Wall clock time and date at job start Tue Mar 31 2020 06:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38262 * 119.97085 * 2 1 4 4 C 1.38265 * 120.11083 * 179.97438 * 3 2 1 5 5 C 1.50706 * 119.97535 * 180.02562 * 4 3 2 6 6 C 1.38149 * 120.05651 * 359.97438 * 4 3 2 7 7 C 1.38733 * 119.93886 * 359.97438 * 6 4 3 8 8 O 1.35902 * 120.04995 * 180.02562 * 7 6 4 9 9 C 1.42902 * 116.99752 * 179.97438 * 8 7 6 10 10 C 1.50709 * 109.46702 * 180.02562 * 9 8 7 11 11 O 1.21289 * 120.00188 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99403 * 179.73057 * 10 9 8 13 13 C 1.37099 * 119.99783 * 180.02562 * 12 10 9 14 14 H 1.07995 * 119.99775 * 224.56973 * 13 12 10 15 15 C 1.38949 * 119.99934 * 44.56720 * 13 12 10 16 16 N 1.31421 * 119.99950 * 18.03972 * 15 13 12 17 17 Si 1.86797 * 120.00185 * 198.03120 * 15 13 12 18 18 H 1.48500 * 109.46769 * 59.99984 * 17 15 13 19 19 H 1.48493 * 109.47592 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47229 * 300.00379 * 17 15 13 21 21 C 1.46503 * 120.00221 * 359.97438 * 12 10 9 22 22 C 1.52997 * 117.49931 * 183.27314 * 21 12 10 23 23 C 1.53003 * 117.49273 * 114.61697 * 21 12 10 24 24 C 1.38142 * 119.96998 * 180.23004 * 2 1 3 25 25 H 1.09002 * 109.47148 * 89.99943 * 1 2 3 26 26 H 1.09001 * 109.47277 * 209.99879 * 1 2 3 27 27 H 1.09000 * 109.47322 * 329.99970 * 1 2 3 28 28 H 1.07996 * 119.94715 * 359.97438 * 3 2 1 29 29 H 1.09003 * 109.46479 * 269.97885 * 5 4 3 30 30 H 1.08997 * 109.46567 * 29.97146 * 5 4 3 31 31 H 1.08993 * 109.47431 * 149.97646 * 5 4 3 32 32 H 1.07998 * 120.02588 * 179.97438 * 6 4 3 33 33 H 1.08997 * 109.46956 * 60.00343 * 9 8 7 34 34 H 1.08994 * 109.47393 * 300.00250 * 9 8 7 35 35 H 0.97001 * 119.99960 * 174.95771 * 16 15 13 36 36 H 1.09001 * 115.54915 * 328.95047 * 21 12 10 37 37 H 1.09008 * 117.49942 * 0.02562 * 22 21 12 38 38 H 1.09000 * 117.50075 * 145.02052 * 22 21 12 39 39 H 1.09010 * 117.49594 * 214.98094 * 23 21 12 40 40 H 1.08999 * 117.50376 * 359.97438 * 23 21 12 41 41 H 1.08002 * 120.03323 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1977 0.0000 4 6 3.5803 1.2011 0.0005 5 6 4.3301 2.5084 0.0011 6 6 4.2752 0.0071 0.0016 7 6 3.5844 -1.1960 0.0027 8 8 4.2656 -2.3720 0.0043 9 6 3.4891 -3.5716 0.0059 10 6 4.4089 -4.7653 0.0081 11 8 5.6111 -4.6046 0.0078 12 7 3.8956 -6.0115 0.0154 13 6 4.7323 -7.0975 0.0180 14 1 4.5321 -7.9349 -0.6340 15 6 5.8379 -7.1208 0.8593 16 7 5.9000 -6.3021 1.8855 17 14 7.2358 -8.3158 0.5319 18 1 7.8119 -8.0478 -0.8103 19 1 8.2874 -8.1428 1.5660 20 1 6.7191 -9.7072 0.5799 21 6 2.4434 -6.2055 0.0217 22 6 1.9230 -7.6417 0.1073 23 6 1.8136 -6.8648 -1.2070 24 6 2.1971 -1.1967 -0.0048 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6564 2.1322 -0.0004 29 1 4.5115 2.8235 -1.0265 30 1 3.7384 3.2663 0.5145 31 1 5.2825 2.3809 0.5156 32 1 5.3552 0.0103 0.0016 33 1 2.8603 -3.5985 -0.8841 34 1 2.8603 -3.5962 0.8958 35 1 6.6357 -6.3676 2.5143 36 1 1.8678 -5.4306 0.5278 37 1 2.6610 -8.4423 0.1593 38 1 1.0047 -7.8117 0.6694 39 1 0.8233 -6.5237 -1.5091 40 1 2.4795 -7.1537 -2.0202 41 1 1.6571 -2.1320 -0.0090 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065895382.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:39 Heat of formation + Delta-G solvation = -33.378436 kcal Electronic energy + Delta-G solvation = -22768.786164 eV Core-core repulsion = 19421.494285 eV Total energy + Delta-G solvation = -3347.291880 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.36188 -40.31454 -38.71898 -37.64319 -34.82776 -34.45061 -33.02829 -31.99659 -29.75073 -28.06312 -27.66387 -26.42577 -23.27396 -22.92047 -22.76085 -21.89874 -20.99737 -18.84430 -18.23881 -17.92948 -17.23187 -16.97676 -16.81635 -16.53426 -15.90842 -15.49127 -15.04747 -14.80913 -14.67742 -14.47248 -14.11120 -13.96737 -13.88255 -13.52607 -13.29312 -13.10274 -12.88268 -12.80730 -12.62074 -12.60007 -12.32659 -12.23166 -12.13923 -11.79360 -11.71003 -11.61630 -11.25976 -10.76380 -10.05795 -9.57977 -9.11536 -9.06129 -8.25593 -6.06068 0.34717 0.48458 1.33549 1.43790 1.47062 1.92403 2.15013 2.37785 2.75514 3.08559 3.14803 3.29413 3.73138 3.86545 3.92912 3.99414 4.11654 4.18110 4.19509 4.25623 4.33908 4.42411 4.45582 4.48688 4.69629 4.83059 4.85537 4.89005 4.89873 4.97155 5.01863 5.13035 5.25681 5.34144 5.39413 5.43361 5.48614 5.56951 5.66903 5.91425 6.13812 6.46206 6.94407 7.12464 7.57084 8.22524 8.83161 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019439 B = 0.004289 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.092401 B = 6527.399034 C = 7725.829408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.045 4.045 3 C -0.165 4.165 4 C -0.046 4.046 5 C -0.111 4.111 6 C -0.189 4.189 7 C 0.111 3.889 8 O -0.325 6.325 9 C 0.069 3.931 10 C 0.462 3.538 11 O -0.576 6.576 12 N -0.434 5.434 13 C -0.358 4.358 14 H 0.085 0.915 15 C 0.019 3.981 16 N -0.873 5.873 17 Si 0.973 3.027 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.250 1.250 21 C 0.033 3.967 22 C -0.165 4.165 23 C -0.177 4.177 24 C -0.228 4.228 25 H 0.085 0.915 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.153 0.847 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.115 0.885 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.261 0.739 36 H 0.127 0.873 37 H 0.082 0.918 38 H 0.120 0.880 39 H 0.129 0.871 40 H 0.075 0.925 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.634 12.437 -3.686 19.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.045 4.045 3 C -0.183 4.183 4 C -0.046 4.046 5 C -0.168 4.168 6 C -0.207 4.207 7 C 0.066 3.934 8 O -0.238 6.238 9 C -0.010 4.010 10 C 0.250 3.750 11 O -0.457 6.457 12 N -0.156 5.156 13 C -0.485 4.485 14 H 0.103 0.897 15 C -0.187 4.187 16 N -0.508 5.508 17 Si 0.798 3.202 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.174 1.174 21 C -0.072 4.072 22 C -0.203 4.203 23 C -0.215 4.215 24 C -0.247 4.247 25 H 0.103 0.897 26 H 0.090 0.910 27 H 0.104 0.896 28 H 0.171 0.829 29 H 0.102 0.898 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.133 0.867 33 H 0.121 0.879 34 H 0.106 0.894 35 H 0.070 0.930 36 H 0.145 0.855 37 H 0.101 0.899 38 H 0.138 0.862 39 H 0.147 0.853 40 H 0.094 0.906 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.671 12.571 -3.549 18.908 hybrid contribution 1.221 -0.997 0.199 1.589 sum -12.450 11.574 -3.350 17.325 Atomic orbital electron populations 1.20875 0.88363 1.04013 1.03561 1.20107 0.97796 0.91735 0.94907 1.21163 0.93036 0.98593 1.05516 1.20027 0.94463 0.94565 0.95542 1.20861 0.99953 0.92449 1.03495 1.20477 1.00153 0.90235 1.09868 1.19517 0.91951 0.85558 0.96360 1.86159 1.36413 1.12727 1.88488 1.22434 0.93143 0.82019 1.03372 1.20290 0.88604 0.84593 0.81490 1.90510 1.17806 1.85372 1.51962 1.42825 1.03762 1.03520 1.65476 1.19127 1.07739 0.98650 1.23028 0.89715 1.26161 1.01148 0.97889 0.93504 1.69941 1.31480 1.37726 1.11639 0.85326 0.78350 0.79076 0.77469 1.20743 1.21377 1.17420 1.22133 0.82606 0.98670 1.03789 1.23137 1.02520 0.94002 1.00611 1.23371 1.02459 1.04214 0.91480 1.21325 0.91883 1.00495 1.10972 0.89670 0.90972 0.89570 0.82901 0.89761 0.89143 0.91589 0.86669 0.87926 0.89369 0.93040 0.85550 0.89926 0.86157 0.85318 0.90625 0.84536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.65 10.01 71.24 0.71 -0.94 16 2 C -0.05 -1.04 5.88 -19.88 -0.12 -1.16 16 3 C -0.17 -3.56 9.35 22.28 0.21 -3.36 16 4 C -0.05 -1.14 5.88 -19.88 -0.12 -1.26 16 5 C -0.11 -1.93 10.01 71.24 0.71 -1.21 16 6 C -0.19 -6.25 9.64 22.37 0.22 -6.03 16 7 C 0.11 4.09 6.69 22.51 0.15 4.24 16 8 O -0.32 -14.80 9.67 -73.41 -0.71 -15.51 16 9 C 0.07 2.87 3.85 71.24 0.27 3.14 16 10 C 0.46 25.15 7.05 87.66 0.62 25.77 16 11 O -0.58 -37.75 14.27 15.98 0.23 -37.52 16 12 N -0.43 -22.11 2.83 -613.12 -1.74 -23.85 16 13 C -0.36 -20.00 7.91 84.04 0.66 -19.33 16 14 H 0.09 4.49 7.27 -2.91 -0.02 4.47 16 15 C 0.02 1.13 4.39 84.92 0.37 1.50 16 16 N -0.87 -54.87 11.75 21.66 0.25 -54.62 16 17 Si 0.97 46.59 29.59 68.60 2.03 48.62 16 18 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 19 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 20 H -0.25 -10.75 7.11 99.48 0.71 -10.04 16 21 C 0.03 1.22 5.88 44.99 0.26 1.48 16 22 C -0.17 -5.39 9.80 30.62 0.30 -5.09 16 23 C -0.18 -5.29 10.36 30.62 0.32 -4.97 16 24 C -0.23 -6.66 8.69 22.36 0.19 -6.47 16 25 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.07 1.02 8.09 -2.39 -0.02 1.00 16 27 H 0.09 0.96 8.08 -2.39 -0.02 0.94 16 28 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.09 1.14 8.08 -2.39 -0.02 1.12 16 31 H 0.07 1.18 8.08 -2.39 -0.02 1.16 16 32 H 0.12 3.95 8.06 -2.91 -0.02 3.93 16 33 H 0.10 3.56 7.62 -2.39 -0.02 3.54 16 34 H 0.09 3.30 7.09 -2.39 -0.02 3.29 16 35 H 0.26 15.82 8.32 -92.71 -0.77 15.05 16 36 H 0.13 4.01 6.95 -2.39 -0.02 3.99 16 37 H 0.08 3.15 6.73 -2.38 -0.02 3.14 16 38 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 39 H 0.13 2.78 8.14 -2.38 -0.02 2.76 16 40 H 0.08 2.54 8.14 -2.39 -0.02 2.53 16 41 H 0.14 3.55 6.30 -2.91 -0.02 3.54 16 Total: -1.00 -80.54 344.24 5.86 -74.68 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 1.02 Total: 21.90 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: 4.77 Total: -13.70 kcal Atomic # 7 Polarization: -76.98 SS G_CDS: -1.48 Total: -78.46 kcal Atomic # 8 Polarization: -52.56 SS G_CDS: -0.48 Total: -53.04 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -80.54 5.86 -74.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065895382.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.297 kcal (2) G-P(sol) polarization free energy of solvation -80.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds