Wall clock time and date at job start Tue Mar 31 2020 06:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35908 * 117.00126 * 2 1 4 4 C 1.38750 * 120.04979 * 0.02562 * 3 2 1 5 5 C 1.38126 * 119.93921 * 179.97438 * 4 3 2 6 6 C 1.50707 * 119.96912 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.46957 * 90.00307 * 6 5 4 8 8 O 1.21283 * 119.99987 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99658 * 179.97438 * 7 6 5 10 10 C 1.37097 * 119.99873 * 179.97438 * 9 7 6 11 11 H 1.07997 * 119.99984 * 224.29029 * 10 9 7 12 12 C 1.38948 * 119.99891 * 44.28570 * 10 9 7 13 13 N 1.31410 * 119.99706 * 18.21761 * 12 10 9 14 14 Si 1.86801 * 119.99949 * 198.20722 * 12 10 9 15 15 H 1.48496 * 109.47026 * 90.00714 * 14 12 10 16 16 H 1.48501 * 109.47084 * 210.00081 * 14 12 10 17 17 H 1.48501 * 109.47377 * 330.00212 * 14 12 10 18 18 C 1.46499 * 120.00229 * 0.02562 * 9 7 6 19 19 C 1.52995 * 117.50052 * 183.22382 * 18 9 7 20 20 C 1.52994 * 60.00243 * 252.50611 * 19 18 9 21 21 C 1.38279 * 120.05875 * 0.02562 * 5 4 3 22 22 C 1.38249 * 120.11166 * 359.74817 * 21 5 4 23 23 C 1.38166 * 120.05357 * 0.50637 * 22 21 5 24 24 C 1.50702 * 120.03025 * 179.77183 * 23 22 21 25 25 H 1.08993 * 109.47339 * 60.00111 * 1 2 3 26 26 H 1.09001 * 109.46846 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47423 * 299.99994 * 1 2 3 28 28 H 1.08002 * 120.03379 * 359.96398 * 4 3 2 29 29 H 1.08998 * 109.46912 * 210.00062 * 6 5 4 30 30 H 1.09002 * 109.46908 * 329.99862 * 6 5 4 31 31 H 0.97000 * 119.99767 * 174.93726 * 13 12 10 32 32 H 1.09002 * 115.54765 * 328.92938 * 18 9 7 33 33 H 1.09001 * 117.50211 * 359.97438 * 19 18 9 34 34 H 1.09001 * 117.50116 * 145.01298 * 19 18 9 35 35 H 1.09000 * 117.50154 * 252.50702 * 20 19 18 36 36 H 1.09002 * 117.51662 * 107.47671 * 20 19 18 37 37 H 1.08002 * 119.94799 * 179.97438 * 21 5 4 38 38 H 1.08003 * 119.97399 * 180.25376 * 22 21 5 39 39 H 1.09001 * 109.46806 * 269.72566 * 24 23 22 40 40 H 1.08995 * 109.47388 * 149.71824 * 24 23 22 41 41 H 1.08996 * 109.46973 * 29.71790 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6047 0.0011 6 6 1.1018 4.8698 0.0022 7 6 0.8294 5.2906 1.4235 8 8 1.2578 4.6282 2.3447 9 7 0.1099 6.4030 1.6707 10 6 -0.1383 6.7856 2.9636 11 1 -1.1272 7.1118 3.2499 12 6 0.8825 6.7534 3.9058 13 7 2.1363 6.7106 3.5147 14 14 0.4724 6.7714 5.7281 15 1 0.3169 5.3770 6.2143 16 1 1.5695 7.4367 6.4758 17 1 -0.7949 7.5149 5.9431 18 6 -0.4080 7.2029 0.5580 19 6 -1.1524 8.4943 0.9026 20 6 -1.9268 7.2788 0.3892 21 6 3.3017 3.6758 0.0005 22 6 4.0559 2.5172 0.0047 23 6 3.4311 1.2849 -0.0011 24 6 4.2537 0.0222 -0.0017 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.2127 2.3203 0.0004 29 1 1.6512 5.6588 -0.5113 30 1 0.1570 4.6915 -0.5113 31 1 2.8505 6.7622 4.1692 32 1 0.1994 7.1979 -0.3472 33 1 -1.2573 8.7487 1.9573 34 1 -1.0348 9.3394 0.2243 35 1 -2.3186 7.3241 -0.6269 36 1 -2.5406 6.7333 1.1059 37 1 3.7921 4.6381 0.0005 38 1 5.1343 2.5753 0.0084 39 1 4.4516 -0.2819 -1.0296 40 1 3.7066 -0.7682 0.5121 41 1 5.1979 0.2035 0.5117 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065895115.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:55 Heat of formation + Delta-G solvation = -31.887793 kcal Electronic energy + Delta-G solvation = -23219.209243 eV Core-core repulsion = 19871.982002 eV Total energy + Delta-G solvation = -3347.227241 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.28549 -40.29486 -38.50104 -37.61721 -35.00515 -34.32380 -32.83888 -31.06217 -30.53395 -28.41417 -27.30429 -25.60104 -23.17278 -23.12921 -22.81096 -22.17312 -20.97656 -18.47124 -18.17122 -17.78405 -17.30853 -16.73254 -16.63056 -16.44921 -15.99233 -15.65780 -15.22711 -15.03368 -14.67501 -14.47438 -14.29611 -13.95343 -13.50212 -13.40194 -13.04389 -12.96824 -12.85857 -12.76665 -12.69362 -12.42972 -12.21771 -12.12837 -12.06088 -11.88669 -11.71168 -11.62786 -11.19908 -10.72748 -9.98157 -9.58213 -8.99909 -8.91113 -8.19069 -5.96729 0.40004 0.54395 1.33483 1.41940 1.46347 2.25546 2.39766 2.43402 2.74945 3.12966 3.22523 3.38983 3.75571 3.88698 4.09653 4.14253 4.19955 4.25930 4.32008 4.34908 4.36371 4.40795 4.54458 4.60566 4.70046 4.71331 4.75899 4.80221 4.87403 4.90956 4.96288 5.08898 5.28733 5.35295 5.40367 5.47514 5.51192 5.56623 5.74541 5.89833 6.21689 6.46904 7.05660 7.24140 7.72841 8.40434 8.89338 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015983 B = 0.005080 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.487416 B = 5510.584438 C = 6117.190925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.326 6.326 3 C 0.111 3.889 4 C -0.202 4.202 5 C -0.031 4.031 6 C -0.087 4.087 7 C 0.474 3.526 8 O -0.579 6.579 9 N -0.446 5.446 10 C -0.354 4.354 11 H 0.076 0.924 12 C 0.023 3.977 13 N -0.869 5.869 14 Si 0.965 3.035 15 H -0.295 1.295 16 H -0.281 1.281 17 H -0.253 1.253 18 C 0.043 3.957 19 C -0.172 4.172 20 C -0.180 4.180 21 C -0.154 4.154 22 C -0.087 4.087 23 C -0.139 4.139 24 C -0.094 4.094 25 H 0.065 0.935 26 H 0.127 0.873 27 H 0.044 0.956 28 H 0.130 0.870 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.258 0.742 32 H 0.127 0.873 33 H 0.079 0.921 34 H 0.117 0.883 35 H 0.126 0.874 36 H 0.073 0.927 37 H 0.116 0.884 38 H 0.150 0.850 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.146 -7.111 -12.003 14.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.240 6.240 3 C 0.066 3.934 4 C -0.220 4.220 5 C -0.032 4.032 6 C -0.127 4.127 7 C 0.263 3.737 8 O -0.460 6.460 9 N -0.167 5.167 10 C -0.482 4.482 11 H 0.093 0.907 12 C -0.183 4.183 13 N -0.504 5.504 14 Si 0.790 3.210 15 H -0.222 1.222 16 H -0.206 1.206 17 H -0.177 1.177 18 C -0.062 4.062 19 C -0.209 4.209 20 C -0.218 4.218 21 C -0.173 4.173 22 C -0.104 4.104 23 C -0.140 4.140 24 C -0.151 4.151 25 H 0.084 0.916 26 H 0.145 0.855 27 H 0.062 0.938 28 H 0.148 0.852 29 H 0.117 0.883 30 H 0.127 0.873 31 H 0.067 0.933 32 H 0.145 0.855 33 H 0.097 0.903 34 H 0.135 0.865 35 H 0.144 0.856 36 H 0.091 0.909 37 H 0.134 0.866 38 H 0.168 0.832 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.667 -7.696 -11.457 13.902 hybrid contribution -0.298 0.546 1.356 1.492 sum -1.966 -7.149 -10.101 12.530 Atomic orbital electron populations 1.23272 0.77115 1.05451 1.01561 1.85982 1.22794 1.26265 1.88923 1.18913 0.92335 0.84208 0.97906 1.21121 1.00178 0.91884 1.08852 1.19336 0.94041 0.93761 0.96038 1.20622 1.01215 0.95776 0.95043 1.20526 0.81723 0.81025 0.90453 1.90509 1.52512 1.55015 1.47966 1.43003 1.49380 1.20052 1.04280 1.19044 0.95308 1.48404 0.85433 0.90685 1.25994 0.94542 0.94501 1.03263 1.69928 0.99665 1.45401 1.35399 0.85396 0.78581 0.77389 0.79607 1.22168 1.20634 1.17695 1.22042 0.93597 0.97973 0.92554 1.23100 1.03733 0.91980 1.02098 1.23321 0.94129 1.01584 1.02797 1.21043 0.93497 0.99018 1.03693 1.21066 1.00653 0.90553 0.98169 1.19569 0.90783 0.97204 1.06424 1.20568 0.98594 0.92999 1.02928 0.91628 0.85500 0.93775 0.85218 0.88251 0.87321 0.93333 0.85540 0.90253 0.86479 0.85638 0.90880 0.86602 0.83242 0.90133 0.91896 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.81 113.37 1.11 1.57 16 2 O -0.33 -9.66 9.54 -92.51 -0.88 -10.54 16 3 C 0.11 3.78 6.66 22.51 0.15 3.93 16 4 C -0.20 -7.28 8.69 22.37 0.19 -7.09 16 5 C -0.03 -1.21 4.37 -19.88 -0.09 -1.30 16 6 C -0.09 -3.33 4.45 29.10 0.13 -3.20 16 7 C 0.47 24.30 6.96 87.66 0.61 24.91 16 8 O -0.58 -35.60 13.79 -3.04 -0.04 -35.64 16 9 N -0.45 -22.30 2.83 -613.15 -1.74 -24.04 16 10 C -0.35 -19.67 7.92 84.04 0.67 -19.01 16 11 H 0.08 4.05 7.26 -2.91 -0.02 4.03 16 12 C 0.02 1.35 4.38 84.93 0.37 1.72 16 13 N -0.87 -53.46 11.74 21.66 0.25 -53.20 16 14 Si 0.96 46.63 29.59 68.60 2.03 48.66 16 15 H -0.29 -14.91 7.11 99.48 0.71 -14.21 16 16 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 17 H -0.25 -11.20 7.11 99.48 0.71 -10.49 16 18 C 0.04 1.63 5.87 44.99 0.26 1.90 16 19 C -0.17 -5.77 9.80 30.59 0.30 -5.47 16 20 C -0.18 -5.51 10.36 30.59 0.32 -5.19 16 21 C -0.15 -5.77 9.70 22.28 0.22 -5.55 16 22 C -0.09 -2.80 9.70 22.26 0.22 -2.59 16 23 C -0.14 -4.42 5.89 -19.77 -0.12 -4.54 16 24 C -0.09 -2.28 9.79 71.24 0.70 -1.58 16 25 H 0.07 1.28 7.66 -2.39 -0.02 1.27 16 26 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.04 1.09 7.66 -2.39 -0.02 1.07 16 28 H 0.13 4.29 6.30 -2.91 -0.02 4.27 16 29 H 0.10 3.46 7.51 -2.39 -0.02 3.44 16 30 H 0.11 3.50 8.05 -2.39 -0.02 3.48 16 31 H 0.26 15.37 8.32 -92.71 -0.77 14.60 16 32 H 0.13 4.08 6.96 -2.39 -0.02 4.07 16 33 H 0.08 3.12 6.72 -2.39 -0.02 3.11 16 34 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 35 H 0.13 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.12 4.30 8.06 -2.91 -0.02 4.27 16 38 H 0.15 3.87 8.06 -2.91 -0.02 3.84 16 39 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.06 1.55 7.53 -2.39 -0.02 1.53 16 41 H 0.08 1.59 8.08 -2.39 -0.02 1.57 16 Total: -1.00 -76.53 342.05 5.69 -70.85 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 1.02 Total: 25.40 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: 5.04 Total: -21.48 kcal Atomic # 7 Polarization: -75.76 SS G_CDS: -1.48 Total: -77.24 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -0.92 Total: -46.18 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -76.53 5.69 -70.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065895115.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.961 kcal (2) G-P(sol) polarization free energy of solvation -76.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds