Wall clock time and date at job start Tue Mar 31 2020 06:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38270 * 119.94051 * 2 1 4 4 C 1.38146 * 120.05205 * 179.97438 * 3 2 1 5 5 C 1.38732 * 119.94281 * 0.02562 * 4 3 2 6 6 O 1.35904 * 120.05189 * 179.97438 * 5 4 3 7 7 C 1.42895 * 117.00158 * 354.56811 * 6 5 4 8 8 H 1.09001 * 109.47636 * 324.66703 * 7 6 5 9 9 C 1.53006 * 109.47343 * 84.66251 * 7 6 5 10 10 C 1.50705 * 109.47307 * 204.66282 * 7 6 5 11 11 O 1.21293 * 119.99681 * 0.02562 * 10 7 6 12 12 N 1.34778 * 119.99849 * 180.02562 * 10 7 6 13 13 C 1.37097 * 119.99585 * 180.02562 * 12 10 7 14 14 H 1.07996 * 119.99775 * 224.02495 * 13 12 10 15 15 C 1.38952 * 120.00231 * 44.02495 * 13 12 10 16 16 N 1.31412 * 119.99851 * 19.65753 * 15 13 12 17 17 Si 1.86802 * 120.00113 * 199.65682 * 15 13 12 18 18 H 1.48503 * 109.46884 * 59.99882 * 17 15 13 19 19 H 1.48497 * 109.47396 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46873 * 300.00190 * 17 15 13 21 21 C 1.46492 * 120.00343 * 359.97438 * 12 10 7 22 22 C 1.53003 * 117.50076 * 187.71170 * 21 12 10 23 23 C 1.53004 * 117.50007 * 119.04829 * 21 12 10 24 24 C 1.38730 * 119.89117 * 0.27060 * 5 4 3 25 25 C 1.38149 * 119.94178 * 359.43182 * 24 5 4 26 26 H 1.09000 * 109.47333 * 89.99543 * 1 2 3 27 27 H 1.08998 * 109.46945 * 209.99603 * 1 2 3 28 28 H 1.09007 * 109.47158 * 329.99425 * 1 2 3 29 29 H 1.08005 * 119.97567 * 359.97438 * 3 2 1 30 30 H 1.08002 * 120.02521 * 179.97438 * 4 3 2 31 31 H 1.08998 * 109.46709 * 300.00394 * 9 7 6 32 32 H 1.09001 * 109.46617 * 60.00187 * 9 7 6 33 33 H 1.08996 * 109.47321 * 179.97438 * 9 7 6 34 34 H 0.96998 * 119.99615 * 184.95223 * 16 15 13 35 35 H 1.09008 * 115.54952 * 333.37835 * 21 12 10 36 36 H 1.09003 * 117.49683 * 359.97438 * 22 21 12 37 37 H 1.08996 * 117.50158 * 145.02679 * 22 21 12 38 38 H 1.08993 * 117.49855 * 214.97839 * 23 21 12 39 39 H 1.09003 * 117.49775 * 359.97438 * 23 21 12 40 40 H 1.07999 * 120.02698 * 179.71757 * 24 5 4 41 41 H 1.07996 * 119.97214 * 180.27563 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1982 0.0000 4 6 3.5786 1.2009 0.0005 5 6 4.2734 0.0001 0.0005 6 8 5.6324 0.0001 0.0005 7 6 6.2811 1.2676 -0.1200 8 1 5.6991 1.9126 -0.7783 9 6 6.3931 1.9167 1.2611 10 6 7.6597 1.0736 -0.6971 11 8 8.0482 -0.0406 -0.9780 12 7 8.4608 2.1381 -0.9010 13 6 9.7147 1.9615 -1.4265 14 1 10.5569 2.4882 -1.0026 15 6 9.9020 1.1050 -2.5045 16 7 8.8819 0.7688 -3.2616 17 14 11.6040 0.4316 -2.8777 18 1 12.0950 -0.3463 -1.7119 19 1 11.5366 -0.4514 -4.0697 20 1 12.5335 1.5576 -3.1483 21 6 7.9914 3.4837 -0.5623 22 6 8.8693 4.6646 -0.9815 23 6 8.7799 4.2623 0.4928 24 6 3.5786 -1.2007 -0.0057 25 6 2.1971 -1.1980 0.0000 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5140 29 1 1.6557 2.1327 -0.0004 30 1 4.1172 2.1370 0.0001 31 1 5.3960 2.0570 1.6784 32 1 6.9752 1.2718 1.9194 33 1 6.8883 2.8833 1.1692 34 1 8.9976 0.1158 -3.9694 35 1 6.9109 3.6254 -0.5892 36 1 9.7964 4.4402 -1.5090 37 1 8.3665 5.5833 -1.2837 38 1 8.2182 4.9164 1.1596 39 1 9.6477 3.7730 0.9351 40 1 4.1173 -2.1368 -0.0103 41 1 1.6558 -2.1325 -0.0003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068230542.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:31 Heat of formation + Delta-G solvation = -4.543328 kcal Electronic energy + Delta-G solvation = -23301.968145 eV Core-core repulsion = 19955.926649 eV Total energy + Delta-G solvation = -3346.041496 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.14711 -38.76958 -37.31417 -35.95971 -32.90549 -32.26144 -31.47320 -30.86909 -30.15085 -26.32290 -25.27952 -23.70982 -22.63999 -21.79201 -21.28765 -20.87644 -19.43785 -17.87807 -16.72977 -16.17268 -15.44857 -15.21903 -15.00413 -14.75313 -14.27252 -14.19649 -13.80632 -13.55533 -13.42978 -13.31484 -12.96515 -12.77657 -12.30788 -12.22047 -11.85712 -11.56172 -11.37542 -11.35414 -11.03936 -10.92935 -10.83058 -10.81060 -10.53061 -10.33839 -10.18117 -9.99148 -9.78213 -8.86018 -8.71511 -8.08426 -7.75382 -7.12623 -6.13978 -3.94004 1.48420 1.59613 3.29469 3.38650 3.40700 3.46933 3.90040 3.98875 4.28754 4.67063 4.79054 4.91847 4.94716 5.05080 5.14544 5.27972 5.32979 5.45861 5.48155 5.50262 5.53126 5.56611 5.65897 5.68072 5.82601 5.84515 5.89111 6.05222 6.06491 6.15596 6.19751 6.35252 6.44126 6.49448 6.58678 6.65921 6.71004 6.88784 6.97058 7.57551 7.79224 8.22308 8.97310 9.09036 9.56905 10.17605 10.93022 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020727 B = 0.004579 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.601958 B = 6112.845850 C = 6986.041965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.141 4.141 3 C -0.080 4.080 4 C -0.211 4.211 5 C 0.140 3.860 6 O -0.281 6.281 7 C 0.071 3.929 8 H 0.080 0.920 9 C -0.181 4.181 10 C 0.489 3.511 11 O -0.512 6.512 12 N -0.421 5.421 13 C -0.348 4.348 14 H 0.080 0.920 15 C 0.075 3.925 16 N -0.831 5.831 17 Si 0.910 3.090 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.069 3.931 22 C -0.173 4.173 23 C -0.207 4.207 24 C -0.152 4.152 25 C -0.081 4.081 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.120 0.880 30 H 0.129 0.871 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.267 0.733 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.130 0.870 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.582 4.179 7.013 14.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.141 4.141 3 C -0.098 4.098 4 C -0.230 4.230 5 C 0.093 3.907 6 O -0.193 6.193 7 C 0.011 3.989 8 H 0.098 0.902 9 C -0.239 4.239 10 C 0.275 3.725 11 O -0.387 6.387 12 N -0.143 5.143 13 C -0.474 4.474 14 H 0.098 0.902 15 C -0.136 4.136 16 N -0.464 5.464 17 Si 0.736 3.264 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.203 1.203 21 C -0.037 4.037 22 C -0.211 4.211 23 C -0.246 4.246 24 C -0.171 4.171 25 C -0.099 4.099 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.138 0.862 30 H 0.147 0.853 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.120 0.880 36 H 0.127 0.873 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.112 0.888 40 H 0.148 0.852 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.285 3.330 6.652 14.362 hybrid contribution 0.662 -0.012 -0.324 0.737 sum -11.623 3.318 6.328 13.644 Atomic orbital electron populations 1.20664 0.91453 1.02196 1.01824 1.19734 0.95887 0.93155 1.05301 1.20766 0.93244 0.97439 0.98376 1.21338 0.95234 0.97498 1.08893 1.19207 0.83306 0.94035 0.94119 1.86245 1.14984 1.31615 1.86438 1.22369 0.95128 0.83753 0.97663 0.90240 1.22537 1.02539 1.02643 0.96145 1.19297 0.85122 0.85717 0.82357 1.90560 1.73841 1.23648 1.50676 1.42583 1.14398 1.00556 1.56783 1.18809 0.83421 1.32289 1.12916 0.90195 1.25217 0.97909 0.97251 0.93273 1.69867 1.32017 1.28420 1.16113 0.86327 0.83180 0.79009 0.77876 1.19901 1.21141 1.20262 1.21782 0.94764 0.85109 1.02054 1.23131 1.03611 0.97472 0.96858 1.23366 1.04244 1.04594 0.92364 1.20461 0.93657 0.96627 1.06357 1.20776 0.92932 0.97536 0.98697 0.91754 0.91984 0.92024 0.86177 0.85294 0.92213 0.91270 0.89178 0.92326 0.87997 0.87313 0.89728 0.89653 0.88814 0.85206 0.85781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.94 10.01 36.01 0.36 -0.58 16 2 C -0.14 -1.74 5.88 -104.60 -0.62 -2.35 16 3 C -0.08 -1.04 9.69 -39.60 -0.38 -1.42 16 4 C -0.21 -3.21 8.23 -39.43 -0.32 -3.54 16 5 C 0.14 2.50 6.60 -39.22 -0.26 2.24 16 6 O -0.28 -6.02 9.33 -39.35 -0.37 -6.39 16 7 C 0.07 1.45 1.86 -27.88 -0.05 1.40 16 8 H 0.08 1.52 5.76 -51.93 -0.30 1.22 16 9 C -0.18 -2.96 8.79 37.16 0.33 -2.64 16 10 C 0.49 12.68 6.46 -10.98 -0.07 12.61 16 11 O -0.51 -15.69 14.29 -14.36 -0.21 -15.90 16 12 N -0.42 -10.39 2.84 -107.73 -0.31 -10.69 16 13 C -0.35 -9.41 7.77 -14.93 -0.12 -9.52 16 14 H 0.08 2.07 7.46 -52.49 -0.39 1.68 16 15 C 0.07 2.10 4.34 -17.47 -0.08 2.02 16 16 N -0.83 -24.87 11.83 55.50 0.66 -24.21 16 17 Si 0.91 21.96 29.60 -169.99 -5.03 16.93 16 18 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 C 0.07 1.32 4.30 -67.93 -0.29 1.03 16 22 C -0.17 -3.00 9.81 -26.69 -0.26 -3.26 16 23 C -0.21 -3.32 9.40 -26.69 -0.25 -3.58 16 24 C -0.15 -2.42 9.99 -39.43 -0.39 -2.82 16 25 C -0.08 -1.07 9.69 -39.61 -0.38 -1.45 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 28 H 0.06 0.49 8.08 -51.92 -0.42 0.07 16 29 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 30 H 0.13 1.82 5.42 -52.49 -0.28 1.54 16 31 H 0.06 0.83 6.88 -51.93 -0.36 0.47 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.09 1.36 4.37 -51.93 -0.23 1.13 16 34 H 0.27 7.72 8.32 -40.82 -0.34 7.38 16 35 H 0.10 1.72 6.23 -51.92 -0.32 1.40 16 36 H 0.11 2.12 6.85 -51.93 -0.36 1.76 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 40 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 41 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 334.37 15.07 5.04 5.04 Total: -1.00 -33.64 334.37 -8.60 -42.25 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.60 Total: 4.84 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -2.79 Total: -11.86 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 0.35 Total: -34.91 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.57 Total: -22.28 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.64 -8.60 -42.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068230542.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.704 kcal (2) G-P(sol) polarization free energy of solvation -33.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds