.29060 0.88170 1.25331 0.95022 0.94939 0.96687 1.69726 1.15526 1.26852 1.37656 0.86270 0.78804 0.81862 0.78095 1.17249 1.24237 1.21120 1.21872 0.98085 0.83367 1.01716 1.23124 1.00140 0.97316 0.99966 1.23295 1.03548 1.03544 0.93257 1.19288 0.93171 0.93724 1.05119 1.20635 1.00536 0.92805 1.02466 1.20716 0.92288 0.97671 0.99578 0.91685 0.91908 0.91883 0.86077 0.85397 0.90168 0.90434 0.91636 0.87243 0.86925 0.89273 0.89366 0.88422 0.91414 0.91958 0.90432 0.85670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.00 0.36 -0.50 16 2 C -0.13 -1.50 5.88 -104.60 -0.62 -2.11 16 3 C -0.09 -1.02 9.69 -39.61 -0.38 -1.40 16 4 C -0.21 -2.84 9.04 -39.43 -0.36 -3.20 16 5 C 0.13 2.14 6.66 -39.21 -0.26 1.88 16 6 O -0.28 -5.60 8.72 -39.31 -0.34 -5.95 16 7 C 0.05 0.92 3.85 36.01 0.14 1.06 16 8 C 0.44 10.78 5.95 -10.99 -0.07 10.71 16 9 O -0.52 -14.83 11.35 -14.36 -0.16 -14.99 16 10 N -0.43 -10.16 2.56 -107.73 -0.28 -10.44 16 11 C -0.35 -9.68 8.77 -14.94 -0.13 -9.81 16 12 H 0.10 2.86 6.96 -52.48 -0.37 2.50 16 13 C 0.09 2.65 4.91 -17.47 -0.09 2.56 16 14 N -0.86 -26.34 13.96 55.50 0.77 -25.56 16 15 Si 0.92 25.02 24.52 -169.99 -4.17 20.85 16 16 H -0.25 -7.14 6.10 56.52 0.34 -6.79 16 17 H -0.31 -8.33 7.11 56.52 0.40 -7.93 16 18 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 19 C 0.06 1.00 5.85 -67.93 -0.40 0.60 16 20 C -0.17 -2.75 9.80 -26.74 -0.26 -3.01 16 21 C -0.20 -3.22 10.37 -26.73 -0.28 -3.50 16 22 C -0.11 -1.67 5.89 -104.47 -0.62 -2.29 16 23 C -0.11 -1.53 9.79 36.00 0.35 -1.18 16 24 C -0.08 -1.04 9.35 -39.60 -0.37 -1.41 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 27 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 28 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 29 H 0.13 1.55 6.30 -52.49 -0.33 1.22 16 30 H 0.08 1.25 7.10 -51.93 -0.37 0.88 16 31 H 0.08 1.29 7.62 -51.93 -0.40 0.89 16 32 H 0.27 7.90 8.31 -40.82 -0.34 7.56 16 33 H 0.11 1.59 6.99 -51.93 -0.36 1.22 16 34 H 0.11 2.13 6.49 -51.93 -0.34 1.79 16 35 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.10 1.84 8.14 -51.93 -0.42 1.41 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 40 H 0.08 1.28 7.54 -51.93 -0.39 0.89 16 41 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 335.60 15.07 5.06 5.06 Total: -1.00 -34.13 335.60 -8.05 -42.18 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -5.96 Total: 0.45 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -2.97 Total: -11.59 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.50 Total: -36.00 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.51 Total: -20.94 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -4.17 Total: 20.85 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.13 -8.05 -42.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065895105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.191 kcal (2) G-P(sol) polarization free energy of solvation -34.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds