Wall clock time and date at job start Tue Mar 31 2020 06:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38278 * 119.97581 * 2 1 4 4 C 1.38247 * 120.11409 * 180.02562 * 3 2 1 5 5 C 1.38164 * 120.05269 * 359.95377 * 4 3 2 6 6 C 1.38710 * 119.94682 * 0.02562 * 5 4 3 7 7 O 1.35895 * 120.05548 * 180.02562 * 6 5 4 8 8 C 1.42900 * 116.99817 * 174.73151 * 7 6 5 9 9 H 1.08999 * 109.47107 * 326.03588 * 8 7 6 10 10 C 1.52998 * 109.47378 * 86.03953 * 8 7 6 11 11 C 1.50706 * 109.46975 * 206.03981 * 8 7 6 12 12 O 1.21296 * 119.99969 * 359.97438 * 11 8 7 13 13 N 1.34777 * 120.00072 * 179.97438 * 11 8 7 14 14 C 1.37096 * 119.99726 * 179.97438 * 13 11 8 15 15 H 1.08007 * 120.00072 * 223.95656 * 14 13 11 16 16 C 1.38949 * 120.00210 * 43.96453 * 14 13 11 17 17 N 1.31403 * 119.99879 * 17.43807 * 16 14 13 18 18 Si 1.86799 * 120.00102 * 197.44450 * 16 14 13 19 19 H 1.48504 * 109.47097 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47414 * 119.99304 * 18 16 14 21 21 H 1.48496 * 109.47174 * 239.99600 * 18 16 14 22 22 C 1.46493 * 119.99965 * 0.02562 * 13 11 8 23 23 C 1.53001 * 117.50108 * 187.05830 * 22 13 11 24 24 C 1.53005 * 117.50385 * 118.39688 * 22 13 11 25 25 C 1.38123 * 119.96796 * 179.72994 * 2 1 3 26 26 H 1.09001 * 109.47588 * 89.99921 * 1 2 3 27 27 H 1.08998 * 109.46979 * 209.99914 * 1 2 3 28 28 H 1.08998 * 109.46815 * 329.99354 * 1 2 3 29 29 H 1.08007 * 119.94513 * 359.97438 * 3 2 1 30 30 H 1.07999 * 119.96943 * 179.97438 * 4 3 2 31 31 H 1.07998 * 120.02450 * 180.02562 * 5 4 3 32 32 H 1.09008 * 109.47216 * 60.00001 * 10 8 7 33 33 H 1.08998 * 109.47263 * 179.97438 * 10 8 7 34 34 H 1.09000 * 109.46861 * 300.00011 * 10 8 7 35 35 H 0.97005 * 119.99941 * 184.96096 * 17 16 14 36 36 H 1.09003 * 115.55084 * 332.72384 * 22 13 11 37 37 H 1.09005 * 117.49536 * 359.97438 * 23 22 13 38 38 H 1.09000 * 117.50351 * 145.01402 * 23 22 13 39 39 H 1.08999 * 117.50245 * 214.97923 * 24 22 13 40 40 H 1.08997 * 117.49215 * 359.97438 * 24 22 13 41 41 H 1.07997 * 120.03021 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1978 0.0000 4 6 3.5803 1.2012 -0.0005 5 6 4.2751 0.0069 -0.0001 6 6 3.5845 -1.1960 0.0003 7 8 4.2656 -2.3719 0.0013 8 6 3.4936 -3.5687 0.1186 9 1 2.6287 -3.3822 0.7551 10 6 3.0209 -4.0087 -1.2684 11 6 4.3412 -4.6554 0.7286 12 8 5.4931 -4.4275 1.0324 13 7 3.8191 -5.8804 0.9364 14 6 4.5903 -6.8691 1.4908 15 1 4.5665 -7.8674 1.0792 16 6 5.4025 -6.5869 2.5823 17 7 5.1923 -5.5031 3.2949 18 14 6.7933 -7.7482 3.0367 19 1 6.8183 -8.8872 2.0841 20 1 8.0864 -7.0208 2.9732 21 1 6.5805 -8.2603 4.4142 22 6 2.4281 -6.1558 0.5689 23 6 1.8437 -7.5092 0.9787 24 6 2.1766 -7.2319 -0.4894 25 6 2.1969 -1.1966 0.0056 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.6565 2.1324 -0.0004 30 1 4.1176 2.1380 -0.0010 31 1 5.3551 0.0101 -0.0001 32 1 3.8859 -4.1953 -1.9049 33 1 2.4324 -4.9218 -1.1789 34 1 2.4079 -3.2227 -1.7095 35 1 5.8020 -5.2682 4.0119 36 1 1.7596 -5.2949 0.5800 37 1 2.4945 -8.1948 1.5215 38 1 0.7908 -7.5387 1.2591 39 1 1.3426 -7.0790 -1.1743 40 1 3.0463 -7.7345 -0.9125 41 1 1.6569 -2.1318 0.0105 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068230534.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:28 Heat of formation + Delta-G solvation = -23.677851 kcal Electronic energy + Delta-G solvation = -23467.355964 eV Core-core repulsion = 20120.484733 eV Total energy + Delta-G solvation = -3346.871231 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.55694 -40.33063 -38.58317 -37.65962 -34.84649 -33.93457 -33.17502 -32.07159 -30.82137 -27.78538 -27.22643 -25.41445 -23.53967 -23.08044 -22.58642 -22.40073 -21.17973 -18.91112 -18.46099 -17.94615 -17.01586 -16.81097 -16.53926 -16.41172 -15.88479 -15.43879 -15.32999 -14.93320 -14.65774 -14.36282 -14.31208 -14.07586 -13.77484 -13.28868 -13.28000 -13.01736 -12.85824 -12.77351 -12.73882 -12.54030 -12.30339 -12.23973 -12.06984 -11.85523 -11.71430 -11.55091 -11.23074 -10.74891 -10.00183 -9.73495 -9.12484 -9.03833 -8.22386 -6.06894 0.38392 0.50567 1.33805 1.41054 1.49326 1.98656 2.15545 2.39059 2.82370 3.06544 3.12960 3.30927 3.68464 3.84069 3.90121 3.99623 4.06160 4.12179 4.19641 4.22594 4.36918 4.41884 4.46141 4.63824 4.69308 4.78999 4.85346 4.88480 4.91156 4.95956 5.00800 5.15280 5.26978 5.30611 5.41397 5.44469 5.49809 5.50915 5.66145 5.93023 6.13896 6.49465 6.95323 7.14198 7.58169 8.23908 8.82779 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019156 B = 0.004977 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.311804 B = 5624.589917 C = 6536.801297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.051 4.051 3 C -0.165 4.165 4 C -0.073 4.073 5 C -0.187 4.187 6 C 0.109 3.891 7 O -0.320 6.320 8 C 0.083 3.917 9 H 0.090 0.910 10 C -0.166 4.166 11 C 0.467 3.533 12 O -0.576 6.576 13 N -0.433 5.433 14 C -0.349 4.349 15 H 0.086 0.914 16 C 0.017 3.983 17 N -0.873 5.873 18 Si 0.967 3.033 19 H -0.253 1.253 20 H -0.297 1.297 21 H -0.273 1.273 22 C 0.035 3.965 23 C -0.170 4.170 24 C -0.176 4.176 25 C -0.224 4.224 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.155 0.845 30 H 0.156 0.844 31 H 0.117 0.883 32 H 0.052 0.948 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.258 0.742 36 H 0.128 0.872 37 H 0.081 0.919 38 H 0.120 0.880 39 H 0.131 0.869 40 H 0.077 0.923 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.801 8.450 -8.673 18.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.051 4.051 3 C -0.183 4.183 4 C -0.091 4.091 5 C -0.206 4.206 6 C 0.064 3.936 7 O -0.233 6.233 8 C 0.024 3.976 9 H 0.107 0.893 10 C -0.223 4.223 11 C 0.255 3.745 12 O -0.456 6.456 13 N -0.154 5.154 14 C -0.476 4.476 15 H 0.104 0.896 16 C -0.189 4.189 17 N -0.508 5.508 18 Si 0.792 3.208 19 H -0.176 1.176 20 H -0.224 1.224 21 H -0.198 1.198 22 C -0.070 4.070 23 C -0.208 4.208 24 C -0.214 4.214 25 C -0.242 4.242 26 H 0.106 0.894 27 H 0.087 0.913 28 H 0.103 0.897 29 H 0.172 0.828 30 H 0.173 0.827 31 H 0.135 0.865 32 H 0.072 0.928 33 H 0.125 0.875 34 H 0.106 0.894 35 H 0.067 0.933 36 H 0.145 0.855 37 H 0.100 0.900 38 H 0.138 0.862 39 H 0.149 0.851 40 H 0.095 0.905 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.988 8.576 -8.332 17.654 hybrid contribution 1.338 -0.631 0.742 1.655 sum -11.649 7.945 -7.590 16.014 Atomic orbital electron populations 1.20880 0.88518 1.03867 1.03635 1.20136 0.97791 0.91867 0.95291 1.21317 0.93942 0.98493 1.04524 1.21249 0.94821 0.96899 0.96139 1.20664 1.00474 0.90699 1.08790 1.19566 0.91963 0.85849 0.96237 1.86176 1.36856 1.12778 1.87538 1.22172 0.93105 0.82882 0.99475 0.89281 1.22438 1.02342 1.04256 0.93240 1.20332 0.87615 0.84697 0.81824 1.90504 1.20806 1.81119 1.53203 1.42800 1.08526 1.09250 1.54853 1.19198 1.25231 0.92373 1.10799 0.89614 1.26099 1.00913 0.97880 0.94031 1.69988 1.35147 1.27312 1.18382 0.85309 0.78433 0.78676 0.78418 1.17616 1.22408 1.19842 1.22130 0.85213 0.94436 1.05174 1.23202 1.01634 0.98079 0.97852 1.23405 1.03398 1.02428 0.92173 1.21349 0.92108 1.00347 1.10407 0.89413 0.91269 0.89655 0.82781 0.82663 0.86459 0.92834 0.87515 0.89427 0.93318 0.85505 0.90046 0.86161 0.85083 0.90461 0.84723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 10.01 71.24 0.71 -1.02 16 2 C -0.05 -1.19 5.88 -19.88 -0.12 -1.30 16 3 C -0.16 -3.54 9.70 22.28 0.22 -3.32 16 4 C -0.07 -1.79 10.04 22.25 0.22 -1.56 16 5 C -0.19 -6.17 9.99 22.37 0.22 -5.95 16 6 C 0.11 4.03 6.61 22.51 0.15 4.18 16 7 O -0.32 -14.52 9.33 -73.34 -0.68 -15.21 16 8 C 0.08 3.49 1.85 29.85 0.06 3.54 16 9 H 0.09 3.44 5.64 -2.39 -0.01 3.43 16 10 C -0.17 -5.27 8.84 71.98 0.64 -4.63 16 11 C 0.47 25.29 6.44 87.66 0.56 25.86 16 12 O -0.58 -37.73 14.20 15.96 0.23 -37.50 16 13 N -0.43 -21.77 2.85 -613.11 -1.74 -23.52 16 14 C -0.35 -19.32 7.81 84.04 0.66 -18.66 16 15 H 0.09 4.52 7.41 -2.91 -0.02 4.50 16 16 C 0.02 0.97 4.41 84.93 0.37 1.34 16 17 N -0.87 -55.06 11.65 21.66 0.25 -54.81 16 18 Si 0.97 46.59 29.59 68.60 2.03 48.62 16 19 H -0.25 -11.26 7.11 99.48 0.71 -10.56 16 20 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 21 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 22 C 0.04 1.29 4.30 44.99 0.19 1.48 16 23 C -0.17 -5.47 9.81 30.62 0.30 -5.16 16 24 C -0.18 -5.08 9.36 30.62 0.29 -4.79 16 25 C -0.22 -6.66 7.95 22.37 0.18 -6.49 16 26 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 27 H 0.07 1.06 8.08 -2.39 -0.02 1.04 16 28 H 0.08 1.02 8.08 -2.39 -0.02 1.00 16 29 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 30 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 31 H 0.12 3.95 8.06 -2.91 -0.02 3.92 16 32 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 33 H 0.11 2.96 4.34 -2.39 -0.01 2.95 16 34 H 0.09 2.27 7.07 -2.39 -0.02 2.25 16 35 H 0.26 15.82 8.32 -92.70 -0.77 15.05 16 36 H 0.13 3.97 6.28 -2.39 -0.01 3.95 16 37 H 0.08 3.09 6.83 -2.38 -0.02 3.07 16 38 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 39 H 0.13 2.66 8.14 -2.39 -0.02 2.65 16 40 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.14 3.68 5.49 -2.91 -0.02 3.67 16 Total: -1.00 -80.56 334.36 5.77 -74.79 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 1.03 Total: 24.14 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: 4.65 Total: -16.50 kcal Atomic # 7 Polarization: -76.84 SS G_CDS: -1.49 Total: -78.33 kcal Atomic # 8 Polarization: -52.25 SS G_CDS: -0.46 Total: -52.71 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -80.56 5.77 -74.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068230534.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.110 kcal (2) G-P(sol) polarization free energy of solvation -80.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds