Wall clock time and date at job start Tue Mar 31 2020 06:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38262 * 119.97085 * 2 1 4 4 C 1.38265 * 120.11083 * 179.97438 * 3 2 1 5 5 C 1.50706 * 119.97535 * 180.02562 * 4 3 2 6 6 C 1.38149 * 120.05651 * 359.97438 * 4 3 2 7 7 C 1.38733 * 119.93886 * 359.97438 * 6 4 3 8 8 O 1.35902 * 120.04995 * 180.02562 * 7 6 4 9 9 C 1.42902 * 116.99752 * 179.97438 * 8 7 6 10 10 C 1.50709 * 109.46702 * 180.02562 * 9 8 7 11 11 O 1.21289 * 120.00188 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99403 * 179.73057 * 10 9 8 13 13 C 1.37099 * 119.99783 * 180.02562 * 12 10 9 14 14 H 1.07995 * 119.99775 * 224.56973 * 13 12 10 15 15 C 1.38949 * 119.99934 * 44.56720 * 13 12 10 16 16 N 1.31421 * 119.99950 * 18.03972 * 15 13 12 17 17 Si 1.86797 * 120.00185 * 198.03120 * 15 13 12 18 18 H 1.48500 * 109.46769 * 59.99984 * 17 15 13 19 19 H 1.48493 * 109.47592 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47229 * 300.00379 * 17 15 13 21 21 C 1.46503 * 120.00221 * 359.97438 * 12 10 9 22 22 C 1.52997 * 117.49931 * 183.27314 * 21 12 10 23 23 C 1.53003 * 117.49273 * 114.61697 * 21 12 10 24 24 C 1.38142 * 119.96998 * 180.23004 * 2 1 3 25 25 H 1.09002 * 109.47148 * 89.99943 * 1 2 3 26 26 H 1.09001 * 109.47277 * 209.99879 * 1 2 3 27 27 H 1.09000 * 109.47322 * 329.99970 * 1 2 3 28 28 H 1.07996 * 119.94715 * 359.97438 * 3 2 1 29 29 H 1.09003 * 109.46479 * 269.97885 * 5 4 3 30 30 H 1.08997 * 109.46567 * 29.97146 * 5 4 3 31 31 H 1.08993 * 109.47431 * 149.97646 * 5 4 3 32 32 H 1.07998 * 120.02588 * 179.97438 * 6 4 3 33 33 H 1.08997 * 109.46956 * 60.00343 * 9 8 7 34 34 H 1.08994 * 109.47393 * 300.00250 * 9 8 7 35 35 H 0.97001 * 119.99960 * 174.95771 * 16 15 13 36 36 H 1.09001 * 115.54915 * 328.95047 * 21 12 10 37 37 H 1.09008 * 117.49942 * 0.02562 * 22 21 12 38 38 H 1.09000 * 117.50075 * 145.02052 * 22 21 12 39 39 H 1.09010 * 117.49594 * 214.98094 * 23 21 12 40 40 H 1.08999 * 117.50376 * 359.97438 * 23 21 12 41 41 H 1.08002 * 120.03323 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1977 0.0000 4 6 3.5803 1.2011 0.0005 5 6 4.3301 2.5084 0.0011 6 6 4.2752 0.0071 0.0016 7 6 3.5844 -1.1960 0.0027 8 8 4.2656 -2.3720 0.0043 9 6 3.4891 -3.5716 0.0059 10 6 4.4089 -4.7653 0.0081 11 8 5.6111 -4.6046 0.0078 12 7 3.8956 -6.0115 0.0154 13 6 4.7323 -7.0975 0.0180 14 1 4.5321 -7.9349 -0.6340 15 6 5.8379 -7.1208 0.8593 16 7 5.9000 -6.3021 1.8855 17 14 7.2358 -8.3158 0.5319 18 1 7.8119 -8.0478 -0.8103 19 1 8.2874 -8.1428 1.5660 20 1 6.7191 -9.7072 0.5799 21 6 2.4434 -6.2055 0.0217 22 6 1.9230 -7.6417 0.1073 23 6 1.8136 -6.8648 -1.2070 24 6 2.1971 -1.1967 -0.0048 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6564 2.1322 -0.0004 29 1 4.5115 2.8235 -1.0265 30 1 3.7384 3.2663 0.5145 31 1 5.2825 2.3809 0.5156 32 1 5.3552 0.0103 0.0016 33 1 2.8603 -3.5985 -0.8841 34 1 2.8603 -3.5962 0.8958 35 1 6.6357 -6.3676 2.5143 36 1 1.8678 -5.4306 0.5278 37 1 2.6610 -8.4423 0.1593 38 1 1.0047 -7.8117 0.6694 39 1 0.8233 -6.5237 -1.5091 40 1 2.4795 -7.1537 -2.0202 41 1 1.6571 -2.1320 -0.0090 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065895382.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:39 Heat of formation + Delta-G solvation = -13.787468 kcal Electronic energy + Delta-G solvation = -22767.936636 eV Core-core repulsion = 19421.494285 eV Total energy + Delta-G solvation = -3346.442352 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.04398 -38.64116 -37.36170 -35.91951 -33.51624 -32.84182 -31.15840 -30.76366 -28.16159 -27.19561 -26.53169 -24.55233 -21.82790 -21.58690 -21.32793 -20.70504 -19.30997 -17.38244 -16.59898 -16.15359 -15.82816 -15.68703 -15.43294 -14.65213 -14.31414 -13.96824 -13.82386 -13.58306 -13.26733 -13.24373 -12.95469 -12.88299 -12.59957 -12.45681 -11.90757 -11.68579 -11.52742 -11.36363 -11.11827 -10.96064 -10.87556 -10.73306 -10.65352 -10.35550 -10.19307 -10.03425 -9.81630 -8.73962 -8.53277 -8.06956 -7.91581 -7.09834 -6.14487 -3.92328 1.41786 1.61051 3.27624 3.37263 3.39264 3.44994 3.83900 4.00651 4.27834 4.68474 4.76520 4.79195 4.87995 5.14880 5.22601 5.26595 5.32801 5.40964 5.44347 5.50813 5.51522 5.57617 5.61565 5.66189 5.68456 5.74476 5.78278 5.81007 5.94742 6.03577 6.16598 6.23187 6.36897 6.50644 6.60763 6.66332 6.69676 6.87757 6.95381 7.57514 7.76061 8.23215 8.97993 9.09880 9.57683 10.19446 10.94499 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019439 B = 0.004289 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.092401 B = 6527.399034 C = 7725.829408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.046 4.046 3 C -0.170 4.170 4 C -0.047 4.047 5 C -0.112 4.112 6 C -0.162 4.162 7 C 0.149 3.851 8 O -0.283 6.283 9 C 0.049 3.951 10 C 0.483 3.517 11 O -0.510 6.510 12 N -0.423 5.423 13 C -0.351 4.351 14 H 0.080 0.920 15 C 0.073 3.927 16 N -0.831 5.831 17 Si 0.916 3.084 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.068 3.932 22 C -0.170 4.170 23 C -0.207 4.207 24 C -0.220 4.220 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.118 0.882 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.129 0.871 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.267 0.733 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.138 11.285 -2.982 16.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.046 4.046 3 C -0.188 4.188 4 C -0.047 4.047 5 C -0.169 4.169 6 C -0.180 4.180 7 C 0.102 3.898 8 O -0.195 6.195 9 C -0.030 4.030 10 C 0.269 3.731 11 O -0.385 6.385 12 N -0.146 5.146 13 C -0.477 4.477 14 H 0.098 0.902 15 C -0.138 4.138 16 N -0.464 5.464 17 Si 0.743 3.257 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.203 1.203 21 C -0.038 4.038 22 C -0.207 4.207 23 C -0.246 4.246 24 C -0.239 4.239 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.136 0.864 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.147 0.853 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.118 0.882 37 H 0.127 0.873 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.111 0.889 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.105 11.448 -2.832 15.530 hybrid contribution 0.255 -0.732 0.047 0.776 sum -9.850 10.717 -2.784 14.820 Atomic orbital electron populations 1.20794 0.91263 1.02695 1.02278 1.19630 0.95730 0.92493 0.96737 1.20689 0.93359 0.97237 1.07555 1.19622 0.93583 0.94419 0.97089 1.20780 1.00019 0.93752 1.02336 1.20293 1.00388 0.89260 1.08094 1.19169 0.90494 0.86623 0.93551 1.86235 1.34599 1.11442 1.87187 1.22723 0.94738 0.84068 1.01436 1.19303 0.88425 0.82780 0.82585 1.90570 1.14942 1.84057 1.48964 1.42592 1.01284 1.04190 1.66507 1.18804 1.07026 0.98164 1.23706 0.90234 1.25291 0.98827 0.96076 0.93610 1.69816 1.30917 1.35343 1.10344 0.86223 0.81310 0.79675 0.78522 1.19833 1.21102 1.20291 1.21754 0.85604 0.96307 1.00173 1.23069 1.02016 0.96283 0.99346 1.23347 1.01349 1.06798 0.93086 1.21147 0.93086 0.98878 1.10776 0.91124 0.91498 0.91577 0.86391 0.91087 0.91556 0.91345 0.85258 0.90821 0.90942 0.92335 0.88203 0.87319 0.89692 0.89699 0.88942 0.85517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.01 36.01 0.36 -0.72 16 2 C -0.05 -0.59 5.88 -104.65 -0.62 -1.21 16 3 C -0.17 -2.10 9.35 -39.56 -0.37 -2.47 16 4 C -0.05 -0.62 5.88 -104.64 -0.62 -1.23 16 5 C -0.11 -1.09 10.01 36.01 0.36 -0.73 16 6 C -0.16 -2.59 9.64 -39.43 -0.38 -2.97 16 7 C 0.15 2.65 6.69 -39.22 -0.26 2.39 16 8 O -0.28 -6.13 9.67 -39.34 -0.38 -6.51 16 9 C 0.05 1.01 3.85 36.01 0.14 1.15 16 10 C 0.48 12.65 7.05 -10.98 -0.08 12.57 16 11 O -0.51 -15.73 14.27 -14.36 -0.20 -15.94 16 12 N -0.42 -10.57 2.83 -107.72 -0.31 -10.88 16 13 C -0.35 -9.53 7.91 -14.93 -0.12 -9.65 16 14 H 0.08 2.07 7.27 -52.49 -0.38 1.69 16 15 C 0.07 2.07 4.39 -17.46 -0.08 1.99 16 16 N -0.83 -24.92 11.75 55.50 0.65 -24.27 16 17 Si 0.92 22.00 29.59 -169.99 -5.03 16.97 16 18 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 C 0.07 1.32 5.88 -67.93 -0.40 0.92 16 22 C -0.17 -2.96 9.80 -26.70 -0.26 -3.22 16 23 C -0.21 -3.40 10.36 -26.69 -0.28 -3.67 16 24 C -0.22 -3.34 8.69 -39.43 -0.34 -3.68 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 27 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 28 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 31 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 32 H 0.13 2.03 8.06 -52.49 -0.42 1.60 16 33 H 0.07 1.30 7.62 -51.93 -0.40 0.90 16 34 H 0.07 1.36 7.09 -51.93 -0.37 0.99 16 35 H 0.27 7.67 8.32 -40.82 -0.34 7.33 16 36 H 0.10 1.71 6.95 -51.93 -0.36 1.35 16 37 H 0.11 2.11 6.73 -51.92 -0.35 1.76 16 38 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.08 1.14 8.14 -51.92 -0.42 0.72 16 40 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 41 H 0.13 1.76 6.30 -52.49 -0.33 1.43 16 LS Contribution 344.24 15.07 5.19 5.19 Total: -1.00 -34.04 344.24 -8.98 -43.02 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -5.96 Total: 2.97 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -2.94 Total: -10.54 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.35 Total: -35.15 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.59 Total: -22.45 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.04 -8.98 -43.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065895382.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.228 kcal (2) G-P(sol) polarization free energy of solvation -34.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds