Wall clock time and date at job start Tue Mar 31 2020 06:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38282 * 119.94620 * 2 1 4 4 C 1.38126 * 120.05690 * 179.97438 * 3 2 1 5 5 C 1.38760 * 119.94348 * 0.04225 * 4 3 2 6 6 O 1.35892 * 120.05672 * 180.25399 * 5 4 3 7 7 C 1.42901 * 116.99906 * 359.72528 * 6 5 4 8 8 C 1.50699 * 109.47036 * 179.97438 * 7 6 5 9 9 O 1.21289 * 120.00118 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00182 * 179.97438 * 8 7 6 11 11 C 1.37093 * 120.00303 * 179.97438 * 10 8 7 12 12 H 1.08008 * 119.99988 * 140.09483 * 11 10 8 13 13 C 1.38948 * 120.00318 * 320.10219 * 11 10 8 14 14 N 1.31417 * 120.00285 * 162.05340 * 13 11 10 15 15 Si 1.86802 * 119.99682 * 342.05165 * 13 11 10 16 16 H 1.48497 * 109.46898 * 93.80906 * 15 13 11 17 17 H 1.48507 * 109.46915 * 213.80491 * 15 13 11 18 18 H 1.48500 * 109.47059 * 333.80539 * 15 13 11 19 19 C 1.46501 * 119.99785 * 0.02562 * 10 8 7 20 20 C 1.52997 * 117.49995 * 182.28205 * 19 10 8 21 21 C 1.52995 * 60.00245 * 252.51257 * 20 19 10 22 22 C 1.38717 * 119.88815 * 359.97438 * 5 4 3 23 23 C 1.50696 * 120.02836 * 180.02562 * 22 5 4 24 24 C 1.38170 * 119.94233 * 359.97438 * 22 5 4 25 25 H 1.09001 * 109.47006 * 269.97661 * 1 2 3 26 26 H 1.09000 * 109.47533 * 29.97497 * 1 2 3 27 27 H 1.09000 * 109.47649 * 149.97888 * 1 2 3 28 28 H 1.07991 * 119.97283 * 0.02562 * 3 2 1 29 29 H 1.07998 * 120.03043 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.47461 * 299.99671 * 7 6 5 31 31 H 1.08997 * 109.47510 * 60.00249 * 7 6 5 32 32 H 0.97001 * 119.99782 * 179.97438 * 14 13 11 33 33 H 1.08998 * 115.55122 * 327.99453 * 19 10 8 34 34 H 1.08997 * 117.50085 * 0.02562 * 20 19 10 35 35 H 1.09002 * 117.50039 * 145.01845 * 20 19 10 36 36 H 1.09001 * 117.49866 * 252.50537 * 21 20 19 37 37 H 1.08996 * 117.51831 * 107.48545 * 21 20 19 38 38 H 1.09000 * 109.47302 * 89.99558 * 23 22 5 39 39 H 1.08997 * 109.47027 * 210.00168 * 23 22 5 40 40 H 1.09000 * 109.46620 * 329.99562 * 23 22 5 41 41 H 1.07999 * 119.97127 * 179.97438 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1982 0.0000 4 6 3.5785 1.2009 0.0005 5 6 4.2734 -0.0002 0.0002 6 8 5.6323 -0.0002 0.0059 7 6 6.2811 1.2730 0.0060 8 6 7.7751 1.0755 0.0134 9 8 8.2387 -0.0453 0.0176 10 7 8.5962 2.1443 0.0142 11 6 9.9553 1.9646 0.0215 12 1 10.5877 2.6034 -0.5774 13 6 10.5193 0.9607 0.7990 14 7 11.7436 0.5499 0.5550 15 14 9.5373 0.1948 2.1914 16 1 8.8503 -1.0262 1.6993 17 1 10.4535 -0.1666 3.3029 18 1 8.5276 1.1685 2.6789 19 6 8.0363 3.4981 0.0086 20 6 9.0197 4.6690 -0.0442 21 6 8.2645 4.3621 1.2505 22 6 3.5786 -1.2008 -0.0002 23 6 4.3301 -2.5070 0.0000 24 6 2.1969 -1.1980 0.0004 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3634 -0.8898 -0.5141 28 1 1.6560 2.1327 0.0004 29 1 4.1172 2.1369 0.0010 30 1 5.9921 1.8282 -0.8863 31 1 5.9846 1.8319 0.8936 32 1 12.1374 -0.1507 1.0981 33 1 7.0883 3.6125 -0.5169 34 1 10.0831 4.4322 -0.0751 35 1 8.7187 5.5541 -0.6047 36 1 7.4667 5.0453 1.5419 37 1 8.8308 3.9232 2.0719 38 1 4.5110 -2.8220 1.0277 39 1 3.7401 -3.2657 -0.5141 40 1 5.2829 -2.3780 -0.5135 41 1 1.6555 -2.1325 -0.0003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065895105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:21 Heat of formation + Delta-G solvation = -27.917988 kcal Electronic energy + Delta-G solvation = -23101.424406 eV Core-core repulsion = 19754.369309 eV Total energy + Delta-G solvation = -3347.055097 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.57684 -40.71962 -38.69712 -37.96120 -34.99005 -34.18252 -33.54230 -32.48551 -30.23236 -28.13812 -27.13405 -26.28858 -23.75140 -23.15711 -22.78274 -21.64749 -21.17667 -19.30934 -18.85884 -18.05918 -17.57432 -17.04000 -16.88408 -16.05180 -15.71437 -15.66604 -15.30707 -15.00840 -14.98355 -14.70314 -14.54313 -14.10450 -14.00028 -13.86929 -13.48806 -13.33648 -12.99453 -12.85600 -12.70428 -12.44891 -12.23977 -12.21443 -12.06746 -11.77409 -11.75014 -11.62972 -11.26049 -10.79093 -10.48386 -9.76198 -9.50767 -8.93079 -8.48513 -6.23607 0.37631 0.45413 1.10552 1.24808 1.47669 1.75581 1.82571 2.37706 2.75951 2.80934 2.91949 3.17529 3.58740 3.81953 3.88968 3.94512 4.04747 4.06516 4.08112 4.16723 4.30269 4.36993 4.38512 4.55833 4.67331 4.72068 4.80594 4.88297 4.92922 4.93394 5.00943 5.17301 5.21252 5.33136 5.39009 5.44898 5.50472 5.61997 5.69207 5.75708 5.92220 6.40709 6.66179 6.78740 7.23061 7.72007 8.58165 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020406 B = 0.004832 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.805133 B = 5793.090069 C = 6765.748796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.126 4.126 3 C -0.087 4.087 4 C -0.207 4.207 5 C 0.090 3.910 6 O -0.321 6.321 7 C 0.062 3.938 8 C 0.434 3.566 9 O -0.574 6.574 10 N -0.442 5.442 11 C -0.338 4.338 12 H 0.082 0.918 13 C 0.044 3.956 14 N -0.907 5.907 15 Si 0.965 3.035 16 H -0.280 1.280 17 H -0.309 1.309 18 H -0.269 1.269 19 C 0.032 3.968 20 C -0.163 4.163 21 C -0.183 4.183 22 C -0.134 4.134 23 C -0.105 4.105 24 C -0.087 4.087 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.153 0.847 29 H 0.146 0.854 30 H 0.116 0.884 31 H 0.104 0.896 32 H 0.273 0.727 33 H 0.157 0.843 34 H 0.076 0.924 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.042 0.958 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.140 5.885 -0.140 24.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.126 4.126 3 C -0.105 4.105 4 C -0.226 4.226 5 C 0.046 3.954 6 O -0.234 6.234 7 C -0.016 4.016 8 C 0.225 3.775 9 O -0.459 6.459 10 N -0.163 5.163 11 C -0.465 4.465 12 H 0.099 0.901 13 C -0.160 4.160 14 N -0.545 5.545 15 Si 0.797 3.203 16 H -0.208 1.208 17 H -0.239 1.239 18 H -0.194 1.194 19 C -0.071 4.071 20 C -0.201 4.201 21 C -0.221 4.221 22 C -0.135 4.135 23 C -0.161 4.161 24 C -0.105 4.105 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.171 0.829 29 H 0.163 0.837 30 H 0.134 0.866 31 H 0.122 0.878 32 H 0.083 0.917 33 H 0.174 0.826 34 H 0.095 0.905 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.107 0.893 40 H 0.061 0.939 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -23.610 5.087 -0.125 24.152 hybrid contribution 0.857 -0.574 0.618 1.203 sum -22.753 4.513 0.494 23.201 Atomic orbital electron populations 1.20752 0.88688 1.03710 1.02975 1.20218 0.97853 0.92514 1.02056 1.21163 0.92553 0.99067 0.97731 1.21513 0.96359 0.96631 1.08049 1.19351 0.81564 0.95527 0.99002 1.86142 1.17482 1.30926 1.88870 1.22465 0.89058 0.85103 1.04958 1.20776 0.89169 0.85387 0.82138 1.90522 1.77280 1.25303 1.52828 1.43196 1.04627 1.03995 1.64490 1.18742 0.80953 1.19376 1.27391 0.90055 1.25895 0.95566 0.95932 0.98629 1.69800 1.16922 1.28433 1.39297 0.85486 0.77911 0.80247 0.76612 1.20799 1.23949 1.19428 1.22376 1.00180 0.80372 1.04219 1.23171 0.97988 0.98060 1.00851 1.23353 1.04091 1.02978 0.91680 1.19541 0.94448 0.93340 1.06174 1.20584 0.99417 0.94055 1.02087 1.21017 0.91188 0.99418 0.98879 0.90568 0.90404 0.90812 0.82915 0.83663 0.86594 0.87801 0.91745 0.82611 0.90548 0.84909 0.84552 0.91607 0.91829 0.89303 0.93898 0.83358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 10.01 71.23 0.71 -0.49 16 2 C -0.13 -2.37 5.88 -19.85 -0.12 -2.49 16 3 C -0.09 -1.69 9.69 22.25 0.22 -1.47 16 4 C -0.21 -5.03 9.04 22.37 0.20 -4.83 16 5 C 0.09 2.88 6.66 22.51 0.15 3.03 16 6 O -0.32 -12.75 8.72 -73.30 -0.64 -13.39 16 7 C 0.06 2.20 3.85 71.24 0.27 2.48 16 8 C 0.43 21.09 5.95 87.66 0.52 21.62 16 9 O -0.57 -34.20 11.35 15.98 0.18 -34.02 16 10 N -0.44 -20.81 2.56 -613.13 -1.57 -22.38 16 11 C -0.34 -19.29 8.77 84.04 0.74 -18.56 16 12 H 0.08 4.86 6.96 -2.91 -0.02 4.84 16 13 C 0.04 2.72 4.91 84.92 0.42 3.13 16 14 N -0.91 -58.14 13.96 21.66 0.30 -57.83 16 15 Si 0.96 53.95 24.52 68.60 1.68 55.64 16 16 H -0.28 -17.08 6.10 99.48 0.61 -16.47 16 17 H -0.31 -16.73 7.11 99.48 0.71 -16.03 16 18 H -0.27 -14.00 7.11 99.48 0.71 -13.29 16 19 C 0.03 1.06 5.85 44.99 0.26 1.32 16 20 C -0.16 -4.92 9.80 30.59 0.30 -4.62 16 21 C -0.18 -5.32 10.37 30.59 0.32 -5.00 16 22 C -0.13 -3.90 5.89 -19.77 -0.12 -4.01 16 23 C -0.10 -3.05 9.79 71.23 0.70 -2.35 16 24 C -0.09 -1.91 9.35 22.26 0.21 -1.70 16 25 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.08 0.70 8.08 -2.39 -0.02 0.68 16 27 H 0.07 0.72 8.08 -2.39 -0.02 0.70 16 28 H 0.15 1.95 8.06 -2.92 -0.02 1.92 16 29 H 0.15 2.87 6.30 -2.91 -0.02 2.85 16 30 H 0.12 3.19 7.10 -2.39 -0.02 3.18 16 31 H 0.10 3.10 7.62 -2.39 -0.02 3.08 16 32 H 0.27 16.64 8.31 -92.71 -0.77 15.87 16 33 H 0.16 3.66 6.99 -2.39 -0.02 3.64 16 34 H 0.08 2.89 6.49 -2.39 -0.02 2.88 16 35 H 0.13 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.14 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.09 1.99 8.09 -2.39 -0.02 1.97 16 40 H 0.04 1.52 7.54 -2.39 -0.02 1.50 16 41 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -81.45 335.60 5.67 -75.79 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.92 Total: 10.14 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: 4.78 Total: -13.95 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -1.27 Total: -80.21 kcal Atomic # 8 Polarization: -46.95 SS G_CDS: -0.46 Total: -47.41 kcal Atomic # 14 Polarization: 53.95 SS G_CDS: 1.68 Total: 55.64 kcal Total: -81.45 5.67 -75.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065895105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.871 kcal (2) G-P(sol) polarization free energy of solvation -81.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds