Wall clock time and date at job start Tue Mar 31 2020 06:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38286 * 119.94660 * 2 1 4 4 C 1.38124 * 120.05711 * 180.25493 * 3 2 1 5 5 C 1.38747 * 119.94382 * 359.48901 * 4 3 2 6 6 O 1.35900 * 120.05679 * 180.27783 * 5 4 3 7 7 C 1.42897 * 116.99912 * 0.02562 * 6 5 4 8 8 C 1.50708 * 109.46962 * 180.02562 * 7 6 5 9 9 O 1.21292 * 119.99741 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99611 * 179.97438 * 8 7 6 11 11 C 1.37099 * 119.99585 * 179.97438 * 10 8 7 12 12 H 1.08000 * 119.99844 * 140.10311 * 11 10 8 13 13 C 1.38950 * 120.00122 * 320.09817 * 11 10 8 14 14 N 1.31413 * 120.00223 * 162.05121 * 13 11 10 15 15 Si 1.86805 * 119.99976 * 342.05010 * 13 11 10 16 16 H 1.48508 * 109.46812 * 93.80559 * 15 13 11 17 17 H 1.48499 * 109.47171 * 213.80217 * 15 13 11 18 18 H 1.48499 * 109.47280 * 333.80522 * 15 13 11 19 19 C 1.46498 * 120.00257 * 0.02562 * 10 8 7 20 20 C 1.52997 * 117.49786 * 182.28135 * 19 10 8 21 21 C 1.52994 * 60.00336 * 252.50822 * 20 19 10 22 22 C 1.38717 * 119.88866 * 0.25577 * 5 4 3 23 23 C 1.38170 * 119.94362 * 0.02562 * 22 5 4 24 24 C 1.50691 * 119.96997 * 180.02562 * 23 22 5 25 25 H 1.09000 * 109.47163 * 270.25606 * 1 2 3 26 26 H 1.09002 * 109.46836 * 30.25224 * 1 2 3 27 27 H 1.08996 * 109.47267 * 150.24883 * 1 2 3 28 28 H 1.08000 * 119.97410 * 0.02562 * 3 2 1 29 29 H 1.08004 * 120.02900 * 179.77370 * 4 3 2 30 30 H 1.09004 * 109.46810 * 299.99427 * 7 6 5 31 31 H 1.08995 * 109.47332 * 60.00098 * 7 6 5 32 32 H 0.97002 * 120.00163 * 180.02562 * 14 13 11 33 33 H 1.08996 * 115.54910 * 327.99119 * 19 10 8 34 34 H 1.09002 * 117.49889 * 0.02562 * 20 19 10 35 35 H 1.09001 * 117.49787 * 145.01985 * 20 19 10 36 36 H 1.08994 * 117.50240 * 252.51069 * 21 20 19 37 37 H 1.09000 * 117.51650 * 107.47767 * 21 20 19 38 38 H 1.08002 * 120.02817 * 180.02562 * 22 5 4 39 39 H 1.09002 * 109.47619 * 89.99932 * 24 23 22 40 40 H 1.09007 * 109.47019 * 209.99784 * 24 23 22 41 41 H 1.08996 * 109.47527 * 329.99294 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5785 1.2009 -0.0053 5 6 4.2734 0.0000 0.0001 6 8 5.6324 0.0000 0.0005 7 6 6.2812 1.2732 -0.0041 8 6 7.7753 1.0757 -0.0034 9 8 8.2388 -0.0452 0.0001 10 7 8.5962 2.1446 -0.0079 11 6 9.9554 1.9649 -0.0067 12 1 10.5849 2.6029 -0.6093 13 6 10.5230 0.9620 0.7697 14 7 11.7460 0.5509 0.5205 15 14 9.5475 0.1982 2.1677 16 1 8.8581 -1.0236 1.6805 17 1 10.4688 -0.1618 3.2753 18 1 8.5401 1.1725 2.6587 19 6 8.0363 3.4983 -0.0127 20 6 9.0194 4.6692 -0.0716 21 6 8.2701 4.3641 1.2269 22 6 3.5787 -1.2006 0.0054 23 6 2.1970 -1.1979 0.0048 24 6 1.4417 -2.5019 0.0112 25 1 -0.3633 0.0046 1.0277 26 1 -0.3633 0.8877 -0.5178 27 1 -0.3633 -0.8922 -0.5099 28 1 1.6560 2.1328 0.0004 29 1 4.1172 2.1370 -0.0090 30 1 5.9887 1.8267 -0.8964 31 1 5.9880 1.8336 0.8836 32 1 12.1421 -0.1495 1.0623 33 1 7.0858 3.6120 -0.5340 34 1 10.0827 4.4322 -0.1072 35 1 8.7158 5.5535 -0.6319 36 1 7.4737 5.0475 1.5210 37 1 8.8402 3.9262 2.0463 38 1 4.1173 -2.1367 0.0100 39 1 1.2591 -2.8111 1.0404 40 1 0.4896 -2.3728 -0.5037 41 1 2.0298 -3.2650 -0.4986 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067686930.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:24 Heat of formation + Delta-G solvation = -26.281996 kcal Electronic energy + Delta-G solvation = -22889.060336 eV Core-core repulsion = 19542.076181 eV Total energy + Delta-G solvation = -3346.984155 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.56316 -40.72920 -38.91952 -38.01151 -34.99633 -33.62385 -33.56498 -32.92779 -30.32011 -28.25292 -26.89915 -26.30274 -23.62126 -23.18068 -22.94615 -21.89042 -20.94910 -19.39211 -18.66966 -18.03714 -17.57526 -17.05233 -16.87666 -16.26163 -15.86803 -15.69824 -15.21252 -15.08333 -14.98494 -14.80217 -14.64838 -14.32542 -13.87793 -13.55964 -13.53308 -13.16910 -13.05061 -12.90528 -12.75118 -12.46273 -12.24318 -12.09443 -12.06437 -11.74805 -11.72340 -11.63164 -11.26169 -10.80008 -10.49773 -9.75561 -9.51537 -8.98951 -8.49192 -6.24304 0.35469 0.44639 1.09688 1.24089 1.47029 1.74249 1.80416 2.37213 2.74633 2.79123 2.91405 3.17305 3.57672 3.84067 3.90586 3.94547 4.04389 4.06127 4.11642 4.16672 4.28221 4.30287 4.34939 4.43120 4.73959 4.80503 4.84010 4.88500 4.92833 4.97179 5.03079 5.20074 5.21959 5.23536 5.41200 5.44007 5.45063 5.61391 5.72568 5.75587 5.91670 6.39930 6.65352 6.77847 7.22237 7.71037 8.57451 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021829 B = 0.004395 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.408964 B = 6369.925488 C = 7265.138870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.133 4.133 3 C -0.076 4.076 4 C -0.216 4.216 5 C 0.099 3.901 6 O -0.327 6.327 7 C 0.063 3.937 8 C 0.433 3.567 9 O -0.576 6.576 10 N -0.441 5.441 11 C -0.338 4.338 12 H 0.083 0.917 13 C 0.044 3.956 14 N -0.906 5.906 15 Si 0.964 3.036 16 H -0.282 1.282 17 H -0.308 1.308 18 H -0.268 1.268 19 C 0.032 3.968 20 C -0.163 4.163 21 C -0.183 4.183 22 C -0.176 4.176 23 C -0.054 4.054 24 C -0.116 4.116 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.156 0.844 29 H 0.147 0.853 30 H 0.118 0.882 31 H 0.106 0.894 32 H 0.273 0.727 33 H 0.157 0.843 34 H 0.076 0.924 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.065 0.935 38 H 0.115 0.885 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.342 6.059 -0.030 26.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.134 4.134 3 C -0.094 4.094 4 C -0.235 4.235 5 C 0.055 3.945 6 O -0.241 6.241 7 C -0.015 4.015 8 C 0.224 3.776 9 O -0.461 6.461 10 N -0.162 5.162 11 C -0.465 4.465 12 H 0.100 0.900 13 C -0.160 4.160 14 N -0.544 5.544 15 Si 0.796 3.204 16 H -0.210 1.210 17 H -0.238 1.238 18 H -0.193 1.193 19 C -0.072 4.072 20 C -0.200 4.200 21 C -0.221 4.221 22 C -0.195 4.195 23 C -0.055 4.055 24 C -0.172 4.172 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.173 0.827 29 H 0.164 0.836 30 H 0.136 0.864 31 H 0.124 0.876 32 H 0.083 0.917 33 H 0.174 0.826 34 H 0.095 0.905 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.084 0.916 38 H 0.133 0.867 39 H 0.100 0.900 40 H 0.112 0.888 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -24.815 5.263 -0.014 25.367 hybrid contribution 0.975 -0.654 0.614 1.325 sum -23.839 4.608 0.601 24.288 Atomic orbital electron populations 1.20831 0.88649 1.03868 1.03050 1.20098 0.97906 0.91987 1.03366 1.21188 0.92553 0.99012 0.96616 1.21503 0.96354 0.96642 1.08993 1.19452 0.81419 0.95886 0.97788 1.86143 1.17689 1.31346 1.88904 1.22480 0.88992 0.84919 1.05108 1.20797 0.89197 0.85390 0.82193 1.90524 1.77308 1.25374 1.52936 1.43201 1.04626 1.04005 1.64412 1.18753 0.80972 1.19473 1.27295 0.89971 1.25895 0.95537 0.95920 0.98666 1.69795 1.16885 1.28415 1.39314 0.85500 0.77928 0.80209 0.76714 1.20995 1.23809 1.19326 1.22384 1.00178 0.80306 1.04326 1.23174 0.98022 0.98049 1.00802 1.23356 1.04113 1.02948 0.91668 1.20480 0.94414 0.96001 1.08598 1.19856 0.91439 0.97107 0.97058 1.20938 1.00479 0.92399 1.03398 0.90504 0.90409 0.90307 0.82660 0.83569 0.86426 0.87637 0.91723 0.82559 0.90543 0.84875 0.84512 0.91600 0.86667 0.89994 0.88807 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 9.60 71.24 0.68 -0.56 16 2 C -0.13 -2.57 5.88 -19.85 -0.12 -2.69 16 3 C -0.08 -1.48 9.69 22.25 0.22 -1.27 16 4 C -0.22 -5.32 9.04 22.36 0.20 -5.12 16 5 C 0.10 3.23 6.69 22.51 0.15 3.39 16 6 O -0.33 -13.31 9.67 -73.39 -0.71 -14.02 16 7 C 0.06 2.25 3.85 71.24 0.27 2.53 16 8 C 0.43 21.23 5.95 87.66 0.52 21.75 16 9 O -0.58 -34.72 11.35 15.97 0.18 -34.54 16 10 N -0.44 -20.88 2.56 -613.13 -1.57 -22.45 16 11 C -0.34 -19.37 8.77 84.04 0.74 -18.63 16 12 H 0.08 4.91 6.96 -2.91 -0.02 4.89 16 13 C 0.04 2.73 4.91 84.93 0.42 3.15 16 14 N -0.91 -58.26 13.96 21.66 0.30 -57.96 16 15 Si 0.96 54.17 24.52 68.60 1.68 55.86 16 16 H -0.28 -17.35 6.10 99.48 0.61 -16.74 16 17 H -0.31 -16.70 7.11 99.48 0.71 -15.99 16 18 H -0.27 -13.99 7.11 99.48 0.71 -13.29 16 19 C 0.03 1.04 5.85 44.99 0.26 1.31 16 20 C -0.16 -4.91 9.80 30.59 0.30 -4.61 16 21 C -0.18 -5.31 10.37 30.59 0.32 -5.00 16 22 C -0.18 -5.33 9.64 22.37 0.22 -5.11 16 23 C -0.05 -1.25 5.88 -19.88 -0.12 -1.36 16 24 C -0.12 -1.86 9.60 71.23 0.68 -1.17 16 25 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.08 0.69 8.09 -2.39 -0.02 0.67 16 27 H 0.08 0.75 5.94 -2.39 -0.01 0.73 16 28 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 29 H 0.15 2.90 6.30 -2.91 -0.02 2.88 16 30 H 0.12 3.26 7.09 -2.39 -0.02 3.24 16 31 H 0.11 3.16 7.63 -2.39 -0.02 3.14 16 32 H 0.27 16.70 8.31 -92.71 -0.77 15.93 16 33 H 0.16 3.66 6.99 -2.39 -0.02 3.65 16 34 H 0.08 2.89 6.49 -2.39 -0.02 2.88 16 35 H 0.13 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.14 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.12 3.65 8.06 -2.91 -0.02 3.62 16 39 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.09 1.07 5.94 -2.38 -0.01 1.05 16 41 H 0.06 1.08 8.08 -2.39 -0.02 1.06 16 Total: -1.00 -82.67 332.52 5.57 -77.10 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 0.93 Total: 9.41 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: 4.75 Total: -13.40 kcal Atomic # 7 Polarization: -79.14 SS G_CDS: -1.27 Total: -80.41 kcal Atomic # 8 Polarization: -48.03 SS G_CDS: -0.53 Total: -48.56 kcal Atomic # 14 Polarization: 54.17 SS G_CDS: 1.68 Total: 55.86 kcal Total: -82.67 5.57 -77.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067686930.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.820 kcal (2) G-P(sol) polarization free energy of solvation -82.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds