Wall clock time and date at job start Tue Mar 31 2020 06:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38270 * 119.94051 * 2 1 4 4 C 1.38146 * 120.05205 * 179.97438 * 3 2 1 5 5 C 1.38732 * 119.94281 * 0.02562 * 4 3 2 6 6 O 1.35904 * 120.05189 * 179.97438 * 5 4 3 7 7 C 1.42895 * 117.00158 * 354.56811 * 6 5 4 8 8 H 1.09001 * 109.47636 * 324.66703 * 7 6 5 9 9 C 1.53006 * 109.47343 * 84.66251 * 7 6 5 10 10 C 1.50705 * 109.47307 * 204.66282 * 7 6 5 11 11 O 1.21293 * 119.99681 * 0.02562 * 10 7 6 12 12 N 1.34778 * 119.99849 * 180.02562 * 10 7 6 13 13 C 1.37097 * 119.99585 * 180.02562 * 12 10 7 14 14 H 1.07996 * 119.99775 * 224.02495 * 13 12 10 15 15 C 1.38952 * 120.00231 * 44.02495 * 13 12 10 16 16 N 1.31412 * 119.99851 * 19.65753 * 15 13 12 17 17 Si 1.86802 * 120.00113 * 199.65682 * 15 13 12 18 18 H 1.48503 * 109.46884 * 59.99882 * 17 15 13 19 19 H 1.48497 * 109.47396 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46873 * 300.00190 * 17 15 13 21 21 C 1.46492 * 120.00343 * 359.97438 * 12 10 7 22 22 C 1.53003 * 117.50076 * 187.71170 * 21 12 10 23 23 C 1.53004 * 117.50007 * 119.04829 * 21 12 10 24 24 C 1.38730 * 119.89117 * 0.27060 * 5 4 3 25 25 C 1.38149 * 119.94178 * 359.43182 * 24 5 4 26 26 H 1.09000 * 109.47333 * 89.99543 * 1 2 3 27 27 H 1.08998 * 109.46945 * 209.99603 * 1 2 3 28 28 H 1.09007 * 109.47158 * 329.99425 * 1 2 3 29 29 H 1.08005 * 119.97567 * 359.97438 * 3 2 1 30 30 H 1.08002 * 120.02521 * 179.97438 * 4 3 2 31 31 H 1.08998 * 109.46709 * 300.00394 * 9 7 6 32 32 H 1.09001 * 109.46617 * 60.00187 * 9 7 6 33 33 H 1.08996 * 109.47321 * 179.97438 * 9 7 6 34 34 H 0.96998 * 119.99615 * 184.95223 * 16 15 13 35 35 H 1.09008 * 115.54952 * 333.37835 * 21 12 10 36 36 H 1.09003 * 117.49683 * 359.97438 * 22 21 12 37 37 H 1.08996 * 117.50158 * 145.02679 * 22 21 12 38 38 H 1.08993 * 117.49855 * 214.97839 * 23 21 12 39 39 H 1.09003 * 117.49775 * 359.97438 * 23 21 12 40 40 H 1.07999 * 120.02698 * 179.71757 * 24 5 4 41 41 H 1.07996 * 119.97214 * 180.27563 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1982 0.0000 4 6 3.5786 1.2009 0.0005 5 6 4.2734 0.0001 0.0005 6 8 5.6324 0.0001 0.0005 7 6 6.2811 1.2676 -0.1200 8 1 5.6991 1.9126 -0.7783 9 6 6.3931 1.9167 1.2611 10 6 7.6597 1.0736 -0.6971 11 8 8.0482 -0.0406 -0.9780 12 7 8.4608 2.1381 -0.9010 13 6 9.7147 1.9615 -1.4265 14 1 10.5569 2.4882 -1.0026 15 6 9.9020 1.1050 -2.5045 16 7 8.8819 0.7688 -3.2616 17 14 11.6040 0.4316 -2.8777 18 1 12.0950 -0.3463 -1.7119 19 1 11.5366 -0.4514 -4.0697 20 1 12.5335 1.5576 -3.1483 21 6 7.9914 3.4837 -0.5623 22 6 8.8693 4.6646 -0.9815 23 6 8.7799 4.2623 0.4928 24 6 3.5786 -1.2007 -0.0057 25 6 2.1971 -1.1980 0.0000 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5140 29 1 1.6557 2.1327 -0.0004 30 1 4.1172 2.1370 0.0001 31 1 5.3960 2.0570 1.6784 32 1 6.9752 1.2718 1.9194 33 1 6.8883 2.8833 1.1692 34 1 8.9976 0.1158 -3.9694 35 1 6.9109 3.6254 -0.5892 36 1 9.7964 4.4402 -1.5090 37 1 8.3665 5.5833 -1.2837 38 1 8.2182 4.9164 1.1596 39 1 9.6477 3.7730 0.9351 40 1 4.1173 -2.1368 -0.0103 41 1 1.6558 -2.1325 -0.0003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068230542.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:31 Heat of formation + Delta-G solvation = -24.303746 kcal Electronic energy + Delta-G solvation = -23302.825021 eV Core-core repulsion = 19955.926649 eV Total energy + Delta-G solvation = -3346.898372 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.54649 -40.33500 -38.63528 -37.67998 -34.85257 -33.70684 -32.81187 -32.21618 -31.57583 -27.33551 -27.19630 -25.17036 -23.87956 -23.14348 -22.72406 -22.22630 -21.11513 -19.25365 -18.47486 -17.94139 -16.87242 -16.71804 -16.42046 -16.29209 -15.82534 -15.44525 -15.31051 -15.07184 -14.65133 -14.46198 -14.34631 -14.19981 -13.77557 -13.30957 -13.25638 -12.95525 -12.83774 -12.78513 -12.70551 -12.50230 -12.36170 -12.23195 -12.13545 -11.79872 -11.67115 -11.53996 -11.22649 -10.71701 -10.01861 -9.93141 -9.09818 -8.94549 -8.24236 -6.06786 0.39579 0.47315 1.33792 1.42851 1.46825 1.98793 2.13889 2.39316 2.81162 3.05613 3.13110 3.30917 3.69409 3.84687 3.93835 3.99893 4.06012 4.11128 4.12980 4.22219 4.36486 4.41891 4.47924 4.58467 4.70887 4.80020 4.85484 4.91283 4.93760 5.00576 5.12625 5.16108 5.21150 5.27223 5.40021 5.44043 5.44775 5.49969 5.69483 5.92331 6.13277 6.49583 6.94787 7.13251 7.57573 8.22506 8.81113 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020727 B = 0.004579 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.601958 B = 6112.845850 C = 6986.041965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.133 4.133 3 C -0.081 4.081 4 C -0.215 4.215 5 C 0.099 3.901 6 O -0.321 6.321 7 C 0.084 3.916 8 H 0.091 0.909 9 C -0.167 4.167 10 C 0.469 3.531 11 O -0.579 6.579 12 N -0.432 5.432 13 C -0.354 4.354 14 H 0.086 0.914 15 C 0.021 3.979 16 N -0.872 5.872 17 Si 0.966 3.034 18 H -0.282 1.282 19 H -0.289 1.289 20 H -0.251 1.251 21 C 0.035 3.965 22 C -0.171 4.171 23 C -0.175 4.175 24 C -0.174 4.174 25 C -0.081 4.081 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.154 0.846 30 H 0.139 0.861 31 H 0.089 0.911 32 H 0.052 0.948 33 H 0.106 0.894 34 H 0.258 0.742 35 H 0.129 0.871 36 H 0.080 0.920 37 H 0.120 0.880 38 H 0.131 0.869 39 H 0.077 0.923 40 H 0.118 0.882 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.948 6.724 8.367 18.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.134 4.134 3 C -0.098 4.098 4 C -0.233 4.233 5 C 0.054 3.946 6 O -0.234 6.234 7 C 0.024 3.976 8 H 0.108 0.892 9 C -0.224 4.224 10 C 0.257 3.743 11 O -0.460 6.460 12 N -0.153 5.153 13 C -0.481 4.481 14 H 0.103 0.897 15 C -0.185 4.185 16 N -0.507 5.507 17 Si 0.790 3.210 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.175 1.175 21 C -0.069 4.069 22 C -0.208 4.208 23 C -0.214 4.214 24 C -0.193 4.193 25 C -0.099 4.099 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.171 0.829 30 H 0.156 0.844 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.125 0.875 34 H 0.068 0.932 35 H 0.146 0.854 36 H 0.099 0.901 37 H 0.138 0.862 38 H 0.149 0.851 39 H 0.095 0.905 40 H 0.136 0.864 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -14.649 5.949 8.028 17.732 hybrid contribution 1.280 -0.768 -0.686 1.643 sum -13.368 5.180 7.342 16.108 Atomic orbital electron populations 1.20746 0.88504 1.03811 1.02928 1.20244 0.97985 0.92491 1.02651 1.21192 0.92382 0.99205 0.97056 1.21504 0.96378 0.96715 1.08712 1.19557 0.82000 0.95868 0.97218 1.86173 1.17330 1.32289 1.87642 1.22162 0.91778 0.84054 0.99616 0.89186 1.22463 1.04225 1.02383 0.93346 1.20339 0.87302 0.85111 0.81583 1.90498 1.75818 1.26151 1.53529 1.42795 1.13826 1.02841 1.55842 1.19120 0.85113 1.31743 1.12145 0.89658 1.26071 1.01086 0.97794 0.93536 1.69981 1.34135 1.29506 1.17119 0.85450 0.79724 0.78874 0.76942 1.20839 1.21511 1.17474 1.22145 0.96647 0.82788 1.05362 1.23196 1.02091 0.97750 0.97786 1.23403 1.02878 1.02978 0.92112 1.20655 0.95132 0.95939 1.07536 1.21118 0.91682 0.99448 0.97667 0.90730 0.90609 0.90320 0.82869 0.84361 0.89253 0.92863 0.87541 0.93237 0.85389 0.90122 0.86189 0.85073 0.90463 0.86355 0.83065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.41 10.01 71.24 0.71 -0.70 16 2 C -0.13 -2.89 5.88 -19.85 -0.12 -3.01 16 3 C -0.08 -1.84 9.69 22.26 0.22 -1.62 16 4 C -0.21 -6.23 8.23 22.37 0.18 -6.05 16 5 C 0.10 3.60 6.60 22.51 0.15 3.74 16 6 O -0.32 -14.44 9.33 -73.43 -0.69 -15.13 16 7 C 0.08 3.47 1.86 29.85 0.06 3.53 16 8 H 0.09 3.44 5.76 -2.39 -0.01 3.42 16 9 C -0.17 -5.27 8.79 71.98 0.63 -4.63 16 10 C 0.47 25.30 6.46 87.66 0.57 25.86 16 11 O -0.58 -37.86 14.29 15.97 0.23 -37.63 16 12 N -0.43 -21.73 2.84 -613.12 -1.74 -23.47 16 13 C -0.35 -19.67 7.77 84.04 0.65 -19.01 16 14 H 0.09 4.50 7.46 -2.91 -0.02 4.48 16 15 C 0.02 1.25 4.34 84.93 0.37 1.61 16 16 N -0.87 -54.85 11.83 21.66 0.26 -54.60 16 17 Si 0.97 46.66 29.60 68.60 2.03 48.69 16 18 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 19 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 20 H -0.25 -10.91 7.11 99.48 0.71 -10.20 16 21 C 0.04 1.29 4.30 45.00 0.19 1.48 16 22 C -0.17 -5.52 9.81 30.62 0.30 -5.22 16 23 C -0.18 -5.08 9.40 30.62 0.29 -4.80 16 24 C -0.17 -5.69 9.99 22.37 0.22 -5.46 16 25 C -0.08 -2.01 9.69 22.25 0.22 -1.79 16 26 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.07 0.86 8.08 -2.39 -0.02 0.84 16 28 H 0.08 0.85 8.08 -2.38 -0.02 0.83 16 29 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 30 H 0.14 3.61 5.42 -2.91 -0.02 3.59 16 31 H 0.09 2.27 6.88 -2.39 -0.02 2.25 16 32 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.11 2.93 4.37 -2.39 -0.01 2.92 16 34 H 0.26 15.88 8.32 -92.71 -0.77 15.11 16 35 H 0.13 3.98 6.23 -2.38 -0.01 3.97 16 36 H 0.08 3.09 6.85 -2.39 -0.02 3.07 16 37 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 38 H 0.13 2.67 8.14 -2.39 -0.02 2.65 16 39 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 40 H 0.12 3.95 8.06 -2.91 -0.02 3.93 16 41 H 0.15 2.79 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -80.11 334.37 5.76 -74.35 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 1.03 Total: 23.84 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: 4.64 Total: -16.06 kcal Atomic # 7 Polarization: -76.58 SS G_CDS: -1.49 Total: -78.07 kcal Atomic # 8 Polarization: -52.30 SS G_CDS: -0.46 Total: -52.76 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -80.11 5.76 -74.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068230542.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.046 kcal (2) G-P(sol) polarization free energy of solvation -80.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds